Difference between revisions of "NONHSAT071422"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GCCCCGTCAGGGCCCGCCATCTTGGAAGGCCTTTTTTGCCGGTTCTTCCCGCTGAGGAAGTGTCGCTCAAGACGCTGGCCTATGAGTTGTGATTTCTGCCTTTTCCCCTTCCTCCTTGGGCTAAGCCAGACCAGAAAGGGCCCCGTGCGCAACGTGCTTCACAATCTCTCAGGGAAAGCGGCTAACGTGGCGCTACTCCGCCTCCCCTGTTCCTTACCCTTGGGGCGGCCGCCATGTTTCCTGAACACAAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGaggaagacaaacataaagatgaagtgcttaattcaaggtcacacaatgtcggggatggacctccagatttccttactGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCAcccattttatagatgaaaccactgagacatggagcaattgaCTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGgtgagacgtggtCTtgtaacacagtggttaagaatgtgactttggagccagcctgctaggggctgaattctgactcagccatttactaactgtgtgaccttagGGAGGAGGACCTGGTTGATAGAAGAATTTATCTCGTAGTCTTAACATCCACTGTAATTCCAAACTTTGAGGACGAtagagatcagtgg</dnaseq>| | sequence = <dnaseq>GCCCCGTCAGGGCCCGCCATCTTGGAAGGCCTTTTTTGCCGGTTCTTCCCGCTGAGGAAGTGTCGCTCAAGACGCTGGCCTATGAGTTGTGATTTCTGCCTTTTCCCCTTCCTCCTTGGGCTAAGCCAGACCAGAAAGGGCCCCGTGCGCAACGTGCTTCACAATCTCTCAGGGAAAGCGGCTAACGTGGCGCTACTCCGCCTCCCCTGTTCCTTACCCTTGGGGCGGCCGCCATGTTTCCTGAACACAAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGaggaagacaaacataaagatgaagtgcttaattcaaggtcacacaatgtcggggatggacctccagatttccttactGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCAcccattttatagatgaaaccactgagacatggagcaattgaCTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGgtgagacgtggtCTtgtaacacagtggttaagaatgtgactttggagccagcctgctaggggctgaattctgactcagccatttactaactgtgtgaccttagGGAGGAGGACCTGGTTGATAGAAGAATTTATCTCGTAGTCTTAACATCCACTGTAATTCCAAACTTTGAGGACGAtagagatcagtgg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG028093]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:22, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT071422 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
811 nt |
| Genomic location |
chr2-:70259300..70313647 |
| Exon number |
5 |
| Exons |
70259300..70259387,70278335..70278437,70310670..70310819,70312679..70312756,70313256..70313647 |
| Genome context |
|
| Sequence |
000001 GCCCCGTCAG GGCCCGCCAT CTTGGAAGGC CTTTTTTGCC GGTTCTTCCC GCTGAGGAAG TGTCGCTCAA GACGCTGGCC 000080
000081 TATGAGTTGT GATTTCTGCC TTTTCCCCTT CCTCCTTGGG CTAAGCCAGA CCAGAAAGGG CCCCGTGCGC AACGTGCTTC 000160 000161 ACAATCTCTC AGGGAAAGCG GCTAACGTGG CGCTACTCCG CCTCCCCTGT TCCTTACCCT TGGGGCGGCC GCCATGTTTC 000240 000241 CTGAACACAA AATGGCGACA CGTGGTTAGC ATTCGTCGCC AACGAGAAAT TGGGGTCGGC CCGAAAGCTC TAGAATGCAC 000320 000321 CCCTCTTCCT CCCCGGGGCC TTCCACCTCC GCGAGTTTTA TGACTTAAAA AAGCCCACAG GCTGGTCTGA AGaggaagac 000400 000401 aaacataaag atgaagtgct taattcaagg tcacacaatg tcggggatgg acctccagat ttccttactG ACCTGCATTA 000480 000481 TCTTGTGGAT ACCTGAGTGA ATTCCACACC Acccatttta tagatgaaac cactgagaca tggagcaatt gaCTGAGTAG 000560 000561 TCACTGCCCC ACCCCTGCCT GGAGCCTCAC ACATGACTCG CCTCCTCTCA GTGACCACAG gtgagacgtg gtCTtgtaac 000640 000641 acagtggtta agaatgtgac tttggagcca gcctgctagg ggctgaattc tgactcagcc atttactaac tgtgtgacct 000720 000721 tagGGAGGAG GACCTGGTTG ATAGAAGAAT TTATCTCGTA GTCTTAACAT CCACTGTAAT TCCAAACTTT GAGGACGAta 000800 000801 gagatcagtg g |
Predicted Small Protein
| Name | NONHSAT071422_smProtein_410:499 |
| Length | 30 |
| Molecular weight | 3289.0266 |
| Aromaticity | 0.0344827586207 |
| Instability index | 59.8965517241 |
| Isoelectric point | 5.48760986328 |
| Runs | 5 |
| Runs residual | 0.0271551724138 |
| Runs probability | 0.0212329977036 |
| Amino acid sequence | MKCLIQGHTMSGMDLQISLLTCIILWIPE |
| Secondary structure | LEEEELLLLLLHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
