Difference between revisions of "NONHSAT089856"
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sequence = <dnaseq>ATGAGGCACACAGCCACTTCTCGTCAGGAGCTGGTTGAAAACTGTGCTGTGCCTGTAGCAGGAATGGCACAAGATGATAGCCGTCATGGGCAAGTGCCATCCAGCTTTCATCATGGTGCCACAAGGAACTTGACCTGTCCACCAAAGTGTAACAAAGGGAACCAGGAAGTCCTTATTCTGTGTTTGTGGACACCAAGATGAGCAAACTACATCTCCATGAAACAGAAGAACAGCCACATTTCAGGGAGACAGGAGCAGAGTCTGATGTGCATGCTATTAAGGAAGACCAGGAGAATTCTGATGACACAGAAGAGGAGGAGGAAGAAGAGGAAGAAGTCTTTTACAAAAGGGAGCAGATCATAGTGGAGGTAAACCTTAATAATCAAACATTAAATGTACCTAAAGGGGAAAAGGGTACCTCTTCTCAATCCAAAGAGACTCCTGTTCTTAAACAATGAGGAGGAAGAGAGAGAGGAAGGGGCCACAGATAACAGCAATGACTATGGAGAGAATGATAAGCAGAAGAAAAAGGAGAAGATAACAGAGAAAGTCAGCGTTACAGAAAGAAGAATGAGGAGAGCTGCCTCTGTTGCTGCAGCTACCACTTCCCCTACTCCCAGAACTACAAGAGGTTGCAGGAAGAGTGCAGAGCCACCTAAGCGTAAGAAGCGGGAAACAAAGGAGCCTGAAGCACCAGTGCAGAAAGCTAAGTtgccCCAGGGTATTTAATGCTCACTGGTGTCTGGAGAAGCAAATGAATATTACTCATAGGCACATGCAGATTTGTGATAAATGTGGCAATAAGTTTGTCCTGGAAAGTGAGCTATATCTTCACCGGCAAACAGACTGTGAAAAAAACATTTAGTTTGTTGCCTGTAATAAATCGTTCAAGAAACTGGATCCTTCATGAACATATCAAGATCGTCCATGGATATGAAGAAAAGAAATTTTCCTGTGAAATTTGTGAGAAAAAATTCTATGCCATGGCTCATGTGCGAAAACACATGGTTGCACACATGAAAGACATGCCATTTACATGTGAAACCTGTGGAAAATCATTCAAATGCAGTATGTCACTCATGGGGCACTCCCTGCAGCATTCTGGAGAGAAGTCCTTCAGATGCGAGAACTGTGACGAAAGGTTTCAGTACAATTACCAGCTACACACCCACATGAGCATCCACGTTGGGCACAAACAGTTCATGTGCCAGTGGTGTGGCAAGGATTTCAACACGAAGCAGTATTTTCATGAACACATGAAAACAAACACTGGAGAGAAACCCTTTATCTGTGAAATCTGTGGCAAAAG</dnaseq>| | sequence = <dnaseq>ATGAGGCACACAGCCACTTCTCGTCAGGAGCTGGTTGAAAACTGTGCTGTGCCTGTAGCAGGAATGGCACAAGATGATAGCCGTCATGGGCAAGTGCCATCCAGCTTTCATCATGGTGCCACAAGGAACTTGACCTGTCCACCAAAGTGTAACAAAGGGAACCAGGAAGTCCTTATTCTGTGTTTGTGGACACCAAGATGAGCAAACTACATCTCCATGAAACAGAAGAACAGCCACATTTCAGGGAGACAGGAGCAGAGTCTGATGTGCATGCTATTAAGGAAGACCAGGAGAATTCTGATGACACAGAAGAGGAGGAGGAAGAAGAGGAAGAAGTCTTTTACAAAAGGGAGCAGATCATAGTGGAGGTAAACCTTAATAATCAAACATTAAATGTACCTAAAGGGGAAAAGGGTACCTCTTCTCAATCCAAAGAGACTCCTGTTCTTAAACAATGAGGAGGAAGAGAGAGAGGAAGGGGCCACAGATAACAGCAATGACTATGGAGAGAATGATAAGCAGAAGAAAAAGGAGAAGATAACAGAGAAAGTCAGCGTTACAGAAAGAAGAATGAGGAGAGCTGCCTCTGTTGCTGCAGCTACCACTTCCCCTACTCCCAGAACTACAAGAGGTTGCAGGAAGAGTGCAGAGCCACCTAAGCGTAAGAAGCGGGAAACAAAGGAGCCTGAAGCACCAGTGCAGAAAGCTAAGTtgccCCAGGGTATTTAATGCTCACTGGTGTCTGGAGAAGCAAATGAATATTACTCATAGGCACATGCAGATTTGTGATAAATGTGGCAATAAGTTTGTCCTGGAAAGTGAGCTATATCTTCACCGGCAAACAGACTGTGAAAAAAACATTTAGTTTGTTGCCTGTAATAAATCGTTCAAGAAACTGGATCCTTCATGAACATATCAAGATCGTCCATGGATATGAAGAAAAGAAATTTTCCTGTGAAATTTGTGAGAAAAAATTCTATGCCATGGCTCATGTGCGAAAACACATGGTTGCACACATGAAAGACATGCCATTTACATGTGAAACCTGTGGAAAATCATTCAAATGCAGTATGTCACTCATGGGGCACTCCCTGCAGCATTCTGGAGAGAAGTCCTTCAGATGCGAGAACTGTGACGAAAGGTTTCAGTACAATTACCAGCTACACACCCACATGAGCATCCACGTTGGGCACAAACAGTTCATGTGCCAGTGGTGTGGCAAGGATTTCAACACGAAGCAGTATTTTCATGAACACATGAAAACAAACACTGGAGAGAAACCCTTTATCTGTGAAATCTGTGGCAAAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:NONHSAG035137]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG035137]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:32, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT089856 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
