Difference between revisions of "NONHSAT087920"

From LncRNAWiki
Jump to: navigation, search
Line 42: Line 42:
 
sequence = <dnaseq>ACATGGAAGTCTCCAAGCCTGTGCCATCCACCTGCCAAGGAAAAGCACAAGCATACAGTTTGAACATTTATTCGCCTCCTGAGCTTGTACAACAGTCGTGGGAGTTGCTGCAGAAGCAAGCGAAAAGCCAGATGAGCGCTTCTAAACTTAGAGAGAGGGAGAGCGCCTCATCTCTTCCATTTTCCAGGTATTCCTGAGATGATTTATTGGAGCTCAAAGCTTTGGGAGAGTTGGGGCCTTCCATTCCCTCCAGTAAATACTTGTTTTTCTTCCACCGCTGAGGCAAATGCGGGGTGGCTGATCACCTGGCAGACATCTTAGGAAACAGGAGCACCGGTCTGGGAAACTGCTGGCCTGGCCTAACACCTGGCGCTGTGGTGCAGGAGGGCAGCCACTGAGGATTCTTGAGGAGAGAGAGaccatagaatgaatgaaagagttggaaagactttaaagctctgggaggctgaatcctttatttcgctggaagaaaaactgaatgccaagagggcctcactttccccaaagctatacagccatcaggggcaatgctgggattcccccatggatctcttgactcctaatacagtgctctttctgatatgccatctgGCTCCATAATGAACATTGTGTTCCAGGAAAATCAGTCTGCGCTGAACAGGATGGAATTGGGGCAGGACGTCCAGTGAGGAGGACATTGAGGCAGTAGAGCAGTTGATTGCCGAATGACCACCTACCCTGACTTAAAAGATCAACCTCAGGGAGGATTGGAGCTTTCTAGAGTCTCTTGGGACAGCAGAAGCACAGGCCGGGTTGGACTGAATCTTTAAGTGGACATGAGGGACAAAGTACCTCCTGTTGGTAAACATCTCACCACCAACCCACTGTGGTGGCTAAAATCCCACCTTTAGTCCCAGCAACATATGAGCATGTCACCAGGAGGTCTTCACAGGCCTGTCTGCCACCTGAGTGTAGACATCTTTTGGCCCTGGAGCCCAGAGAGGCTGAATGTGGAGAGGGTGGAGAGAGGTCTGTAGTCCTCAGAGAAGACTTGCAGCTTTTTCAGAGCCACCAACCCATAAAAAAAAAAATCCCCAAACAGAAAAATCCTAACTGTGGTGACCAGGTACCTCCTGAGACATGAAGCCTCCACTTACCTGGACCCTGGAGGCCTCTCCGGGCACAGCTGCCAATGTTGATCTTAGATAAGACCACCAGCAAGTAAACATCCACTGTGCAAAGCTGTGTTATCTTTGGGGAACTGAAATGTCCCCTGGGAGTTGGAAACTCCCCTAGCCACATACCACAGAGTTGAGGAAGGAAGAGCTGATGGACGGAAGAACCATGGCGGGAGGAGTCATCCGGAAGCTACCTCGCTGCCCTGTCAGTTACGGAACAGAGGAGAGATGCCGGCTGGAGGACACAGCAAATTTGAACCAAGAGGAGCTTGGAGGAAGCCCGAGCGACCTGGAGGGGACTGGCTGACCTTCCTCATTCTTTTCAAGTGTGAATAATAACCAAGCCCAGTTTGGCAACTCCTTGAGGGTGAGGACGAAGCCCCATTCTCCTTTTTGGAACTTGGTGGGGCTCAGGAAGCAGGTTCTCTCCAGTCGGTGGCTTTCCTTTCTGTTGCGGGTCTCTTGAGGGCCTGCCTTCATGAAGGCACATGAGTGACTCATCATTTGTGAATTAATTGCTATATGTGAAGGGCATCTGAGAACAAATTATCTTCATAGACTTTTCATTATAATTTTATTTGTACTGA</dnaseq>|
 
sequence = <dnaseq>ACATGGAAGTCTCCAAGCCTGTGCCATCCACCTGCCAAGGAAAAGCACAAGCATACAGTTTGAACATTTATTCGCCTCCTGAGCTTGTACAACAGTCGTGGGAGTTGCTGCAGAAGCAAGCGAAAAGCCAGATGAGCGCTTCTAAACTTAGAGAGAGGGAGAGCGCCTCATCTCTTCCATTTTCCAGGTATTCCTGAGATGATTTATTGGAGCTCAAAGCTTTGGGAGAGTTGGGGCCTTCCATTCCCTCCAGTAAATACTTGTTTTTCTTCCACCGCTGAGGCAAATGCGGGGTGGCTGATCACCTGGCAGACATCTTAGGAAACAGGAGCACCGGTCTGGGAAACTGCTGGCCTGGCCTAACACCTGGCGCTGTGGTGCAGGAGGGCAGCCACTGAGGATTCTTGAGGAGAGAGAGaccatagaatgaatgaaagagttggaaagactttaaagctctgggaggctgaatcctttatttcgctggaagaaaaactgaatgccaagagggcctcactttccccaaagctatacagccatcaggggcaatgctgggattcccccatggatctcttgactcctaatacagtgctctttctgatatgccatctgGCTCCATAATGAACATTGTGTTCCAGGAAAATCAGTCTGCGCTGAACAGGATGGAATTGGGGCAGGACGTCCAGTGAGGAGGACATTGAGGCAGTAGAGCAGTTGATTGCCGAATGACCACCTACCCTGACTTAAAAGATCAACCTCAGGGAGGATTGGAGCTTTCTAGAGTCTCTTGGGACAGCAGAAGCACAGGCCGGGTTGGACTGAATCTTTAAGTGGACATGAGGGACAAAGTACCTCCTGTTGGTAAACATCTCACCACCAACCCACTGTGGTGGCTAAAATCCCACCTTTAGTCCCAGCAACATATGAGCATGTCACCAGGAGGTCTTCACAGGCCTGTCTGCCACCTGAGTGTAGACATCTTTTGGCCCTGGAGCCCAGAGAGGCTGAATGTGGAGAGGGTGGAGAGAGGTCTGTAGTCCTCAGAGAAGACTTGCAGCTTTTTCAGAGCCACCAACCCATAAAAAAAAAAATCCCCAAACAGAAAAATCCTAACTGTGGTGACCAGGTACCTCCTGAGACATGAAGCCTCCACTTACCTGGACCCTGGAGGCCTCTCCGGGCACAGCTGCCAATGTTGATCTTAGATAAGACCACCAGCAAGTAAACATCCACTGTGCAAAGCTGTGTTATCTTTGGGGAACTGAAATGTCCCCTGGGAGTTGGAAACTCCCCTAGCCACATACCACAGAGTTGAGGAAGGAAGAGCTGATGGACGGAAGAACCATGGCGGGAGGAGTCATCCGGAAGCTACCTCGCTGCCCTGTCAGTTACGGAACAGAGGAGAGATGCCGGCTGGAGGACACAGCAAATTTGAACCAAGAGGAGCTTGGAGGAAGCCCGAGCGACCTGGAGGGGACTGGCTGACCTTCCTCATTCTTTTCAAGTGTGAATAATAACCAAGCCCAGTTTGGCAACTCCTTGAGGGTGAGGACGAAGCCCCATTCTCCTTTTTGGAACTTGGTGGGGCTCAGGAAGCAGGTTCTCTCCAGTCGGTGGCTTTCCTTTCTGTTGCGGGTCTCTTGAGGGCCTGCCTTCATGAAGGCACATGAGTGACTCATCATTTGTGAATTAATTGCTATATGTGAAGGGCATCTGAGAACAAATTATCTTCATAGACTTTTCATTATAATTTTATTTGTACTGA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG034421]]
+
[[Category:Intergenic]][[Category:NONHSAG034421]][[Category:Transcripts]]

Revision as of 00:25, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT087920

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1765 nt

Genomic location

chr3+:10322636..10335133

Exon number

5

Exons

10322636..10322686,10327432..10327537,10329098..10329165,10329629..10329786,10333752..10335133

