Difference between revisions of "NONHSAT090239"
| Line 42: | Line 42: | ||
sequence = <dnaseq>TctttgcttctcaaaggtgatgtcagagaccagcagccatgaaattatctgcaagctcattcaaattgcataatcctagtaactcagaatctgcatttaaacaaaacccctaagcaatatgaatgcacactggagtttaagaagcactgTTCCAATTAACCCATAACACATCCCCCTTAAAGGACCATCCTACAGCCCCTCTGTGATTTGCCAGAGTGGAACTATGTGGTTCAAACCCTCAGTCTCCCCAGGTACTGGCTctgtatgaagccctattttaaatgcttctacagacaaccattcattttaaccttgctacagctctgtgggactggcttactattattcttaactggaataaaacaaggttcagagaagtgaagtgacttgtccaagctagtgacggattcaggattttaatacaggttccatttgattccaaagttggttctctttacaATAAAACAGATGTCACCGTGCTTCATCCAGAAACAGGTGAGCACAGAGTAGGTGAGACAGCTGGTGCAATCCTAGCTCTTCTTGCTTTGGACTGAAACTTGCAAGACCCTTTCTCTGCTGCTGCCTGAAACTTGCAAGACCCTTACTCTGCTGCTAGCAATGAAAGAGAGACCAGTTGTCCTGCTCCAGCAGCAAGTCAATATCTCACCTTGAAAATGACTAAAAAAAAAAAAAAAGTGGTGTTCTCATCACCACTGAGAACTCCCCCAAGAGAACACAGTCTGTTTGGCCTCTTGGTAGGACCCTTCTGGATATGTAGTTCATTTCCTCTTCAGCAGAAAATTTGGTCTCTTGAGTATTAAAACGTATGCTTTTCTTTTGTGTTCTCTTTTTGCAAGCCAAAAATCATCCAACCAGACAACCCTTTCTCTGTCATGTATGGGACATGTACAATTTTTAAATAGTTGTTAAAAAAAAAATTGGAACTTCAGTTTAAATGGACTAAAACTTCCTACGTAGCGTGCAACTGGGGTCAGTATGGCCAAGATGTTAAGTGCCCGTGAAGTCACCTCTTTTGTCTTTTAAAAGGATAATCAATGCCATAGACTAGGTTGAAAACTAGATCCAAGCAGAGGCCCCTCACATTCCTTGGGCATGTAAAATGGACAAGTAGTAGACTGAATTGTCATTTCTTCATAAAAGTGGTTGCCAGGATTTGGGTCTGTATGAGTCAGAGCAGCCTAGCTACTCCAACGAACAGCAAGTCTCACAGGCCTATCAAAAGAGCTGTTTCCTGCTTTTGCTCACATCATAATCTGATGCAAGTGAGGCAGGGGAGGGGGCGAGAGGAGGGGAAGAGTGAGTGGGAAGGTAGTGCTCTGCTCCGCCCAGACATTCAGGCTGATAATTCTTCTGAGGGCTGCATCTGCCATCTTCCAGAActgcaatgtccaatatggcagtgatgtcatatgtgaccatttatatttaaatgaatcaaaagtaaaaattcactttctctgttgcattagccatatttccagttctcaaaagccacatgtgactagattctactatactagatgcacagaatagaagatttccataattccagaaaattctatttgacCACTTCCTCTAAATTTCAGAGTGCTCCACCGGATTGTCTGAATCCGACCTGCAGACAAGAAAAGAGAAGGTAAAGAGTCAGTGAGGACtAACCCACAGCCCCAGGCCCCTTCTATTTCTGTCATGTTGTGGAGCACTGACCTTTTACAAAAGCTCTCCAGGGGATTCAGAGCTTTGGGAACCAATGATGCCAAGAGCTGGGCAACGTGATCTCTACTGCTGCTTCCAAGCCTGACAGCATTATCCTCCACGAACCTCTCCTTTGTAAccttttggaggattctgaggatgccagacgtgaaaagtgcctggcacagtgcttggtatgtaggaggcATGGGATGAACTGTGTTAGCCAGTGGCCTGCACAAGCTTATCTTCACCcctgcagggatgggctgatcactgcctctccaggcagccattttcatggatggtcagctaggctatgaaacagttcattctctggaggtgccaaagccagtttcccagtgattcgcatcagcccggtttcacttttgtcttctgCTGTTAGACATTTCCTCTTGTCAGAGCAGAAACCTCAGACTTCATATTCTGTGGATAAATCACCCTCGAATTGCTCCCCCCTTCCTCAATCACCGCCAAAAAATGCAAAAATAACCAGATTCTTAGCCTAAACACAAGCACTTTCCATGTACTATCTAATCCAAACATCCCAAaaacacaagtttaaaaacatgctggagatcacacagctaaaaagtcacaaatcaagcctagaccccaaggggtctaactccaagttcatggacttaaccacCTCACAATATTCTTGCCTGTCTGAGCCCTTTAGCTATTCAGCAGTGAAACCTGTTACCGTGAGATGGCACTCCTGATCACAGATCCTTAGCTGGTGGCAGTGCTGGTGTTTACAGCCAGGTTTTCCAGAGTCATTGTGGTTTGTGAAAAGGAATAATCACAGCAGATCTGGGCTAAATGCAGGTTGCCGCTAGAAGACATGGCAAATGATGGCTGGCATTGCAAATACAGGCAAAAAACATACACATACATGAAAAAATAGCAGAGGAAGAGGCAAACTGCAGAGGGCATAGAA</dnaseq>| | sequence = <dnaseq>TctttgcttctcaaaggtgatgtcagagaccagcagccatgaaattatctgcaagctcattcaaattgcataatcctagtaactcagaatctgcatttaaacaaaacccctaagcaatatgaatgcacactggagtttaagaagcactgTTCCAATTAACCCATAACACATCCCCCTTAAAGGACCATCCTACAGCCCCTCTGTGATTTGCCAGAGTGGAACTATGTGGTTCAAACCCTCAGTCTCCCCAGGTACTGGCTctgtatgaagccctattttaaatgcttctacagacaaccattcattttaaccttgctacagctctgtgggactggcttactattattcttaactggaataaaacaaggttcagagaagtgaagtgacttgtccaagctagtgacggattcaggattttaatacaggttccatttgattccaaagttggttctctttacaATAAAACAGATGTCACCGTGCTTCATCCAGAAACAGGTGAGCACAGAGTAGGTGAGACAGCTGGTGCAATCCTAGCTCTTCTTGCTTTGGACTGAAACTTGCAAGACCCTTTCTCTGCTGCTGCCTGAAACTTGCAAGACCCTTACTCTGCTGCTAGCAATGAAAGAGAGACCAGTTGTCCTGCTCCAGCAGCAAGTCAATATCTCACCTTGAAAATGACTAAAAAAAAAAAAAAAGTGGTGTTCTCATCACCACTGAGAACTCCCCCAAGAGAACACAGTCTGTTTGGCCTCTTGGTAGGACCCTTCTGGATATGTAGTTCATTTCCTCTTCAGCAGAAAATTTGGTCTCTTGAGTATTAAAACGTATGCTTTTCTTTTGTGTTCTCTTTTTGCAAGCCAAAAATCATCCAACCAGACAACCCTTTCTCTGTCATGTATGGGACATGTACAATTTTTAAATAGTTGTTAAAAAAAAAATTGGAACTTCAGTTTAAATGGACTAAAACTTCCTACGTAGCGTGCAACTGGGGTCAGTATGGCCAAGATGTTAAGTGCCCGTGAAGTCACCTCTTTTGTCTTTTAAAAGGATAATCAATGCCATAGACTAGGTTGAAAACTAGATCCAAGCAGAGGCCCCTCACATTCCTTGGGCATGTAAAATGGACAAGTAGTAGACTGAATTGTCATTTCTTCATAAAAGTGGTTGCCAGGATTTGGGTCTGTATGAGTCAGAGCAGCCTAGCTACTCCAACGAACAGCAAGTCTCACAGGCCTATCAAAAGAGCTGTTTCCTGCTTTTGCTCACATCATAATCTGATGCAAGTGAGGCAGGGGAGGGGGCGAGAGGAGGGGAAGAGTGAGTGGGAAGGTAGTGCTCTGCTCCGCCCAGACATTCAGGCTGATAATTCTTCTGAGGGCTGCATCTGCCATCTTCCAGAActgcaatgtccaatatggcagtgatgtcatatgtgaccatttatatttaaatgaatcaaaagtaaaaattcactttctctgttgcattagccatatttccagttctcaaaagccacatgtgactagattctactatactagatgcacagaatagaagatttccataattccagaaaattctatttgacCACTTCCTCTAAATTTCAGAGTGCTCCACCGGATTGTCTGAATCCGACCTGCAGACAAGAAAAGAGAAGGTAAAGAGTCAGTGAGGACtAACCCACAGCCCCAGGCCCCTTCTATTTCTGTCATGTTGTGGAGCACTGACCTTTTACAAAAGCTCTCCAGGGGATTCAGAGCTTTGGGAACCAATGATGCCAAGAGCTGGGCAACGTGATCTCTACTGCTGCTTCCAAGCCTGACAGCATTATCCTCCACGAACCTCTCCTTTGTAAccttttggaggattctgaggatgccagacgtgaaaagtgcctggcacagtgcttggtatgtaggaggcATGGGATGAACTGTGTTAGCCAGTGGCCTGCACAAGCTTATCTTCACCcctgcagggatgggctgatcactgcctctccaggcagccattttcatggatggtcagctaggctatgaaacagttcattctctggaggtgccaaagccagtttcccagtgattcgcatcagcccggtttcacttttgtcttctgCTGTTAGACATTTCCTCTTGTCAGAGCAGAAACCTCAGACTTCATATTCTGTGGATAAATCACCCTCGAATTGCTCCCCCCTTCCTCAATCACCGCCAAAAAATGCAAAAATAACCAGATTCTTAGCCTAAACACAAGCACTTTCCATGTACTATCTAATCCAAACATCCCAAaaacacaagtttaaaaacatgctggagatcacacagctaaaaagtcacaaatcaagcctagaccccaaggggtctaactccaagttcatggacttaaccacCTCACAATATTCTTGCCTGTCTGAGCCCTTTAGCTATTCAGCAGTGAAACCTGTTACCGTGAGATGGCACTCCTGATCACAGATCCTTAGCTGGTGGCAGTGCTGGTGTTTACAGCCAGGTTTTCCAGAGTCATTGTGGTTTGTGAAAAGGAATAATCACAGCAGATCTGGGCTAAATGCAGGTTGCCGCTAGAAGACATGGCAAATGATGGCTGGCATTGCAAATACAGGCAAAAAACATACACATACATGAAAAAATAGCAGAGGAAGAGGCAAACTGCAGAGGGCATAGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG035328]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG035328]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:34, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT090239 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2683 nt |
| Genomic location |
chr3+:64438806..64457187 |
| Exon number |
6 |
| Exons |
64438806..64440482,64442500..64442677,64444965..64445080,64447943..64448409,64456256..64456373,64457061..64457187 |
| Genome context |
|
| Sequence |
000001 Tctttgcttc tcaaaggtga tgtcagagac cagcagccat gaaattatct gcaagctcat tcaaattgca taatcctagt 000080
000081 aactcagaat ctgcatttaa acaaaacccc taagcaatat gaatgcacac tggagtttaa gaagcactgT TCCAATTAAC 000160 000161 CCATAACACA TCCCCCTTAA AGGACCATCC TACAGCCCCT CTGTGATTTG CCAGAGTGGA ACTATGTGGT TCAAACCCTC 000240 000241 AGTCTCCCCA GGTACTGGCT ctgtatgaag ccctatttta aatgcttcta cagacaacca ttcattttaa ccttgctaca 000320 000321 gctctgtggg actggcttac tattattctt aactggaata aaacaaggtt cagagaagtg aagtgacttg tccaagctag 000400 000401 tgacggattc aggattttaa tacaggttcc atttgattcc aaagttggtt ctctttacaA TAAAACAGAT GTCACCGTGC 000480 000481 TTCATCCAGA AACAGGTGAG CACAGAGTAG GTGAGACAGC TGGTGCAATC CTAGCTCTTC TTGCTTTGGA CTGAAACTTG 000560 000561 CAAGACCCTT TCTCTGCTGC TGCCTGAAAC TTGCAAGACC CTTACTCTGC TGCTAGCAAT GAAAGAGAGA CCAGTTGTCC 000640 000641 TGCTCCAGCA GCAAGTCAAT ATCTCACCTT GAAAATGACT AAAAAAAAAA AAAAAGTGGT GTTCTCATCA CCACTGAGAA 000720 000721 CTCCCCCAAG AGAACACAGT CTGTTTGGCC TCTTGGTAGG ACCCTTCTGG ATATGTAGTT CATTTCCTCT TCAGCAGAAA 000800 000801 ATTTGGTCTC TTGAGTATTA AAACGTATGC TTTTCTTTTG TGTTCTCTTT TTGCAAGCCA AAAATCATCC AACCAGACAA 000880 000881 CCCTTTCTCT GTCATGTATG GGACATGTAC AATTTTTAAA TAGTTGTTAA AAAAAAAATT GGAACTTCAG TTTAAATGGA 000960 000961 CTAAAACTTC CTACGTAGCG TGCAACTGGG GTCAGTATGG CCAAGATGTT AAGTGCCCGT GAAGTCACCT CTTTTGTCTT 001040 001041 TTAAAAGGAT AATCAATGCC ATAGACTAGG TTGAAAACTA GATCCAAGCA GAGGCCCCTC ACATTCCTTG GGCATGTAAA 001120 001121 ATGGACAAGT AGTAGACTGA ATTGTCATTT CTTCATAAAA GTGGTTGCCA GGATTTGGGT CTGTATGAGT CAGAGCAGCC 001200 001201 TAGCTACTCC AACGAACAGC AAGTCTCACA GGCCTATCAA AAGAGCTGTT TCCTGCTTTT GCTCACATCA TAATCTGATG 001280 001281 CAAGTGAGGC AGGGGAGGGG GCGAGAGGAG GGGAAGAGTG AGTGGGAAGG TAGTGCTCTG CTCCGCCCAG ACATTCAGGC 001360 001361 TGATAATTCT TCTGAGGGCT GCATCTGCCA TCTTCCAGAA ctgcaatgtc caatatggca gtgatgtcat atgtgaccat 001440 001441 ttatatttaa atgaatcaaa agtaaaaatt cactttctct gttgcattag ccatatttcc agttctcaaa agccacatgt 001520 001521 gactagattc tactatacta gatgcacaga atagaagatt tccataattc cagaaaattc tatttgacCA CTTCCTCTAA 001600 001601 ATTTCAGAGT GCTCCACCGG ATTGTCTGAA TCCGACCTGC AGACAAGAAA AGAGAAGGTA AAGAGTCAGT GAGGACtAAC 001680 001681 CCACAGCCCC AGGCCCCTTC TATTTCTGTC ATGTTGTGGA GCACTGACCT TTTACAAAAG CTCTCCAGGG GATTCAGAGC 001760 001761 TTTGGGAACC AATGATGCCA AGAGCTGGGC AACGTGATCT CTACTGCTGC TTCCAAGCCT GACAGCATTA TCCTCCACGA 001840 001841 ACCTCTCCTT TGTAAccttt tggaggattc tgaggatgcc agacgtgaaa agtgcctggc acagtgcttg gtatgtagga 001920 001921 ggcATGGGAT GAACTGTGTT AGCCAGTGGC CTGCACAAGC TTATCTTCAC Ccctgcaggg atgggctgat cactgcctct 002000 002001 ccaggcagcc attttcatgg atggtcagct aggctatgaa acagttcatt ctctggaggt gccaaagcca gtttcccagt 002080 002081 gattcgcatc agcccggttt cacttttgtc ttctgCTGTT AGACATTTCC TCTTGTCAGA GCAGAAACCT CAGACTTCAT 002160 002161 ATTCTGTGGA TAAATCACCC TCGAATTGCT CCCCCCTTCC TCAATCACCG CCAAAAAATG CAAAAATAAC CAGATTCTTA 002240 002241 GCCTAAACAC AAGCACTTTC CATGTACTAT CTAATCCAAA CATCCCAAaa acacaagttt aaaaacatgc tggagatcac 002320 002321 acagctaaaa agtcacaaat caagcctaga ccccaagggg tctaactcca agttcatgga cttaaccacC TCACAATATT 002400 002401 CTTGCCTGTC TGAGCCCTTT AGCTATTCAG CAGTGAAACC TGTTACCGTG AGATGGCACT CCTGATCACA GATCCTTAGC 002480 002481 TGGTGGCAGT GCTGGTGTTT ACAGCCAGGT TTTCCAGAGT CATTGTGGTT TGTGAAAAGG AATAATCACA GCAGATCTGG 002560 002561 GCTAAATGCA GGTTGCCGCT AGAAGACATG GCAAATGATG GCTGGCATTG CAAATACAGG CAAAAAACAT ACACATACAT 002640 002641 GAAAAAATAG CAGAGGAAGA GGCAAACTGC AGAGGGCATA GAA |
Predicted Small Protein
| Name | NONHSAT090239_smProtein_1184:1423 |
| Length | 80 |
| Molecular weight | 8846.8857 |
| Aromaticity | 0.0379746835443 |
| Instability index | 61.7240506329 |
| Isoelectric point | 7.69158935547 |
| Runs | 8 |
| Runs residual | 0.0390150858332 |
| Runs probability | 0.031962109168 |
| Amino acid sequence | MSQSSLATPTNSKSHRPIKRAVSCFCSHHNLMQVRQGRGREEGKSEWEGSALLRPDIQAD NSSEGCICHLPELQCPIWQ |
| Secondary structure | LLLLLLLLLLLLLLLLHHHHHHHHLLLLLLHHHEELLLLLLLLLLLLLLLLLLLLLLLLL LLLLLEEELLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
