Difference between revisions of "NONHSAT077885"
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sequence = <dnaseq>CAGCCTCGTCTTACAGCGTGACTGCAAAGAAAAAGACTTTTGTTTTGCAAAAGAAAAGCAGCTCGGTGACTCCGTCCACATCGCCACAGTTGAGTCAGATGGCAGTGGCAGTCCTTTGCCAGTGGAAGGAGTTCCTGCTAAGGGGAGGTGCAGGAGCCCCTGCCCCCGTCTCTGTTTTGGAAGTGGTCCATCACAGTTCCTTCTCAATTTGTTGGGCCTCGAAGGGAGAATTCTTTCTCTGGCTTTGGAGTCTAAGAACAGGTTTCTGCATACTGCAGAAGCGTGGCTGACTGACAGCCTCACTGATTCCGGGGAATGGCGAGCTGTCATCTCATCCGCAGAGACACAGACTACACCTTCAGGAACTGCAGCTTGGagtgtactccttctacttatgaaaaaaagttaactataaaatggcctcaggcaggtccttcaggaggtttccagaagaaggcatcattgtcacaggaggtggcagctccatgtgtgttactgggacacgatgtggaagtggaagaaggtgacatggatgatcctgcccctgtgaCTAATTTATTATTGTgcaactgccagtcctgcgcattccagctacgctaagcgccctgcccagGCACGTAACAAAACATAGACCTGTTTTGAAGTGGCTTGTTACCCAAGGGTGCCTCACTCATCTGCGCCACCAGGAAGATGAACTGTGAGGGCTCCTATA</dnaseq>| | sequence = <dnaseq>CAGCCTCGTCTTACAGCGTGACTGCAAAGAAAAAGACTTTTGTTTTGCAAAAGAAAAGCAGCTCGGTGACTCCGTCCACATCGCCACAGTTGAGTCAGATGGCAGTGGCAGTCCTTTGCCAGTGGAAGGAGTTCCTGCTAAGGGGAGGTGCAGGAGCCCCTGCCCCCGTCTCTGTTTTGGAAGTGGTCCATCACAGTTCCTTCTCAATTTGTTGGGCCTCGAAGGGAGAATTCTTTCTCTGGCTTTGGAGTCTAAGAACAGGTTTCTGCATACTGCAGAAGCGTGGCTGACTGACAGCCTCACTGATTCCGGGGAATGGCGAGCTGTCATCTCATCCGCAGAGACACAGACTACACCTTCAGGAACTGCAGCTTGGagtgtactccttctacttatgaaaaaaagttaactataaaatggcctcaggcaggtccttcaggaggtttccagaagaaggcatcattgtcacaggaggtggcagctccatgtgtgttactgggacacgatgtggaagtggaagaaggtgacatggatgatcctgcccctgtgaCTAATTTATTATTGTgcaactgccagtcctgcgcattccagctacgctaagcgccctgcccagGCACGTAACAAAACATAGACCTGTTTTGAAGTGGCTTGTTACCCAAGGGTGCCTCACTCATCTGCGCCACCAGGAAGATGAACTGTGAGGGCTCCTATA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG031009]] | + | [[Category:Intergenic]][[Category:NONHSAG031009]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:50, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077885 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
712 nt |
Genomic location |
chr2-:242028682..242033847 |
Exon number |
5 |
Exons |
242028682..242028780,242029395..242029459,242029693..242029864,242031310..242031529,242033692..242033847 |
Genome context |
|
Sequence |
000001 CAGCCTCGTC TTACAGCGTG ACTGCAAAGA AAAAGACTTT TGTTTTGCAA AAGAAAAGCA GCTCGGTGAC TCCGTCCACA 000080
000081 TCGCCACAGT TGAGTCAGAT GGCAGTGGCA GTCCTTTGCC AGTGGAAGGA GTTCCTGCTA AGGGGAGGTG CAGGAGCCCC 000160 000161 TGCCCCCGTC TCTGTTTTGG AAGTGGTCCA TCACAGTTCC TTCTCAATTT GTTGGGCCTC GAAGGGAGAA TTCTTTCTCT 000240 000241 GGCTTTGGAG TCTAAGAACA GGTTTCTGCA TACTGCAGAA GCGTGGCTGA CTGACAGCCT CACTGATTCC GGGGAATGGC 000320 000321 GAGCTGTCAT CTCATCCGCA GAGACACAGA CTACACCTTC AGGAACTGCA GCTTGGagtg tactccttct acttatgaaa 000400 000401 aaaagttaac tataaaatgg cctcaggcag gtccttcagg aggtttccag aagaaggcat cattgtcaca ggaggtggca 000480 000481 gctccatgtg tgttactggg acacgatgtg gaagtggaag aaggtgacat ggatgatcct gcccctgtga CTAATTTATT 000560 000561 ATTGTgcaac tgccagtcct gcgcattcca gctacgctaa gcgccctgcc cagGCACGTA ACAAAACATA GACCTGTTTT 000640 000641 GAAGTGGCTT GTTACCCAAG GGTGCCTCAC TCATCTGCGC CACCAGGAAG ATGAACTGTG AGGGCTCCTA TA |
Predicted Small Protein
Name | NONHSAT077885_smProtein_98:289 |
Length | 64 |
Molecular weight | 7023.2369 |
Aromaticity | 0.142857142857 |
Instability index | 48.9349206349 |
Isoelectric point | 9.09930419922 |
Runs | 12 |
Runs residual | 0.0455134434726 |
Runs probability | 0.0430577636461 |
Amino acid sequence | MAVAVLCQWKEFLLRGGAGAPAPVSVLEVVHHSSFSICWASKGEFFLWLWSLRTGFCILQ KRG |
Secondary structure | LEEEEHHHHHHHHHHLLLLLLLLEEEEEEEELLLEEEEELLLLHHHHHHHHHHLLLEEEE ELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLL |
PiMo | oooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii iii |