Difference between revisions of "NONHSAT092942"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>cacggtggctcatgcctataatcccaacaatttgggaggcagagacaggaggattgcttgagtccagaagttcgagaccagcctggccaacatagtgagaccctgtctctaTTCACATATTTAAAAATTAAAAGAAGTTTGGCAGCGTGTTCAGGAAGGACAGGACCTACTTCGATCATCTTACGACCATGAGACAGGATGGAGAAGGGAAGAAGCTTACACTTGGCAATCTTCTAGGGAGGACTTTGGCTGAACCCAGTGAACCAGGAGGAAAAGAATCACAAACATCTGGAGTTTGTTGACTAGAAAAATTCCTTGTGGTCTGACAGATTACCATTTCCTACCCAGCCATTCTCATCAGAGAAACCAGTCCCATTTTCAACTGGCGCGGCTAGTTGAAAGTTCCACATGTTTCCCCAGaaaatggcatagccagaaggccctcaccagattccagcaccagcctccagaacatgagccaaataaatcatcgtttataaattacccagtctcaggtattctgttttagcaacacaaaacagacaaaaa</dnaseq>| | sequence = <dnaseq>cacggtggctcatgcctataatcccaacaatttgggaggcagagacaggaggattgcttgagtccagaagttcgagaccagcctggccaacatagtgagaccctgtctctaTTCACATATTTAAAAATTAAAAGAAGTTTGGCAGCGTGTTCAGGAAGGACAGGACCTACTTCGATCATCTTACGACCATGAGACAGGATGGAGAAGGGAAGAAGCTTACACTTGGCAATCTTCTAGGGAGGACTTTGGCTGAACCCAGTGAACCAGGAGGAAAAGAATCACAAACATCTGGAGTTTGTTGACTAGAAAAATTCCTTGTGGTCTGACAGATTACCATTTCCTACCCAGCCATTCTCATCAGAGAAACCAGTCCCATTTTCAACTGGCGCGGCTAGTTGAAAGTTCCACATGTTTCCCCAGaaaatggcatagccagaaggccctcaccagattccagcaccagcctccagaacatgagccaaataaatcatcgtttataaattacccagtctcaggtattctgttttagcaacacaaaacagacaaaaa</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG036510]][[Category:Transcripts]] |
Latest revision as of 00:45, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT092942 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
549 nt |
| Genomic location |
chr3+:158477958..158488923 |
| Exon number |
3 |
| Exons |
158477958..158478172,158487067..158487271,158488795..158488923 |
| Genome context |
|
| Sequence |
000001 cacggtggct catgcctata atcccaacaa tttgggaggc agagacagga ggattgcttg agtccagaag ttcgagacca 000080
000081 gcctggccaa catagtgaga ccctgtctct aTTCACATAT TTAAAAATTA AAAGAAGTTT GGCAGCGTGT TCAGGAAGGA 000160 000161 CAGGACCTAC TTCGATCATC TTACGACCAT GAGACAGGAT GGAGAAGGGA AGAAGCTTAC ACTTGGCAAT CTTCTAGGGA 000240 000241 GGACTTTGGC TGAACCCAGT GAACCAGGAG GAAAAGAATC ACAAACATCT GGAGTTTGTT GACTAGAAAA ATTCCTTGTG 000320 000321 GTCTGACAGA TTACCATTTC CTACCCAGCC ATTCTCATCA GAGAAACCAG TCCCATTTTC AACTGGCGCG GCTAGTTGAA 000400 000401 AGTTCCACAT GTTTCCCCAG aaaatggcat agccagaagg ccctcaccag attccagcac cagcctccag aacatgagcc 000480 000481 aaataaatca tcgtttataa attacccagt ctcaggtatt ctgttttagc aacacaaaac agacaaaaa |
Predicted Small Protein
| Name | NONHSAT092942_smProtein_188:301 |
| Length | 38 |
| Molecular weight | 3845.2769 |
| Aromaticity | 0.0 |
| Instability index | 41.4540540541 |
| Isoelectric point | 6.06890869141 |
| Runs | 5 |
| Runs residual | 0.0446317877511 |
| Runs probability | 0.0165871754107 |
| Amino acid sequence | MRQDGEGKKLTLGNLLGRTLAEPSEPGGKESQTSGVC |
| Secondary structure | LLLLLLLLEEEELLHHHLLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
