Difference between revisions of "NONHSAT090160"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCCAGTGGGCACACTCCCAGGCGGCGCTCCGGCCCCGCGCTCCCTCCCTCTGCCTTTCATTCCCAGCTGTCAACATCCTGGAAGCTTTGAAGCTCAGGAAAGAAGAGAAATCCACTGAGAACAGTCTGTAAAGAGTGAGAAGTGGACCTTGGACCACCCTGTCTGGAGTCATTCCCTGGGCTTCTCCAGCCCCTGAAGAAAATagtctcactcttgtcacccaggctggagtgcaatggctcgatctcagctcactgcaacctctgactcctgggttcaagatattctcctgcctcagtctcccgagtagctggtattacaggcatgcgccaccacacctggctaatttttgtatttttagtagagacagagattcaccatgttggccaggctggtcttgaactgctgaccttgggtgatctgtccacctcagcctcccaaagtgctgggattacagGTATCCTAGGAATACCTGCCTGCTTAGACCCTCTATAAAAGCTCTGTGCATCCTGCCACTGAGGACTCCGAAGAGGTAGCAGTCTTCTGAAAGACTTCAACTGTGAGGACATGTCGTTCAGATTTGGCCAACATCTCATCAAGCCCTCTGTAGTGTTTCTCAAAACAGAACTGTCCTTCGCTCTTGTGAATAGGAAACCTGTGGTACCAGGACGTATCCTTTCTTTTTTTTTTTGGAGAGGGAAAATAAAAGTCTTCTGAGCCTAACCAGCCAAATGAATATAAATACAAGATTGGCCTCCAGTCTGTCCAAAAAGGTAAATAAAGAATCCATCTCCCTCCCACTTCGGAGACACCAGGTAAGATGTTACTCATATTTATTCTGAATCCAGTTGGTGGCACCAGTAATATGCTTGATCAATGTTGCAGAACTTCTGAGGAGAGTTGCTTAGCAACCGTGGCTTTGGAGGTGAATTTTTGCTTGACCTTTTCACTACCATAGCTGAGTAAATAAATAGGTGCTTCTAAAATGAGCCCAGTGAATATCACGGGCACTTGGTTTTCAGCTTATCTGTTGTGAATTTTAATAGTAGATTGAGTGGTGCCTTTGTGATGTGGAAGTAAGATATGTGAGGATTTGAGACTGACTTTGTTGCTTTACCTCTTGGAGATCATTCAAGTTGTGCGttttaattaaatttatattatagatatacttacaaattttttttaaaaaatattaGGACCTGAAATAGCATTTTCTCTTGGGAAAAATACCAGCTTGCAGATCATTGACCAGTGTCATTGGTGGAGTTGTTTTATTTCCCTCTGACCACTGAGTTGTAGTCTTTCCTCCTATAGACTTCAATAGGAGCTTTATTCTTTTGCAGTGGGAATAACAAGTATTGGTGAAATGCTTGGGAAGTTATCTTTATGTTGTTAAAAGTTTCACTCCTGATTGTGTGCATATGAATTTTGTACGGACTCTTCAGGATGTTTTTCTCTTTCCTCCTTCACTTAGTTTGCCATGCAGAAGGCAACAGAATAAAATTTGATATTTTCAGATAATAAGTATTTTCCACGCTGAGACATGATTTTGCTTTGAAATGAATTTCTTAGTAATTCTGAATGTACAAATATGCCAAGAGGTTTTTCAGAGTAAGCTACATTTTTTTTCCAGTGAAAATGTGGAAAGTGCCTGAGAACTTTATGAACAAGCTTCTTTTCTAGCCACGTAACTATTGTATGCTAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CCCAGTGGGCACACTCCCAGGCGGCGCTCCGGCCCCGCGCTCCCTCCCTCTGCCTTTCATTCCCAGCTGTCAACATCCTGGAAGCTTTGAAGCTCAGGAAAGAAGAGAAATCCACTGAGAACAGTCTGTAAAGAGTGAGAAGTGGACCTTGGACCACCCTGTCTGGAGTCATTCCCTGGGCTTCTCCAGCCCCTGAAGAAAATagtctcactcttgtcacccaggctggagtgcaatggctcgatctcagctcactgcaacctctgactcctgggttcaagatattctcctgcctcagtctcccgagtagctggtattacaggcatgcgccaccacacctggctaatttttgtatttttagtagagacagagattcaccatgttggccaggctggtcttgaactgctgaccttgggtgatctgtccacctcagcctcccaaagtgctgggattacagGTATCCTAGGAATACCTGCCTGCTTAGACCCTCTATAAAAGCTCTGTGCATCCTGCCACTGAGGACTCCGAAGAGGTAGCAGTCTTCTGAAAGACTTCAACTGTGAGGACATGTCGTTCAGATTTGGCCAACATCTCATCAAGCCCTCTGTAGTGTTTCTCAAAACAGAACTGTCCTTCGCTCTTGTGAATAGGAAACCTGTGGTACCAGGACGTATCCTTTCTTTTTTTTTTTGGAGAGGGAAAATAAAAGTCTTCTGAGCCTAACCAGCCAAATGAATATAAATACAAGATTGGCCTCCAGTCTGTCCAAAAAGGTAAATAAAGAATCCATCTCCCTCCCACTTCGGAGACACCAGGTAAGATGTTACTCATATTTATTCTGAATCCAGTTGGTGGCACCAGTAATATGCTTGATCAATGTTGCAGAACTTCTGAGGAGAGTTGCTTAGCAACCGTGGCTTTGGAGGTGAATTTTTGCTTGACCTTTTCACTACCATAGCTGAGTAAATAAATAGGTGCTTCTAAAATGAGCCCAGTGAATATCACGGGCACTTGGTTTTCAGCTTATCTGTTGTGAATTTTAATAGTAGATTGAGTGGTGCCTTTGTGATGTGGAAGTAAGATATGTGAGGATTTGAGACTGACTTTGTTGCTTTACCTCTTGGAGATCATTCAAGTTGTGCGttttaattaaatttatattatagatatacttacaaattttttttaaaaaatattaGGACCTGAAATAGCATTTTCTCTTGGGAAAAATACCAGCTTGCAGATCATTGACCAGTGTCATTGGTGGAGTTGTTTTATTTCCCTCTGACCACTGAGTTGTAGTCTTTCCTCCTATAGACTTCAATAGGAGCTTTATTCTTTTGCAGTGGGAATAACAAGTATTGGTGAAATGCTTGGGAAGTTATCTTTATGTTGTTAAAAGTTTCACTCCTGATTGTGTGCATATGAATTTTGTACGGACTCTTCAGGATGTTTTTCTCTTTCCTCCTTCACTTAGTTTGCCATGCAGAAGGCAACAGAATAAAATTTGATATTTTCAGATAATAAGTATTTTCCACGCTGAGACATGATTTTGCTTTGAAATGAATTTCTTAGTAATTCTGAATGTACAAATATGCCAAGAGGTTTTTCAGAGTAAGCTACATTTTTTTTCCAGTGAAAATGTGGAAAGTGCCTGAGAACTTTATGAACAAGCTTCTTTTCTAGCCACGTAACTATTGTATGCTAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG035295]][[Category:Transcripts]] |
Latest revision as of 00:34, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090160 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1720 nt |
Genomic location |
chr3-:60521543..61237058 |
Exon number |
6 |
Exons |
60521543..60522712,60807613..60807705,61151248..61151501,61152646..61152715,61186291..61186339,61236975..61237058 |
Genome context |
|
Sequence |
000001 CCCAGTGGGC ACACTCCCAG GCGGCGCTCC GGCCCCGCGC TCCCTCCCTC TGCCTTTCAT TCCCAGCTGT CAACATCCTG 000080
000081 GAAGCTTTGA AGCTCAGGAA AGAAGAGAAA TCCACTGAGA ACAGTCTGTA AAGAGTGAGA AGTGGACCTT GGACCACCCT 000160 000161 GTCTGGAGTC ATTCCCTGGG CTTCTCCAGC CCCTGAAGAA AATagtctca ctcttgtcac ccaggctgga gtgcaatggc 000240 000241 tcgatctcag ctcactgcaa cctctgactc ctgggttcaa gatattctcc tgcctcagtc tcccgagtag ctggtattac 000320 000321 aggcatgcgc caccacacct ggctaatttt tgtattttta gtagagacag agattcacca tgttggccag gctggtcttg 000400 000401 aactgctgac cttgggtgat ctgtccacct cagcctccca aagtgctggg attacagGTA TCCTAGGAAT ACCTGCCTGC 000480 000481 TTAGACCCTC TATAAAAGCT CTGTGCATCC TGCCACTGAG GACTCCGAAG AGGTAGCAGT CTTCTGAAAG ACTTCAACTG 000560 000561 TGAGGACATG TCGTTCAGAT TTGGCCAACA TCTCATCAAG CCCTCTGTAG TGTTTCTCAA AACAGAACTG TCCTTCGCTC 000640 000641 TTGTGAATAG GAAACCTGTG GTACCAGGAC GTATCCTTTC TTTTTTTTTT TGGAGAGGGA AAATAAAAGT CTTCTGAGCC 000720 000721 TAACCAGCCA AATGAATATA AATACAAGAT TGGCCTCCAG TCTGTCCAAA AAGGTAAATA AAGAATCCAT CTCCCTCCCA 000800 000801 CTTCGGAGAC ACCAGGTAAG ATGTTACTCA TATTTATTCT GAATCCAGTT GGTGGCACCA GTAATATGCT TGATCAATGT 000880 000881 TGCAGAACTT CTGAGGAGAG TTGCTTAGCA ACCGTGGCTT TGGAGGTGAA TTTTTGCTTG ACCTTTTCAC TACCATAGCT 000960 000961 GAGTAAATAA ATAGGTGCTT CTAAAATGAG CCCAGTGAAT ATCACGGGCA CTTGGTTTTC AGCTTATCTG TTGTGAATTT 001040 001041 TAATAGTAGA TTGAGTGGTG CCTTTGTGAT GTGGAAGTAA GATATGTGAG GATTTGAGAC TGACTTTGTT GCTTTACCTC 001120 001121 TTGGAGATCA TTCAAGTTGT GCGttttaat taaatttata ttatagatat acttacaaat tttttttaaa aaatattaGG 001200 001201 ACCTGAAATA GCATTTTCTC TTGGGAAAAA TACCAGCTTG CAGATCATTG ACCAGTGTCA TTGGTGGAGT TGTTTTATTT 001280 001281 CCCTCTGACC ACTGAGTTGT AGTCTTTCCT CCTATAGACT TCAATAGGAG CTTTATTCTT TTGCAGTGGG AATAACAAGT 001360 001361 ATTGGTGAAA TGCTTGGGAA GTTATCTTTA TGTTGTTAAA AGTTTCACTC CTGATTGTGT GCATATGAAT TTTGTACGGA 001440 001441 CTCTTCAGGA TGTTTTTCTC TTTCCTCCTT CACTTAGTTT GCCATGCAGA AGGCAACAGA ATAAAATTTG ATATTTTCAG 001520 001521 ATAATAAGTA TTTTCCACGC TGAGACATGA TTTTGCTTTG AAATGAATTT CTTAGTAATT CTGAATGTAC AAATATGCCA 001600 001601 AGAGGTTTTT CAGAGTAAGC TACATTTTTT TTCCAGTGAA AATGTGGAAA GTGCCTGAGA ACTTTATGAA CAAGCTTCTT 001680 001681 TTCTAGCCAC GTAACTATTG TATGCTAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT090160_smProtein_731:841 |
Length | 37 |
Molecular weight | 4253.9504 |
Aromaticity | 0.0833333333333 |
Instability index | 64.3555555556 |
Isoelectric point | 10.545715332 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0433139021374 |
Amino acid sequence | MNINTRLASSLSKKVNKESISLPLRRHQVRCYSYLF |
Secondary structure | LLLLHHHHHHHHHHLLLLLLLLLLLLLEEEEEEEEL |
PRMN | - |
PiMo | - |