Difference between revisions of "NONHSAT092495"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>agaagccaaaaaggcccaagtccacaagacagaaagaataggtgaaaagtccatgtcatctcatttttggagatggacatggacaggggctgaaactgcagtaccagcagatggggagcttaagaaggaagctagttcatggcacagcacccgtaaagtccccagaattggaggcaccagattcttctgaaagaaaagGAGCAATTCAGCACTTGTCATGCAGATAAGAGGTCAACACCCCAGGACGGAGTGAAAACCTAAGATGGACTCAACGACTCTCTTACCGTCCAGCTCTCAAGTCCCTTCTCTTGTGAAAATGGAAAAGTTGAACTACAGTTGAGATATTATTCCCAGGTGTTCTTTGGAACACAGGGGATTTCTCCAAAAGGCACAGAACAAATTGCCTCCAAACAGCCAAGATTCCAGCAGAAGCTGGAGTAGCAGACTACTTGGATCTTCAAAGTACCTGGCCCTGAGTCAGTTAAGGAAGATCTTTTCTTCTCTTTTGTACAATCCTATGATGAGAGCTGCAAAGTGAACTGACTAAGAGCTTCTGCCTTGATCATTGACCTCCCAATCCTAATAATATGTTCACTGGCCAAACTTCCTAATCGATTTGTCTTTTGGATATAACGTTCCTCCTACTGTTTGCCTGATTGAGAAATCTGCTACAGAACATGACCGGTTAGCATTCCCACCAACCCCAGTGCTACACTGACTGTCTTTCGATGGACTTTGCTCCTTGCTGCCTCTCTGAGGTCCCAGACCTTCAGAGTGACCTTCACAGCTCTGCCTAACTTTCTGTCATACTTCTATCAAGAGAGACAGCTAAATCAATATTTTTAATGTGCTTTGCTGTCGGAATTCGATGATCTGTCACAGTTCTTGCCCAATACACCCCATCATTATTGTTAAAATGTTTTTAGCTTTGTTTGTAGAATTGCTTTAACTGGTTTCATCTCTGGGAGCTACACTTTGAAATATAACTTTAGCAACATTTTACTATACTTTTTCACAACCCAGAGCAGTACTATTTTATGCTTAGTGGTTAAACTAATTCCATAAATCTTTTGCAACTATCCTCTATTCTTTTTCTTGTAATTTTTACCTGGGAAGGTTTTTACTGATAATCATCCTATCCTGAGTCATCCCACAAACCAATCTGTCTCACTAATCATTGCTTCTAACCTACAGACTAAGCATAACTTCTGCTAAATGATCTTTGATAAGATGCTATGACTCTATAAAGTCTTTGATATTCATGTCTAAATTTAATCACTTGTAGATTTTCATAGAATCAATCTTTCACTTCTACAATTGGGAGTATTTATAAGTTGTTTATCTTAAACAGTTCCTCTATCACGCTTTTCACGTTAAATAAAGCAA</dnaseq>| | sequence = <dnaseq>agaagccaaaaaggcccaagtccacaagacagaaagaataggtgaaaagtccatgtcatctcatttttggagatggacatggacaggggctgaaactgcagtaccagcagatggggagcttaagaaggaagctagttcatggcacagcacccgtaaagtccccagaattggaggcaccagattcttctgaaagaaaagGAGCAATTCAGCACTTGTCATGCAGATAAGAGGTCAACACCCCAGGACGGAGTGAAAACCTAAGATGGACTCAACGACTCTCTTACCGTCCAGCTCTCAAGTCCCTTCTCTTGTGAAAATGGAAAAGTTGAACTACAGTTGAGATATTATTCCCAGGTGTTCTTTGGAACACAGGGGATTTCTCCAAAAGGCACAGAACAAATTGCCTCCAAACAGCCAAGATTCCAGCAGAAGCTGGAGTAGCAGACTACTTGGATCTTCAAAGTACCTGGCCCTGAGTCAGTTAAGGAAGATCTTTTCTTCTCTTTTGTACAATCCTATGATGAGAGCTGCAAAGTGAACTGACTAAGAGCTTCTGCCTTGATCATTGACCTCCCAATCCTAATAATATGTTCACTGGCCAAACTTCCTAATCGATTTGTCTTTTGGATATAACGTTCCTCCTACTGTTTGCCTGATTGAGAAATCTGCTACAGAACATGACCGGTTAGCATTCCCACCAACCCCAGTGCTACACTGACTGTCTTTCGATGGACTTTGCTCCTTGCTGCCTCTCTGAGGTCCCAGACCTTCAGAGTGACCTTCACAGCTCTGCCTAACTTTCTGTCATACTTCTATCAAGAGAGACAGCTAAATCAATATTTTTAATGTGCTTTGCTGTCGGAATTCGATGATCTGTCACAGTTCTTGCCCAATACACCCCATCATTATTGTTAAAATGTTTTTAGCTTTGTTTGTAGAATTGCTTTAACTGGTTTCATCTCTGGGAGCTACACTTTGAAATATAACTTTAGCAACATTTTACTATACTTTTTCACAACCCAGAGCAGTACTATTTTATGCTTAGTGGTTAAACTAATTCCATAAATCTTTTGCAACTATCCTCTATTCTTTTTCTTGTAATTTTTACCTGGGAAGGTTTTTACTGATAATCATCCTATCCTGAGTCATCCCACAAACCAATCTGTCTCACTAATCATTGCTTCTAACCTACAGACTAAGCATAACTTCTGCTAAATGATCTTTGATAAGATGCTATGACTCTATAAAGTCTTTGATATTCATGTCTAAATTTAATCACTTGTAGATTTTCATAGAATCAATCTTTCACTTCTACAATTGGGAGTATTTATAAGTTGTTTATCTTAAACAGTTCCTCTATCACGCTTTTCACGTTAAATAAAGCAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG036272]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:43, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT092495 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1386 nt |
