Difference between revisions of "NONHSAT076703"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>tgaagtgctgggattacaggcatgagccaccacagccagcTGGATTATGAGTTTTTTTTAAATTTTACTTTAAAACTTTCACACatttaaaaaatatatatatatacacatacacacacacacacacacacacacacacacacacacacatatatatagaaaagattgtttttatgataattttttttaaCATCCTAAAGGTGAGGATATAGAAATAGCAAGTGATAATTATTCTTTGGTAAAACTTGTCTGTGAAAGGAAATGGACTGAAAGCATAGAAGCTACAGCTCATTTATAACCAATCGAGAAGCAGGACATGTCAAATGCTGTACAGAGTCCTGCTACCTGGGAAGCTTCTGATAAACGAGGGTTGCTATTATTATTATTGTCATTAAAATGTCTTCAGTTCTCATAGACTTTCAGCACCAGCACACTGTCCAGGAGCACTGTCCAGAATGTTCTCAAGAAGAATTCTCTTTCTAGAACGCTCTCCTTTTTTAAAGTTTCTTCTCTTATTTCCCGCTCCTTGGCTACTCAGTAGAGTTGTGCTGGTGCTGAAAGTCTACGAGACCTGAAGGCATTTTAGTGGTAATAATAATAATAATAGCAACCCCCGTTTATTAGAAGCCTCCCAGGTAGCAGGACTCTGCACAGCATTTTACACAGTGTGCTACTCCATTGGTTATAAATATGCTGTAGCTCCTATGCTTTCAGTCCACTTTCTTCCACAGAAAAGTTTTGCCAAAGAATAATTATCACTTGCTATTCAATATCCTGACCTCCAGGATGttaaaaaatgtttatcataaaaataatcttttctatgtaatttttaaatgtgtaaaaatttaaaattaaaaaaCTCATAATCCAACCGTCTATACATATAAGCATCTTGGTACAACTCTTTCTAAAAATCATCATACATATCTAACACATAGGTACATATTGT</dnaseq>| | sequence = <dnaseq>tgaagtgctgggattacaggcatgagccaccacagccagcTGGATTATGAGTTTTTTTTAAATTTTACTTTAAAACTTTCACACatttaaaaaatatatatatatacacatacacacacacacacacacacacacacacacacacacacatatatatagaaaagattgtttttatgataattttttttaaCATCCTAAAGGTGAGGATATAGAAATAGCAAGTGATAATTATTCTTTGGTAAAACTTGTCTGTGAAAGGAAATGGACTGAAAGCATAGAAGCTACAGCTCATTTATAACCAATCGAGAAGCAGGACATGTCAAATGCTGTACAGAGTCCTGCTACCTGGGAAGCTTCTGATAAACGAGGGTTGCTATTATTATTATTGTCATTAAAATGTCTTCAGTTCTCATAGACTTTCAGCACCAGCACACTGTCCAGGAGCACTGTCCAGAATGTTCTCAAGAAGAATTCTCTTTCTAGAACGCTCTCCTTTTTTAAAGTTTCTTCTCTTATTTCCCGCTCCTTGGCTACTCAGTAGAGTTGTGCTGGTGCTGAAAGTCTACGAGACCTGAAGGCATTTTAGTGGTAATAATAATAATAATAGCAACCCCCGTTTATTAGAAGCCTCCCAGGTAGCAGGACTCTGCACAGCATTTTACACAGTGTGCTACTCCATTGGTTATAAATATGCTGTAGCTCCTATGCTTTCAGTCCACTTTCTTCCACAGAAAAGTTTTGCCAAAGAATAATTATCACTTGCTATTCAATATCCTGACCTCCAGGATGttaaaaaatgtttatcataaaaataatcttttctatgtaatttttaaatgtgtaaaaatttaaaattaaaaaaCTCATAATCCAACCGTCTATACATATAAGCATCTTGGTACAACTCTTTCTAAAAATCATCATACATATCTAACACATAGGTACATATTGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG030422]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:45, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT076703 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
952 nt |
| Genomic location |
chr2+:213846495..213847446 |
| Exon number |
1 |
| Exons |
213846495..213847446 |
| Genome context |
|
| Sequence |
000001 tgaagtgctg ggattacagg catgagccac cacagccagc TGGATTATGA GTTTTTTTTA AATTTTACTT TAAAACTTTC 000080
000081 ACACatttaa aaaatatata tatatacaca tacacacaca cacacacaca cacacacaca cacacacaca tatatataga 000160 000161 aaagattgtt tttatgataa ttttttttaa CATCCTAAAG GTGAGGATAT AGAAATAGCA AGTGATAATT ATTCTTTGGT 000240 000241 AAAACTTGTC TGTGAAAGGA AATGGACTGA AAGCATAGAA GCTACAGCTC ATTTATAACC AATCGAGAAG CAGGACATGT 000320 000321 CAAATGCTGT ACAGAGTCCT GCTACCTGGG AAGCTTCTGA TAAACGAGGG TTGCTATTAT TATTATTGTC ATTAAAATGT 000400 000401 CTTCAGTTCT CATAGACTTT CAGCACCAGC ACACTGTCCA GGAGCACTGT CCAGAATGTT CTCAAGAAGA ATTCTCTTTC 000480 000481 TAGAACGCTC TCCTTTTTTA AAGTTTCTTC TCTTATTTCC CGCTCCTTGG CTACTCAGTA GAGTTGTGCT GGTGCTGAAA 000560 000561 GTCTACGAGA CCTGAAGGCA TTTTAGTGGT AATAATAATA ATAATAGCAA CCCCCGTTTA TTAGAAGCCT CCCAGGTAGC 000640 000641 AGGACTCTGC ACAGCATTTT ACACAGTGTG CTACTCCATT GGTTATAAAT ATGCTGTAGC TCCTATGCTT TCAGTCCACT 000720 000721 TTCTTCCACA GAAAAGTTTT GCCAAAGAAT AATTATCACT TGCTATTCAA TATCCTGACC TCCAGGATGt taaaaaatgt 000800 000801 ttatcataaa aataatcttt tctatgtaat ttttaaatgt gtaaaaattt aaaattaaaa aaCTCATAAT CCAACCGTCT 000880 000881 ATACATATAA GCATCTTGGT ACAACTCTTT CTAAAAATCA TCATACATAT CTAACACATA GGTACATATT GT |
Predicted Small Protein
| Name | NONHSAT076703_smProtein_455:574 |
| Length | 40 |
| Molecular weight | 4739.7957 |
| Aromaticity | 0.179487179487 |
| Instability index | 73.5615384615 |
| Isoelectric point | 10.9313354492 |
| Runs | 9 |
| Runs residual | 0.0620286576169 |
| Runs probability | 0.0645645645647 |
| Amino acid sequence | MFSRRILFLERSPFLKFLLLFPAPWLLSRVVLVLKVYET |
| Secondary structure | LLEEEEELLLLLHHHHHHHHLLLHHHHHLEEEEEEEEEL |
| PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
| PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |
