Difference between revisions of "NONHSAT093762"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GCGTAACTTCCTGTGCGCCACGTCCGGCCGGAATTCCACCGGACCCGCAGTCCCGCTGAGCGCCCGACTCGGCTAGTGACGTCACTTCCGACCTGTCTTTGAGTTCACCTGGCATCCTGATGCGCTCCAGATCTTGCTTGTCGGATTTTATTTCGCCGGTTTGCTTCTCCGCCTGTGTATCTAGCCTGGAAAAGTGCATGTTATCTTTTTGCAAACTTCTTTAGCCTTCTTTTCGGCAGCCACTTCCCTCTGCTCCTTCTGTAGCTTGGACTCATCACTGGTCAAATTCACCTGGCCTCTTGGAGAAATCATGATTGTTACTATGATTTTTCTTATTTATCTACCtagtggagtgctaagagtgcaggcagtgaggttgtgctatctggtttcaagtgctgcctctcacttctaacagtgttacctgggcatgatacttaacctctctgtgcccacttcaagtgtgaaacataatactagtacctagaaaataggacgattgtattacttgagataatacgtggaaagcactggcatattgaaagcattcgatgagtgttaaccattactTTTTGCACTACTATGCACTCTTATTCCCTGTTGGAACATACCTGTGCTTAAGGACAACTGGAACCAGATTTCCTGCTACCCTTTATGTCCCCCCTACTTTTTTTTATGTTTATGGATACTCGGCTTTTAATTAATTGATGATGCCTGGCACCCTCTTCGGAACTGTGAGCCCCTCCAGACAAAGTTGGAATCTTATATAGAAAACAACTTTAACCCTGCTGGAAATAACCTGCTTAGTTATtgtgctagttaatgggggaaagttgaataaaacccaggccctaccctcaagaaCGTGGAGATACTCAATAAATGATAGTGGGAGGAAGGAAGTCAACCCAGGAAAAAGCAGAAGGGACCAGCTGAGCTGAAGATTTATCTTTGCCCAAAAATTtcgcagaatgacagaactgaaaggaacttttagaggcaatcacttagtcaacctcttgctgttacaggtaaggaaaattggatccaaagaagcgtctaaatgtcacacaatgagtttcaatgctagcaccaaaagtagagtctcAAAATGCTTGCCACCTCTCCCATTCCCAAAATCTGCCTCAAAATGTTAATAAGGTAAGGGTAGATTCACTTTTAAATCCTTCCCTCTCAAGTGAAAAGGATTAGGAAAATCCCAGTCCTGGAGAGACAAGGGCAATGTA</dnaseq>| | sequence = <dnaseq>GCGTAACTTCCTGTGCGCCACGTCCGGCCGGAATTCCACCGGACCCGCAGTCCCGCTGAGCGCCCGACTCGGCTAGTGACGTCACTTCCGACCTGTCTTTGAGTTCACCTGGCATCCTGATGCGCTCCAGATCTTGCTTGTCGGATTTTATTTCGCCGGTTTGCTTCTCCGCCTGTGTATCTAGCCTGGAAAAGTGCATGTTATCTTTTTGCAAACTTCTTTAGCCTTCTTTTCGGCAGCCACTTCCCTCTGCTCCTTCTGTAGCTTGGACTCATCACTGGTCAAATTCACCTGGCCTCTTGGAGAAATCATGATTGTTACTATGATTTTTCTTATTTATCTACCtagtggagtgctaagagtgcaggcagtgaggttgtgctatctggtttcaagtgctgcctctcacttctaacagtgttacctgggcatgatacttaacctctctgtgcccacttcaagtgtgaaacataatactagtacctagaaaataggacgattgtattacttgagataatacgtggaaagcactggcatattgaaagcattcgatgagtgttaaccattactTTTTGCACTACTATGCACTCTTATTCCCTGTTGGAACATACCTGTGCTTAAGGACAACTGGAACCAGATTTCCTGCTACCCTTTATGTCCCCCCTACTTTTTTTTATGTTTATGGATACTCGGCTTTTAATTAATTGATGATGCCTGGCACCCTCTTCGGAACTGTGAGCCCCTCCAGACAAAGTTGGAATCTTATATAGAAAACAACTTTAACCCTGCTGGAAATAACCTGCTTAGTTATtgtgctagttaatgggggaaagttgaataaaacccaggccctaccctcaagaaCGTGGAGATACTCAATAAATGATAGTGGGAGGAAGGAAGTCAACCCAGGAAAAAGCAGAAGGGACCAGCTGAGCTGAAGATTTATCTTTGCCCAAAAATTtcgcagaatgacagaactgaaaggaacttttagaggcaatcacttagtcaacctcttgctgttacaggtaaggaaaattggatccaaagaagcgtctaaatgtcacacaatgagtttcaatgctagcaccaaaagtagagtctcAAAATGCTTGCCACCTCTCCCATTCCCAAAATCTGCCTCAAAATGTTAATAAGGTAAGGGTAGATTCACTTTTAAATCCTTCCCTCTCAAGTGAAAAGGATTAGGAAAATCCCAGTCCTGGAGAGACAAGGGCAATGTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG036879]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:48, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT093762 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1247 nt |