| Genomic location |
chr3+:142645541..142661364 |
| Exon number |
3 |
| Exons |
142645541..142645738,142652047..142652110,142660241..142661364 |
| Genome context |
|
| Sequence |
000001 agaagccaaa aaggcccaag tccacaagac agaaagaata ggtgaaaagt ccatgtcatc tcatttttgg agatggacat 000080
000081 ggacaggggc tgaaactgca gtaccagcag atggggagct taagaaggaa gctagttcat ggcacagcac ccgtaaagtc 000160 000161 cccagaattg gaggcaccag attcttctga aagaaaagGA GCAATTCAGC ACTTGTCATG CAGATAAGAG GTCAACACCC 000240 000241 CAGGACGGAG TGAAAACCTA AGATGGACTC AACGACTCTC TTACCGTCCA GCTCTCAAGT CCCTTCTCTT GTGAAAATGG 000320 000321 AAAAGTTGAA CTACAGTTGA GATATTATTC CCAGGTGTTC TTTGGAACAC AGGGGATTTC TCCAAAAGGC ACAGAACAAA 000400 000401 TTGCCTCCAA ACAGCCAAGA TTCCAGCAGA AGCTGGAGTA GCAGACTACT TGGATCTTCA AAGTACCTGG CCCTGAGTCA 000480 000481 GTTAAGGAAG ATCTTTTCTT CTCTTTTGTA CAATCCTATG ATGAGAGCTG CAAAGTGAAC TGACTAAGAG CTTCTGCCTT 000560 000561 GATCATTGAC CTCCCAATCC TAATAATATG TTCACTGGCC AAACTTCCTA ATCGATTTGT CTTTTGGATA TAACGTTCCT 000640 000641 CCTACTGTTT GCCTGATTGA GAAATCTGCT ACAGAACATG ACCGGTTAGC ATTCCCACCA ACCCCAGTGC TACACTGACT 000720 000721 GTCTTTCGAT GGACTTTGCT CCTTGCTGCC TCTCTGAGGT CCCAGACCTT CAGAGTGACC TTCACAGCTC TGCCTAACTT 000800 000801 TCTGTCATAC TTCTATCAAG AGAGACAGCT AAATCAATAT TTTTAATGTG CTTTGCTGTC GGAATTCGAT GATCTGTCAC 000880 000881 AGTTCTTGCC CAATACACCC CATCATTATT GTTAAAATGT TTTTAGCTTT GTTTGTAGAA TTGCTTTAAC TGGTTTCATC 000960 000961 TCTGGGAGCT ACACTTTGAA ATATAACTTT AGCAACATTT TACTATACTT TTTCACAACC CAGAGCAGTA CTATTTTATG 001040 001041 CTTAGTGGTT AAACTAATTC CATAAATCTT TTGCAACTAT CCTCTATTCT TTTTCTTGTA ATTTTTACCT GGGAAGGTTT 001120 001121 TTACTGATAA TCATCCTATC CTGAGTCATC CCACAAACCA ATCTGTCTCA CTAATCATTG CTTCTAACCT ACAGACTAAG 001200 001201 CATAACTTCT GCTAAATGAT CTTTGATAAG ATGCTATGAC TCTATAAAGT CTTTGATATT CATGTCTAAA TTTAATCACT 001280 001281 TGTAGATTTT CATAGAATCA ATCTTTCACT TCTACAATTG GGAGTATTTA TAAGTTGTTT ATCTTAAACA GTTCCTCTAT 001360 001361 CACGCTTTTC ACGTTAAATA AAGCAA |
Predicted Small Protein
| Name | NONHSAT092495_smProtein_110:226 |
| Length | 39 |
| Molecular weight | 4142.7247 |
| Aromaticity | 0.0 |
| Instability index | 70.5973684211 |
| Isoelectric point | 9.77606201172 |
| Runs | 5 |
| Runs residual | 0.0410318559557 |
| Runs probability | 0.00692457163044 |
| Amino acid sequence | MGSLRRKLVHGTAPVKSPELEAPDSSERKGAIQHLSCR |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLEEEELL |
| PRMN | - |
| PiMo | - |
