Difference between revisions of "NONHSAT071422"
Line 42: | Line 42: | ||
sequence = <dnaseq>GCCCCGTCAGGGCCCGCCATCTTGGAAGGCCTTTTTTGCCGGTTCTTCCCGCTGAGGAAGTGTCGCTCAAGACGCTGGCCTATGAGTTGTGATTTCTGCCTTTTCCCCTTCCTCCTTGGGCTAAGCCAGACCAGAAAGGGCCCCGTGCGCAACGTGCTTCACAATCTCTCAGGGAAAGCGGCTAACGTGGCGCTACTCCGCCTCCCCTGTTCCTTACCCTTGGGGCGGCCGCCATGTTTCCTGAACACAAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGaggaagacaaacataaagatgaagtgcttaattcaaggtcacacaatgtcggggatggacctccagatttccttactGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCAcccattttatagatgaaaccactgagacatggagcaattgaCTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGgtgagacgtggtCTtgtaacacagtggttaagaatgtgactttggagccagcctgctaggggctgaattctgactcagccatttactaactgtgtgaccttagGGAGGAGGACCTGGTTGATAGAAGAATTTATCTCGTAGTCTTAACATCCACTGTAATTCCAAACTTTGAGGACGAtagagatcagtgg</dnaseq>| | sequence = <dnaseq>GCCCCGTCAGGGCCCGCCATCTTGGAAGGCCTTTTTTGCCGGTTCTTCCCGCTGAGGAAGTGTCGCTCAAGACGCTGGCCTATGAGTTGTGATTTCTGCCTTTTCCCCTTCCTCCTTGGGCTAAGCCAGACCAGAAAGGGCCCCGTGCGCAACGTGCTTCACAATCTCTCAGGGAAAGCGGCTAACGTGGCGCTACTCCGCCTCCCCTGTTCCTTACCCTTGGGGCGGCCGCCATGTTTCCTGAACACAAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGaggaagacaaacataaagatgaagtgcttaattcaaggtcacacaatgtcggggatggacctccagatttccttactGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCAcccattttatagatgaaaccactgagacatggagcaattgaCTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGgtgagacgtggtCTtgtaacacagtggttaagaatgtgactttggagccagcctgctaggggctgaattctgactcagccatttactaactgtgtgaccttagGGAGGAGGACCTGGTTGATAGAAGAATTTATCTCGTAGTCTTAACATCCACTGTAATTCCAAACTTTGAGGACGAtagagatcagtgg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG028093]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG028093]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:22, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT071422 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
811 nt |
Genomic location |
chr2-:70259300..70313647 |
Exon number |
5 |
Exons |
70259300..70259387,70278335..70278437,70310670..70310819,70312679..70312756,70313256..70313647 |
Genome context |
|
Sequence |
000001 GCCCCGTCAG GGCCCGCCAT CTTGGAAGGC CTTTTTTGCC GGTTCTTCCC GCTGAGGAAG TGTCGCTCAA GACGCTGGCC 000080
000081 TATGAGTTGT GATTTCTGCC TTTTCCCCTT CCTCCTTGGG CTAAGCCAGA CCAGAAAGGG CCCCGTGCGC AACGTGCTTC 000160 000161 ACAATCTCTC AGGGAAAGCG GCTAACGTGG CGCTACTCCG CCTCCCCTGT TCCTTACCCT TGGGGCGGCC GCCATGTTTC 000240 000241 CTGAACACAA AATGGCGACA CGTGGTTAGC ATTCGTCGCC AACGAGAAAT TGGGGTCGGC CCGAAAGCTC TAGAATGCAC 000320 000321 CCCTCTTCCT CCCCGGGGCC TTCCACCTCC GCGAGTTTTA TGACTTAAAA AAGCCCACAG GCTGGTCTGA AGaggaagac 000400 000401 aaacataaag atgaagtgct taattcaagg tcacacaatg tcggggatgg acctccagat ttccttactG ACCTGCATTA 000480 000481 TCTTGTGGAT ACCTGAGTGA ATTCCACACC Acccatttta tagatgaaac cactgagaca tggagcaatt gaCTGAGTAG 000560 000561 TCACTGCCCC ACCCCTGCCT GGAGCCTCAC ACATGACTCG CCTCCTCTCA GTGACCACAG gtgagacgtg gtCTtgtaac 000640 000641 acagtggtta agaatgtgac tttggagcca gcctgctagg ggctgaattc tgactcagcc atttactaac tgtgtgacct 000720 000721 tagGGAGGAG GACCTGGTTG ATAGAAGAAT TTATCTCGTA GTCTTAACAT CCACTGTAAT TCCAAACTTT GAGGACGAta 000800 000801 gagatcagtg g |
Predicted Small Protein
Name | NONHSAT071422_smProtein_410:499 |
Length | 30 |
Molecular weight | 3289.0266 |
Aromaticity | 0.0344827586207 |
Instability index | 59.8965517241 |
Isoelectric point | 5.48760986328 |
Runs | 5 |
Runs residual | 0.0271551724138 |
Runs probability | 0.0212329977036 |
Amino acid sequence | MKCLIQGHTMSGMDLQISLLTCIILWIPE |
Secondary structure | LEEEELLLLLLHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |