Difference between revisions of "NONHSAT096463"
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sequence = <dnaseq>tttaagagacgggatctcgctgtactgctcaggctagccttgaactcctggcctcaagtgatccttctgccttagcctcctgagtggctggCTCCACTCTGcttggctctgatatttttccataaagcctatcattcatttatcatggaggtatgttaattttgccttcttaatttctctcaaattcacctgctctttgcctacagtcatctgccccgatctggggcaacgcagtttcttcccagggctgttgccatagcatcgcagtggatcacccttccttcagtcttgttcccctctggttctttctctccactagactttaaaaaatttttgagatagggtcttgctctgttgcccaggatggagaacaatcatagctcactgcagccacgacctcctgggctcaaatgatcctcccacctcagcctcccgagtagctgggaccacttgtgcttgctaggatgcctggctaatttttaatttttttgtagagacaaggtctcactgtgttgcctaggctagtctcaaactgccaggctcaagcaatcctcttgcttcagcctcccaaagtgttgggattacaggcatgagccactgcacctggcctagcggatttctgaagcattaatctgttctgttactttccagctaaaaaccaacaagtgtctGAGGACACAGTTTAAACTCCAAGATGATAGGGTCCTCCCTCACCTGGACTCCCACCTACCCTCATGACCTCCTTTTGTGAAATGCTGAAGGGCTCTGCAGCTGGTTGTCTGGTACTGCTGGCCTTTGCTTTCTATTTAGCATGTTCCTTCTCCCACAAAACAAAATCACATTCTCACTATGCCCTGTTCATTCTTCAGGACTATCTTCTGGGAAACTTTTACTACATACCCCTCTCCCCCTAATCTGAGTGTCTGCTTTGCTCAGGTAACATGTGTTCACTGGATAAATCCTTGATTCCTGGCACTGAGGCAGGGTTTCTGTTCCCAGGAAGCAGAGGCATACTATTCTGTGAAGGATTGACTGAGTTTCTCCTAATACCAAGCAGTATCTGAGGGAACAGATGTCTAGCTTAAAATCCTCCCTAGCACTTGTCATAGCAGTGCTACGTATTGCCTGTGAAGGAAGTTTAATAACTGCTGAAAGGTTCGATTAGCTTTATTTCATCAGGATTTGTTTGACTTTACAAATTGATTTGGGTTATTTCAACTTTTAGGTCTAGTCTTAAGTATAACTGGTACATATTCCTTCAAGCAGCCATTACACCTCTCATAAATTTATTATACACCTGCATTTTTATAACTATTATGCTTTTTAATTGTTGGCCACCATTTTTAGTGCTTCTGAATTGTTATGGTTCTCAAGCAGCAGTTGTCACCTTGGTTTTGAATTAATGCTGTGACGCTTGCTTCCAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGTGCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAACAAGCTGTTTGTTCATCTATATTTAGTTTAAAATAGGTAGTATTATCTTTCTGTACATAGTGTACATTACAACTAAAAGTGATGGAAAAATACTGTATTTTGTAGCACTGATTTTGTGAGTTTGACCCATTATTATGTCTGAGATATAATCATTGATTCTATTTGTAACAAGGAGTTTT</dnaseq>| | sequence = <dnaseq>tttaagagacgggatctcgctgtactgctcaggctagccttgaactcctggcctcaagtgatccttctgccttagcctcctgagtggctggCTCCACTCTGcttggctctgatatttttccataaagcctatcattcatttatcatggaggtatgttaattttgccttcttaatttctctcaaattcacctgctctttgcctacagtcatctgccccgatctggggcaacgcagtttcttcccagggctgttgccatagcatcgcagtggatcacccttccttcagtcttgttcccctctggttctttctctccactagactttaaaaaatttttgagatagggtcttgctctgttgcccaggatggagaacaatcatagctcactgcagccacgacctcctgggctcaaatgatcctcccacctcagcctcccgagtagctgggaccacttgtgcttgctaggatgcctggctaatttttaatttttttgtagagacaaggtctcactgtgttgcctaggctagtctcaaactgccaggctcaagcaatcctcttgcttcagcctcccaaagtgttgggattacaggcatgagccactgcacctggcctagcggatttctgaagcattaatctgttctgttactttccagctaaaaaccaacaagtgtctGAGGACACAGTTTAAACTCCAAGATGATAGGGTCCTCCCTCACCTGGACTCCCACCTACCCTCATGACCTCCTTTTGTGAAATGCTGAAGGGCTCTGCAGCTGGTTGTCTGGTACTGCTGGCCTTTGCTTTCTATTTAGCATGTTCCTTCTCCCACAAAACAAAATCACATTCTCACTATGCCCTGTTCATTCTTCAGGACTATCTTCTGGGAAACTTTTACTACATACCCCTCTCCCCCTAATCTGAGTGTCTGCTTTGCTCAGGTAACATGTGTTCACTGGATAAATCCTTGATTCCTGGCACTGAGGCAGGGTTTCTGTTCCCAGGAAGCAGAGGCATACTATTCTGTGAAGGATTGACTGAGTTTCTCCTAATACCAAGCAGTATCTGAGGGAACAGATGTCTAGCTTAAAATCCTCCCTAGCACTTGTCATAGCAGTGCTACGTATTGCCTGTGAAGGAAGTTTAATAACTGCTGAAAGGTTCGATTAGCTTTATTTCATCAGGATTTGTTTGACTTTACAAATTGATTTGGGTTATTTCAACTTTTAGGTCTAGTCTTAAGTATAACTGGTACATATTCCTTCAAGCAGCCATTACACCTCTCATAAATTTATTATACACCTGCATTTTTATAACTATTATGCTTTTTAATTGTTGGCCACCATTTTTAGTGCTTCTGAATTGTTATGGTTCTCAAGCAGCAGTTGTCACCTTGGTTTTGAATTAATGCTGTGACGCTTGCTTCCAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGTGCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGAGGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAACAAGCTGTTTGTTCATCTATATTTAGTTTAAAATAGGTAGTATTATCTTTCTGTACATAGTGTACATTACAACTAAAAGTGATGGAAAAATACTGTATTTTGTAGCACTGATTTTGTGAGTTTGACCCATTATTATGTCTGAGATATAATCATTGATTCTATTTGTAACAAGGAGTTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG037978]] | + | [[Category:Sense]][[Category:NONHSAG037978]][[Category:Transcripts]] |
Latest revision as of 00:58, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096463 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1786 nt |
Genomic location |
chr4+:56289281..56291798 |
Exon number |
2 |
Exons |
56289281..56290810,56291543..56291798 |
Genome context |
|
Sequence |
000001 tttaagagac gggatctcgc tgtactgctc aggctagcct tgaactcctg gcctcaagtg atccttctgc cttagcctcc 000080
000081 tgagtggctg gCTCCACTCT Gcttggctct gatatttttc cataaagcct atcattcatt tatcatggag gtatgttaat 000160 000161 tttgccttct taatttctct caaattcacc tgctctttgc ctacagtcat ctgccccgat ctggggcaac gcagtttctt 000240 000241 cccagggctg ttgccatagc atcgcagtgg atcacccttc cttcagtctt gttcccctct ggttctttct ctccactaga 000320 000321 ctttaaaaaa tttttgagat agggtcttgc tctgttgccc aggatggaga acaatcatag ctcactgcag ccacgacctc 000400 000401 ctgggctcaa atgatcctcc cacctcagcc tcccgagtag ctgggaccac ttgtgcttgc taggatgcct ggctaatttt 000480 000481 taattttttt gtagagacaa ggtctcactg tgttgcctag gctagtctca aactgccagg ctcaagcaat cctcttgctt 000560 000561 cagcctccca aagtgttggg attacaggca tgagccactg cacctggcct agcggatttc tgaagcatta atctgttctg 000640 000641 ttactttcca gctaaaaacc aacaagtgtc tGAGGACACA GTTTAAACTC CAAGATGATA GGGTCCTCCC TCACCTGGAC 000720 000721 TCCCACCTAC CCTCATGACC TCCTTTTGTG AAATGCTGAA GGGCTCTGCA GCTGGTTGTC TGGTACTGCT GGCCTTTGCT 000800 000801 TTCTATTTAG CATGTTCCTT CTCCCACAAA ACAAAATCAC ATTCTCACTA TGCCCTGTTC ATTCTTCAGG ACTATCTTCT 000880 000881 GGGAAACTTT TACTACATAC CCCTCTCCCC CTAATCTGAG TGTCTGCTTT GCTCAGGTAA CATGTGTTCA CTGGATAAAT 000960 000961 CCTTGATTCC TGGCACTGAG GCAGGGTTTC TGTTCCCAGG AAGCAGAGGC ATACTATTCT GTGAAGGATT GACTGAGTTT 001040 001041 CTCCTAATAC CAAGCAGTAT CTGAGGGAAC AGATGTCTAG CTTAAAATCC TCCCTAGCAC TTGTCATAGC AGTGCTACGT 001120 001121 ATTGCCTGTG AAGGAAGTTT AATAACTGCT GAAAGGTTCG ATTAGCTTTA TTTCATCAGG ATTTGTTTGA CTTTACAAAT 001200 001201 TGATTTGGGT TATTTCAACT TTTAGGTCTA GTCTTAAGTA TAACTGGTAC ATATTCCTTC AAGCAGCCAT TACACCTCTC 001280 001281 ATAAATTTAT TATACACCTG CATTTTTATA ACTATTATGC TTTTTAATTG TTGGCCACCA TTTTTAGTGC TTCTGAATTG 001360 001361 TTATGGTTCT CAAGCAGCAG TTGTCACCTT GGTTTTGAAT TAATGCTGTG ACGCTTGCTT CCAGGACCCC TATGGTGTAG 001440 001441 CCGTGGGTGG AACTGTGGGG CACTGCCTGT GCACGGGATT GGCAGTAATT GGAGGAAGAA TGATAGCACA GAAAATCTCT 001520 001521 GTCAGAACTG TGACAATCAT AGGAGGCATC GTTTTTTTGG CGTTTGCATT TTCTGCACTA TTTATAAGCC CTGATTCTGG 001600 001601 TTTTTAACAA GCTGTTTGTT CATCTATATT TAGTTTAAAA TAGGTAGTAT TATCTTTCTG TACATAGTGT ACATTACAAC 001680 001681 TAAAAGTGAT GGAAAAATAC TGTATTTTGT AGCACTGATT TTGTGAGTTT GACCCATTAT TATGTCTGAG ATATAATCAT 001760 001761 TGATTCTATT TGTAACAAGG AGTTTT |
Predicted Small Protein
Name | NONHSAT096463_smProtein_734:913 |
Length | 60 |
Molecular weight | 6631.7356 |
Aromaticity | 0.186440677966 |
Instability index | 60.8206779661 |
Isoelectric point | 7.74700927734 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0247937012643 |
Amino acid sequence | MTSFCEMLKGSAAGCLVLLAFAFYLACSFSHKTKSHSHYALFILQDYLLGNFYYIPLSP |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHLLEEEELLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiTTTTTTTTTTTTTTTTTToooo |