1309 nt |
| Genomic location |
chr3-:50824105..50825716 |
| Exon number |
2 |
| Exons |
50824105..50824701,50825005..50825716 |
| Genome context |
|
| Sequence |
000001 ATGAGGCACA CAGCCACTTC TCGTCAGGAG CTGGTTGAAA ACTGTGCTGT GCCTGTAGCA GGAATGGCAC AAGATGATAG 000080
000081 CCGTCATGGG CAAGTGCCAT CCAGCTTTCA TCATGGTGCC ACAAGGAACT TGACCTGTCC ACCAAAGTGT AACAAAGGGA 000160 000161 ACCAGGAAGT CCTTATTCTG TGTTTGTGGA CACCAAGATG AGCAAACTAC ATCTCCATGA AACAGAAGAA CAGCCACATT 000240 000241 TCAGGGAGAC AGGAGCAGAG TCTGATGTGC ATGCTATTAA GGAAGACCAG GAGAATTCTG ATGACACAGA AGAGGAGGAG 000320 000321 GAAGAAGAGG AAGAAGTCTT TTACAAAAGG GAGCAGATCA TAGTGGAGGT AAACCTTAAT AATCAAACAT TAAATGTACC 000400 000401 TAAAGGGGAA AAGGGTACCT CTTCTCAATC CAAAGAGACT CCTGTTCTTA AACAATGAGG AGGAAGAGAG AGAGGAAGGG 000480 000481 GCCACAGATA ACAGCAATGA CTATGGAGAG AATGATAAGC AGAAGAAAAA GGAGAAGATA ACAGAGAAAG TCAGCGTTAC 000560 000561 AGAAAGAAGA ATGAGGAGAG CTGCCTCTGT TGCTGCAGCT ACCACTTCCC CTACTCCCAG AACTACAAGA GGTTGCAGGA 000640 000641 AGAGTGCAGA GCCACCTAAG CGTAAGAAGC GGGAAACAAA GGAGCCTGAA GCACCAGTGC AGAAAGCTAA GTtgccCCAG 000720 000721 GGTATTTAAT GCTCACTGGT GTCTGGAGAA GCAAATGAAT ATTACTCATA GGCACATGCA GATTTGTGAT AAATGTGGCA 000800 000801 ATAAGTTTGT CCTGGAAAGT GAGCTATATC TTCACCGGCA AACAGACTGT GAAAAAAACA TTTAGTTTGT TGCCTGTAAT 000880 000881 AAATCGTTCA AGAAACTGGA TCCTTCATGA ACATATCAAG ATCGTCCATG GATATGAAGA AAAGAAATTT TCCTGTGAAA 000960 000961 TTTGTGAGAA AAAATTCTAT GCCATGGCTC ATGTGCGAAA ACACATGGTT GCACACATGA AAGACATGCC ATTTACATGT 001040 001041 GAAACCTGTG GAAAATCATT CAAATGCAGT ATGTCACTCA TGGGGCACTC CCTGCAGCAT TCTGGAGAGA AGTCCTTCAG 001120 001121 ATGCGAGAAC TGTGACGAAA GGTTTCAGTA CAATTACCAG CTACACACCC ACATGAGCAT CCACGTTGGG CACAAACAGT 001200 001201 TCATGTGCCA GTGGTGTGGC AAGGATTTCA ACACGAAGCA GTATTTTCAT GAACACATGA AAACAAACAC TGGAGAGAAA 001280 001281 CCCTTTATCT GTGAAATCTG TGGCAAAAG |
Predicted Small Protein
| Name | NONHSAT089856_smProtein_197:457 |
| Length | 87 |
| Molecular weight | 9980.5739 |
| Aromaticity | 0.0348837209302 |
| Instability index | 77.8315116279 |
| Isoelectric point | 4.45965576172 |
| Runs | 9 |
| Runs residual | 0.0349704963554 |
| Runs probability | 0.0395984219513 |
| Amino acid sequence | MSKLHLHETEEQPHFRETGAESDVHAIKEDQENSDDTEEEEEEEEEVFYKREQIIVEVNL NNQTLNVPKGEKGTSSQSKETPVLKQ |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLHHHHHHHHHHHHLEEEEEEEEL LLLEELLLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
