Difference between revisions of "NONHSAT092337"
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sequence = <dnaseq>GAGGCAGCAGACCGGGTGGGGTCGGTGTCGCGCCTGCGCCCGCCCGGACGCCTCGGGCCCGCCCGCTCCGCACCCTGGAAACCCCTGCACTCAGCCCCCCGGCGTCCCCACGCTCTCGGCCCTGCTGCGCCGGCGGCGGCCATCTCTGGGCGGCGGCGGCGGGCGGTGTTTGCGCGGTCGGTGAGACCCGCGCGGGTGAGACGCTGGCCCTCCTTACAGCCTAGAAAAAATGACAGATCTCGTAGCTGTTTGGGATGTTGCTTTAAGTGACGGAGTCCACAAGATCGAATTTGAACATGGGACTACATCAGGCAAACGAGTAGTATATGTAGATGGAAAGGAAGAGATAAGAAAAGAGTGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGGAGCTGCAAAGACAAAAGCGACCATAAATATAGACGCTATCAGTGGTTTTGCTTATGAATATACTCTGGAAATTAATGGGAAAAGTCTCAAGAAGTATATGGAGGACAGATCAAAAACCACCAATACTTGGGTATTACACATGGATGAAAAAGATGCTATGGACGTATGGTGCAATGGTAAAAAATTGGAGACAGCGGTAAGTTGACTATTTGATGACTCTAAGTGCCATGTGTCTCAGTTACCATTGAATTGTTGCTGCATTTCCTAATTATAGAGATCTTATAATGAATCAAGGCCCTCTTGATAAAAACAAAAAAGGGATTAAGTACTCCTGACTTCAGATTCTGAAAACCTTTGCCAGATGGTGCCTGG</dnaseq>| | sequence = <dnaseq>GAGGCAGCAGACCGGGTGGGGTCGGTGTCGCGCCTGCGCCCGCCCGGACGCCTCGGGCCCGCCCGCTCCGCACCCTGGAAACCCCTGCACTCAGCCCCCCGGCGTCCCCACGCTCTCGGCCCTGCTGCGCCGGCGGCGGCCATCTCTGGGCGGCGGCGGCGGGCGGTGTTTGCGCGGTCGGTGAGACCCGCGCGGGTGAGACGCTGGCCCTCCTTACAGCCTAGAAAAAATGACAGATCTCGTAGCTGTTTGGGATGTTGCTTTAAGTGACGGAGTCCACAAGATCGAATTTGAACATGGGACTACATCAGGCAAACGAGTAGTATATGTAGATGGAAAGGAAGAGATAAGAAAAGAGTGGATGTTCAAATTAGTGGGCAAAGAAACATTCTATGTTGGAGCTGCAAAGACAAAAGCGACCATAAATATAGACGCTATCAGTGGTTTTGCTTATGAATATACTCTGGAAATTAATGGGAAAAGTCTCAAGAAGTATATGGAGGACAGATCAAAAACCACCAATACTTGGGTATTACACATGGATGAAAAAGATGCTATGGACGTATGGTGCAATGGTAAAAAATTGGAGACAGCGGTAAGTTGACTATTTGATGACTCTAAGTGCCATGTGTCTCAGTTACCATTGAATTGTTGCTGCATTTCCTAATTATAGAGATCTTATAATGAATCAAGGCCCTCTTGATAAAAACAAAAAAGGGATTAAGTACTCCTGACTTCAGATTCTGAAAACCTTTGCCAGATGGTGCCTGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG036199]] | + | [[Category:Sense]][[Category:NONHSAG036199]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:42, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092337 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
771 nt |
Genomic location |
chr3+:138327782..138348174 |
Exon number |
4 |
Exons |
138327782..138327988,138340249..138340381,138341030..138341234,138347949..138348174 |
Genome context |
|
Sequence |
000001 GAGGCAGCAG ACCGGGTGGG GTCGGTGTCG CGCCTGCGCC CGCCCGGACG CCTCGGGCCC GCCCGCTCCG CACCCTGGAA 000080
000081 ACCCCTGCAC TCAGCCCCCC GGCGTCCCCA CGCTCTCGGC CCTGCTGCGC CGGCGGCGGC CATCTCTGGG CGGCGGCGGC 000160 000161 GGGCGGTGTT TGCGCGGTCG GTGAGACCCG CGCGGGTGAG ACGCTGGCCC TCCTTACAGC CTAGAAAAAA TGACAGATCT 000240 000241 CGTAGCTGTT TGGGATGTTG CTTTAAGTGA CGGAGTCCAC AAGATCGAAT TTGAACATGG GACTACATCA GGCAAACGAG 000320 000321 TAGTATATGT AGATGGAAAG GAAGAGATAA GAAAAGAGTG GATGTTCAAA TTAGTGGGCA AAGAAACATT CTATGTTGGA 000400 000401 GCTGCAAAGA CAAAAGCGAC CATAAATATA GACGCTATCA GTGGTTTTGC TTATGAATAT ACTCTGGAAA TTAATGGGAA 000480 000481 AAGTCTCAAG AAGTATATGG AGGACAGATC AAAAACCACC AATACTTGGG TATTACACAT GGATGAAAAA GATGCTATGG 000560 000561 ACGTATGGTG CAATGGTAAA AAATTGGAGA CAGCGGTAAG TTGACTATTT GATGACTCTA AGTGCCATGT GTCTCAGTTA 000640 000641 CCATTGAATT GTTGCTGCAT TTCCTAATTA TAGAGATCTT ATAATGAATC AAGGCCCTCT TGATAAAAAC AAAAAAGGGA 000720 000721 TTAAGTACTC CTGACTTCAG ATTCTGAAAA CCTTTGCCAG ATGGTGCCTG G |
Predicted Small Protein
Name | NONHSAT092337_smProtein_452:598 |
Length | 49 |
Molecular weight | 5992.1857 |
Aromaticity | 0.166666666667 |
Instability index | 49.35 |
Isoelectric point | 10.798034668 |
Runs | 8 |
Runs residual | 0.00109649122807 |
Runs probability | 0.0457737148914 |
Amino acid sequence | MNILWKLMGKVSRSIWRTDQKPPILGYYTWMKKMLWTYGAMVKNWRQR |
Secondary structure | LLHHHHHHLLLLHHHHHLLLLLLLEEEHHHHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |