Difference between revisions of "NONHSAT071422"

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sequence = <dnaseq>GCCCCGTCAGGGCCCGCCATCTTGGAAGGCCTTTTTTGCCGGTTCTTCCCGCTGAGGAAGTGTCGCTCAAGACGCTGGCCTATGAGTTGTGATTTCTGCCTTTTCCCCTTCCTCCTTGGGCTAAGCCAGACCAGAAAGGGCCCCGTGCGCAACGTGCTTCACAATCTCTCAGGGAAAGCGGCTAACGTGGCGCTACTCCGCCTCCCCTGTTCCTTACCCTTGGGGCGGCCGCCATGTTTCCTGAACACAAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGaggaagacaaacataaagatgaagtgcttaattcaaggtcacacaatgtcggggatggacctccagatttccttactGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCAcccattttatagatgaaaccactgagacatggagcaattgaCTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGgtgagacgtggtCTtgtaacacagtggttaagaatgtgactttggagccagcctgctaggggctgaattctgactcagccatttactaactgtgtgaccttagGGAGGAGGACCTGGTTGATAGAAGAATTTATCTCGTAGTCTTAACATCCACTGTAATTCCAAACTTTGAGGACGAtagagatcagtgg</dnaseq>|
 
sequence = <dnaseq>GCCCCGTCAGGGCCCGCCATCTTGGAAGGCCTTTTTTGCCGGTTCTTCCCGCTGAGGAAGTGTCGCTCAAGACGCTGGCCTATGAGTTGTGATTTCTGCCTTTTCCCCTTCCTCCTTGGGCTAAGCCAGACCAGAAAGGGCCCCGTGCGCAACGTGCTTCACAATCTCTCAGGGAAAGCGGCTAACGTGGCGCTACTCCGCCTCCCCTGTTCCTTACCCTTGGGGCGGCCGCCATGTTTCCTGAACACAAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGaggaagacaaacataaagatgaagtgcttaattcaaggtcacacaatgtcggggatggacctccagatttccttactGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCAcccattttatagatgaaaccactgagacatggagcaattgaCTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGgtgagacgtggtCTtgtaacacagtggttaagaatgtgactttggagccagcctgctaggggctgaattctgactcagccatttactaactgtgtgaccttagGGAGGAGGACCTGGTTGATAGAAGAATTTATCTCGTAGTCTTAACATCCACTGTAATTCCAAACTTTGAGGACGAtagagatcagtgg</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG028093]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG028093]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 23:22, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT071422

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

811 nt

Genomic location

chr2-:70259300..70313647

Exon number

5

Exons

70259300..70259387,70278335..70278437,70310670..70310819,70312679..70312756,70313256..70313647

Genome context

Sequence
000001 GCCCCGTCAG GGCCCGCCAT CTTGGAAGGC CTTTTTTGCC GGTTCTTCCC GCTGAGGAAG TGTCGCTCAA GACGCTGGCC 000080
000081 TATGAGTTGT GATTTCTGCC TTTTCCCCTT CCTCCTTGGG CTAAGCCAGA CCAGAAAGGG CCCCGTGCGC AACGTGCTTC 000160
000161 ACAATCTCTC AGGGAAAGCG GCTAACGTGG CGCTACTCCG CCTCCCCTGT TCCTTACCCT TGGGGCGGCC GCCATGTTTC 000240
000241 CTGAACACAA AATGGCGACA CGTGGTTAGC ATTCGTCGCC AACGAGAAAT TGGGGTCGGC CCGAAAGCTC TAGAATGCAC 000320
000321 CCCTCTTCCT CCCCGGGGCC TTCCACCTCC GCGAGTTTTA TGACTTAAAA AAGCCCACAG GCTGGTCTGA AGaggaagac 000400
000401 aaacataaag atgaagtgct taattcaagg tcacacaatg tcggggatgg acctccagat ttccttactG ACCTGCATTA 000480
000481 TCTTGTGGAT ACCTGAGTGA ATTCCACACC Acccatttta tagatgaaac cactgagaca tggagcaatt gaCTGAGTAG 000560
000561 TCACTGCCCC ACCCCTGCCT GGAGCCTCAC ACATGACTCG CCTCCTCTCA GTGACCACAG gtgagacgtg gtCTtgtaac 000640
000641 acagtggtta agaatgtgac tttggagcca gcctgctagg ggctgaattc tgactcagcc atttactaac tgtgtgacct 000720
000721 tagGGAGGAG GACCTGGTTG ATAGAAGAAT TTATCTCGTA GTCTTAACAT CCACTGTAAT TCCAAACTTT GAGGACGAta 000800
000801 gagatcagtg g
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Predicted Small Protein

Name NONHSAT071422_smProtein_410:499
Length 30
Molecular weight 3289.0266
Aromaticity 0.0344827586207
Instability index 59.8965517241
Isoelectric point 5.48760986328
Runs 5
Runs residual 0.0271551724138
Runs probability 0.0212329977036
Amino acid sequence MKCLIQGHTMSGMDLQISLLTCIILWIPE
Secondary structure LEEEELLLLLLHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -