Difference between revisions of "NONHSAT092495"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
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sequence = <dnaseq>agaagccaaaaaggcccaagtccacaagacagaaagaataggtgaaaagtccatgtcatctcatttttggagatggacatggacaggggctgaaactgcagtaccagcagatggggagcttaagaaggaagctagttcatggcacagcacccgtaaagtccccagaattggaggcaccagattcttctgaaagaaaagGAGCAATTCAGCACTTGTCATGCAGATAAGAGGTCAACACCCCAGGACGGAGTGAAAACCTAAGATGGACTCAACGACTCTCTTACCGTCCAGCTCTCAAGTCCCTTCTCTTGTGAAAATGGAAAAGTTGAACTACAGTTGAGATATTATTCCCAGGTGTTCTTTGGAACACAGGGGATTTCTCCAAAAGGCACAGAACAAATTGCCTCCAAACAGCCAAGATTCCAGCAGAAGCTGGAGTAGCAGACTACTTGGATCTTCAAAGTACCTGGCCCTGAGTCAGTTAAGGAAGATCTTTTCTTCTCTTTTGTACAATCCTATGATGAGAGCTGCAAAGTGAACTGACTAAGAGCTTCTGCCTTGATCATTGACCTCCCAATCCTAATAATATGTTCACTGGCCAAACTTCCTAATCGATTTGTCTTTTGGATATAACGTTCCTCCTACTGTTTGCCTGATTGAGAAATCTGCTACAGAACATGACCGGTTAGCATTCCCACCAACCCCAGTGCTACACTGACTGTCTTTCGATGGACTTTGCTCCTTGCTGCCTCTCTGAGGTCCCAGACCTTCAGAGTGACCTTCACAGCTCTGCCTAACTTTCTGTCATACTTCTATCAAGAGAGACAGCTAAATCAATATTTTTAATGTGCTTTGCTGTCGGAATTCGATGATCTGTCACAGTTCTTGCCCAATACACCCCATCATTATTGTTAAAATGTTTTTAGCTTTGTTTGTAGAATTGCTTTAACTGGTTTCATCTCTGGGAGCTACACTTTGAAATATAACTTTAGCAACATTTTACTATACTTTTTCACAACCCAGAGCAGTACTATTTTATGCTTAGTGGTTAAACTAATTCCATAAATCTTTTGCAACTATCCTCTATTCTTTTTCTTGTAATTTTTACCTGGGAAGGTTTTTACTGATAATCATCCTATCCTGAGTCATCCCACAAACCAATCTGTCTCACTAATCATTGCTTCTAACCTACAGACTAAGCATAACTTCTGCTAAATGATCTTTGATAAGATGCTATGACTCTATAAAGTCTTTGATATTCATGTCTAAATTTAATCACTTGTAGATTTTCATAGAATCAATCTTTCACTTCTACAATTGGGAGTATTTATAAGTTGTTTATCTTAAACAGTTCCTCTATCACGCTTTTCACGTTAAATAAAGCAA</dnaseq>|
 
sequence = <dnaseq>agaagccaaaaaggcccaagtccacaagacagaaagaataggtgaaaagtccatgtcatctcatttttggagatggacatggacaggggctgaaactgcagtaccagcagatggggagcttaagaaggaagctagttcatggcacagcacccgtaaagtccccagaattggaggcaccagattcttctgaaagaaaagGAGCAATTCAGCACTTGTCATGCAGATAAGAGGTCAACACCCCAGGACGGAGTGAAAACCTAAGATGGACTCAACGACTCTCTTACCGTCCAGCTCTCAAGTCCCTTCTCTTGTGAAAATGGAAAAGTTGAACTACAGTTGAGATATTATTCCCAGGTGTTCTTTGGAACACAGGGGATTTCTCCAAAAGGCACAGAACAAATTGCCTCCAAACAGCCAAGATTCCAGCAGAAGCTGGAGTAGCAGACTACTTGGATCTTCAAAGTACCTGGCCCTGAGTCAGTTAAGGAAGATCTTTTCTTCTCTTTTGTACAATCCTATGATGAGAGCTGCAAAGTGAACTGACTAAGAGCTTCTGCCTTGATCATTGACCTCCCAATCCTAATAATATGTTCACTGGCCAAACTTCCTAATCGATTTGTCTTTTGGATATAACGTTCCTCCTACTGTTTGCCTGATTGAGAAATCTGCTACAGAACATGACCGGTTAGCATTCCCACCAACCCCAGTGCTACACTGACTGTCTTTCGATGGACTTTGCTCCTTGCTGCCTCTCTGAGGTCCCAGACCTTCAGAGTGACCTTCACAGCTCTGCCTAACTTTCTGTCATACTTCTATCAAGAGAGACAGCTAAATCAATATTTTTAATGTGCTTTGCTGTCGGAATTCGATGATCTGTCACAGTTCTTGCCCAATACACCCCATCATTATTGTTAAAATGTTTTTAGCTTTGTTTGTAGAATTGCTTTAACTGGTTTCATCTCTGGGAGCTACACTTTGAAATATAACTTTAGCAACATTTTACTATACTTTTTCACAACCCAGAGCAGTACTATTTTATGCTTAGTGGTTAAACTAATTCCATAAATCTTTTGCAACTATCCTCTATTCTTTTTCTTGTAATTTTTACCTGGGAAGGTTTTTACTGATAATCATCCTATCCTGAGTCATCCCACAAACCAATCTGTCTCACTAATCATTGCTTCTAACCTACAGACTAAGCATAACTTCTGCTAAATGATCTTTGATAAGATGCTATGACTCTATAAAGTCTTTGATATTCATGTCTAAATTTAATCACTTGTAGATTTTCATAGAATCAATCTTTCACTTCTACAATTGGGAGTATTTATAAGTTGTTTATCTTAAACAGTTCCTCTATCACGCTTTTCACGTTAAATAAAGCAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG036272]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 00:43, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT092495

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1386 nt

Genomic location

chr3+:142645541..142661364

Exon number

3

Exons

142645541..142645738,142652047..142652110,142660241..142661364

Genome context

Sequence
000001 agaagccaaa aaggcccaag tccacaagac agaaagaata ggtgaaaagt ccatgtcatc tcatttttgg agatggacat 000080
000081 ggacaggggc tgaaactgca gtaccagcag atggggagct taagaaggaa gctagttcat ggcacagcac ccgtaaagtc 000160
000161 cccagaattg gaggcaccag attcttctga aagaaaagGA GCAATTCAGC ACTTGTCATG CAGATAAGAG GTCAACACCC 000240
000241 CAGGACGGAG TGAAAACCTA AGATGGACTC AACGACTCTC TTACCGTCCA GCTCTCAAGT CCCTTCTCTT GTGAAAATGG 000320
000321 AAAAGTTGAA CTACAGTTGA GATATTATTC CCAGGTGTTC TTTGGAACAC AGGGGATTTC TCCAAAAGGC ACAGAACAAA 000400
000401 TTGCCTCCAA ACAGCCAAGA TTCCAGCAGA AGCTGGAGTA GCAGACTACT TGGATCTTCA AAGTACCTGG CCCTGAGTCA 000480
000481 GTTAAGGAAG ATCTTTTCTT CTCTTTTGTA CAATCCTATG ATGAGAGCTG CAAAGTGAAC TGACTAAGAG CTTCTGCCTT 000560
000561 GATCATTGAC CTCCCAATCC TAATAATATG TTCACTGGCC AAACTTCCTA ATCGATTTGT CTTTTGGATA TAACGTTCCT 000640
000641 CCTACTGTTT GCCTGATTGA GAAATCTGCT ACAGAACATG ACCGGTTAGC ATTCCCACCA ACCCCAGTGC TACACTGACT 000720
000721 GTCTTTCGAT GGACTTTGCT CCTTGCTGCC TCTCTGAGGT CCCAGACCTT CAGAGTGACC TTCACAGCTC TGCCTAACTT 000800
000801 TCTGTCATAC TTCTATCAAG AGAGACAGCT AAATCAATAT TTTTAATGTG CTTTGCTGTC GGAATTCGAT GATCTGTCAC 000880
000881 AGTTCTTGCC CAATACACCC CATCATTATT GTTAAAATGT TTTTAGCTTT GTTTGTAGAA TTGCTTTAAC TGGTTTCATC 000960
000961 TCTGGGAGCT ACACTTTGAA ATATAACTTT AGCAACATTT TACTATACTT TTTCACAACC CAGAGCAGTA CTATTTTATG 001040
001041 CTTAGTGGTT AAACTAATTC CATAAATCTT TTGCAACTAT CCTCTATTCT TTTTCTTGTA ATTTTTACCT GGGAAGGTTT 001120
001121 TTACTGATAA TCATCCTATC CTGAGTCATC CCACAAACCA ATCTGTCTCA CTAATCATTG CTTCTAACCT ACAGACTAAG 001200
001201 CATAACTTCT GCTAAATGAT CTTTGATAAG ATGCTATGAC TCTATAAAGT CTTTGATATT CATGTCTAAA TTTAATCACT 001280
001281 TGTAGATTTT CATAGAATCA ATCTTTCACT TCTACAATTG GGAGTATTTA TAAGTTGTTT ATCTTAAACA GTTCCTCTAT 001360
001361 CACGCTTTTC ACGTTAAATA AAGCAA
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Predicted Small Protein

Name NONHSAT092495_smProtein_110:226
Length 39
Molecular weight 4142.7247
Aromaticity 0.0
Instability index 70.5973684211
Isoelectric point 9.77606201172
Runs 5
Runs residual 0.0410318559557
Runs probability 0.00692457163044
Amino acid sequence MGSLRRKLVHGTAPVKSPELEAPDSSERKGAIQHLSCR
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLEEEELL
PRMN -
PiMo -