Genome context

Sequence
000001 ACATGGAAGT CTCCAAGCCT GTGCCATCCA CCTGCCAAGG AAAAGCACAA GCATACAGTT TGAACATTTA TTCGCCTCCT 000080
000081 GAGCTTGTAC AACAGTCGTG GGAGTTGCTG CAGAAGCAAG CGAAAAGCCA GATGAGCGCT TCTAAACTTA GAGAGAGGGA 000160
000161 GAGCGCCTCA TCTCTTCCAT TTTCCAGGTA TTCCTGAGAT GATTTATTGG AGCTCAAAGC TTTGGGAGAG TTGGGGCCTT 000240
000241 CCATTCCCTC CAGTAAATAC TTGTTTTTCT TCCACCGCTG AGGCAAATGC GGGGTGGCTG ATCACCTGGC AGACATCTTA 000320
000321 GGAAACAGGA GCACCGGTCT GGGAAACTGC TGGCCTGGCC TAACACCTGG CGCTGTGGTG CAGGAGGGCA GCCACTGAGG 000400
000401 ATTCTTGAGG AGAGAGAGac catagaatga atgaaagagt tggaaagact ttaaagctct gggaggctga atcctttatt 000480
000481 tcgctggaag aaaaactgaa tgccaagagg gcctcacttt ccccaaagct atacagccat caggggcaat gctgggattc 000560
000561 ccccatggat ctcttgactc ctaatacagt gctctttctg atatgccatc tgGCTCCATA ATGAACATTG TGTTCCAGGA 000640
000641 AAATCAGTCT GCGCTGAACA GGATGGAATT GGGGCAGGAC GTCCAGTGAG GAGGACATTG AGGCAGTAGA GCAGTTGATT 000720
000721 GCCGAATGAC CACCTACCCT GACTTAAAAG ATCAACCTCA GGGAGGATTG GAGCTTTCTA GAGTCTCTTG GGACAGCAGA 000800
000801 AGCACAGGCC GGGTTGGACT GAATCTTTAA GTGGACATGA GGGACAAAGT ACCTCCTGTT GGTAAACATC TCACCACCAA 000880
000881 CCCACTGTGG TGGCTAAAAT CCCACCTTTA GTCCCAGCAA CATATGAGCA TGTCACCAGG AGGTCTTCAC AGGCCTGTCT 000960
000961 GCCACCTGAG TGTAGACATC TTTTGGCCCT GGAGCCCAGA GAGGCTGAAT GTGGAGAGGG TGGAGAGAGG TCTGTAGTCC 001040
001041 TCAGAGAAGA CTTGCAGCTT TTTCAGAGCC ACCAACCCAT AAAAAAAAAA ATCCCCAAAC AGAAAAATCC TAACTGTGGT 001120
001121 GACCAGGTAC CTCCTGAGAC ATGAAGCCTC CACTTACCTG GACCCTGGAG GCCTCTCCGG GCACAGCTGC CAATGTTGAT 001200
001201 CTTAGATAAG ACCACCAGCA AGTAAACATC CACTGTGCAA AGCTGTGTTA TCTTTGGGGA ACTGAAATGT CCCCTGGGAG 001280
001281 TTGGAAACTC CCCTAGCCAC ATACCACAGA GTTGAGGAAG GAAGAGCTGA TGGACGGAAG AACCATGGCG GGAGGAGTCA 001360
001361 TCCGGAAGCT ACCTCGCTGC CCTGTCAGTT ACGGAACAGA GGAGAGATGC CGGCTGGAGG ACACAGCAAA TTTGAACCAA 001440
001441 GAGGAGCTTG GAGGAAGCCC GAGCGACCTG GAGGGGACTG GCTGACCTTC CTCATTCTTT TCAAGTGTGA ATAATAACCA 001520
001521 AGCCCAGTTT GGCAACTCCT TGAGGGTGAG GACGAAGCCC CATTCTCCTT TTTGGAACTT GGTGGGGCTC AGGAAGCAGG 001600
001601 TTCTCTCCAG TCGGTGGCTT TCCTTTCTGT TGCGGGTCTC TTGAGGGCCT GCCTTCATGA AGGCACATGA GTGACTCATC 001680
001681 ATTTGTGAAT TAATTGCTAT ATGTGAAGGG CATCTGAGAA CAAATTATCT TCATAGACTT TTCATTATAA TTTTATTTGT 001760
001761 ACTGA
[back to top]

Predicted Small Protein

Name NONHSAT087920_smProtein_2:196
Length 65
Molecular weight 7193.0709
Aromaticity 0.078125
Instability index 78.734375
Isoelectric point 9.30072021484
Runs 7
Runs residual 0.03921875
Runs probability 0.0353042117748
Amino acid sequence MEVSKPVPSTCQGKAQAYSLNIYSPPELVQQSWELLQKQAKSQMSASKLRERESASSLPF
SRYS
Secondary structure LLLLLLLLLLLLLLLEEEELLLLLLHHHHHHHHHHHHHHHHHLLLHHHHHHLLLLLLLLL
LLLL
PRMN -
PiMo -