| Genomic location |
chr3-:184999482..185000728 |
| Exon number |
1 |
| Exons |
184999482..185000728 |
| Genome context |
|
| Sequence |
000001 GCGTAACTTC CTGTGCGCCA CGTCCGGCCG GAATTCCACC GGACCCGCAG TCCCGCTGAG CGCCCGACTC GGCTAGTGAC 000080
000081 GTCACTTCCG ACCTGTCTTT GAGTTCACCT GGCATCCTGA TGCGCTCCAG ATCTTGCTTG TCGGATTTTA TTTCGCCGGT 000160 000161 TTGCTTCTCC GCCTGTGTAT CTAGCCTGGA AAAGTGCATG TTATCTTTTT GCAAACTTCT TTAGCCTTCT TTTCGGCAGC 000240 000241 CACTTCCCTC TGCTCCTTCT GTAGCTTGGA CTCATCACTG GTCAAATTCA CCTGGCCTCT TGGAGAAATC ATGATTGTTA 000320 000321 CTATGATTTT TCTTATTTAT CTACCtagtg gagtgctaag agtgcaggca gtgaggttgt gctatctggt ttcaagtgct 000400 000401 gcctctcact tctaacagtg ttacctgggc atgatactta acctctctgt gcccacttca agtgtgaaac ataatactag 000480 000481 tacctagaaa ataggacgat tgtattactt gagataatac gtggaaagca ctggcatatt gaaagcattc gatgagtgtt 000560 000561 aaccattact TTTTGCACTA CTATGCACTC TTATTCCCTG TTGGAACATA CCTGTGCTTA AGGACAACTG GAACCAGATT 000640 000641 TCCTGCTACC CTTTATGTCC CCCCTACTTT TTTTTATGTT TATGGATACT CGGCTTTTAA TTAATTGATG ATGCCTGGCA 000720 000721 CCCTCTTCGG AACTGTGAGC CCCTCCAGAC AAAGTTGGAA TCTTATATAG AAAACAACTT TAACCCTGCT GGAAATAACC 000800 000801 TGCTTAGTTA Ttgtgctagt taatggggga aagttgaata aaacccaggc cctaccctca agaaCGTGGA GATACTCAAT 000880 000881 AAATGATAGT GGGAGGAAGG AAGTCAACCC AGGAAAAAGC AGAAGGGACC AGCTGAGCTG AAGATTTATC TTTGCCCAAA 000960 000961 AATTtcgcag aatgacagaa ctgaaaggaa cttttagagg caatcactta gtcaacctct tgctgttaca ggtaaggaaa 001040 001041 attggatcca aagaagcgtc taaatgtcac acaatgagtt tcaatgctag caccaaaagt agagtctcAA AATGCTTGCC 001120 001121 ACCTCTCCCA TTCCCAAAAT CTGCCTCAAA ATGTTAATAA GGTAAGGGTA GATTCACTTT TAAATCCTTC CCTCTCAAGT 001200 001201 GAAAAGGATT AGGAAAATCC CAGTCCTGGA GAGACAAGGG CAATGTA |
Predicted Small Protein
| Name | NONHSAT093762_smProtein_971:1156 |
| Length | 62 |
| Molecular weight | 6717.9303 |
| Aromaticity | 0.0491803278689 |
| Instability index | 43.7147540984 |
| Isoelectric point | 10.2473754883 |
| Runs | 7 |
| Runs residual | 0.0380629357452 |
| Runs probability | 0.0378782143489 |
| Amino acid sequence | MTELKGTFRGNHLVNLLLLQVRKIGSKEASKCHTMSFNASTKSRVSKCLPPLPFPKSASK C |
| Secondary structure | LLLLLEEELLHHHHHHHHHHHHHHLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLL L |
| PRMN | - |
| PiMo | - |
