Difference between revisions of "NONHSAT099859"
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sequence = <dnaseq>GGGAAACCGAGTCACAAAGAGTCCAAGTCGACAGGAAAGTGGATGTCTTGGCCCCAGAGTGTCTGCGGCCCAGAAGATGCCCGTCTCTTAGCCTCCCGCTTGCCCCGAAAGGCTGGATGTGGGCACCACTTGGCGGGCAGACGGGTGGGCGGGTGCTCCAGGCAACTTAGACATCTTCTCAGGAGGGAGTGGGGAACCGGGGCCAAGCGCCGTCTCTTCGGTGGGATTCTCTCCCTGTGGCTGTGACTTGCTTTGACAAGTGGAGTGGAAATTTTTCGGTTACTCGTCGGTGGAATAAAGTGTCTAAAGCCACTTGGGGTAAGGCTGAAATAATCTTGTTGCGCTATTTCAGACGGATGTAATGCACCAGAACATTTATGACTACATCCACGTGGACGACCGCCAGGACTTCTGCCGGCAGCTCCACTGGGCCATGGACCCTCCCCAGGTGGTGTTTGGGCAGCCCCCGCCCTTGGAGACAGGAGATGATGCTATCCTGGGGAGGCTGCTCAGGGCCCAGGAGTGGGGCACAGGCACGCCCACCGAGTACTCGGCCTTCCTGACCCGCT</dnaseq>| | sequence = <dnaseq>GGGAAACCGAGTCACAAAGAGTCCAAGTCGACAGGAAAGTGGATGTCTTGGCCCCAGAGTGTCTGCGGCCCAGAAGATGCCCGTCTCTTAGCCTCCCGCTTGCCCCGAAAGGCTGGATGTGGGCACCACTTGGCGGGCAGACGGGTGGGCGGGTGCTCCAGGCAACTTAGACATCTTCTCAGGAGGGAGTGGGGAACCGGGGCCAAGCGCCGTCTCTTCGGTGGGATTCTCTCCCTGTGGCTGTGACTTGCTTTGACAAGTGGAGTGGAAATTTTTCGGTTACTCGTCGGTGGAATAAAGTGTCTAAAGCCACTTGGGGTAAGGCTGAAATAATCTTGTTGCGCTATTTCAGACGGATGTAATGCACCAGAACATTTATGACTACATCCACGTGGACGACCGCCAGGACTTCTGCCGGCAGCTCCACTGGGCCATGGACCCTCCCCAGGTGGTGTTTGGGCAGCCCCCGCCCTTGGAGACAGGAGATGATGCTATCCTGGGGAGGCTGCTCAGGGCCCAGGAGTGGGGCACAGGCACGCCCACCGAGTACTCGGCCTTCCTGACCCGCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG039626]] | + | [[Category:Sense]][[Category:NONHSAG039626]][[Category:Transcripts]] |
Latest revision as of 01:12, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT099859 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
569 nt |
| Genomic location |
chr5+:422492..424042 |
| Exon number |
2 |
| Exons |
422492..422973,423956..424042 |
| Genome context |
|
| Sequence |
000001 GGGAAACCGA GTCACAAAGA GTCCAAGTCG ACAGGAAAGT GGATGTCTTG GCCCCAGAGT GTCTGCGGCC CAGAAGATGC 000080
000081 CCGTCTCTTA GCCTCCCGCT TGCCCCGAAA GGCTGGATGT GGGCACCACT TGGCGGGCAG ACGGGTGGGC GGGTGCTCCA 000160 000161 GGCAACTTAG ACATCTTCTC AGGAGGGAGT GGGGAACCGG GGCCAAGCGC CGTCTCTTCG GTGGGATTCT CTCCCTGTGG 000240 000241 CTGTGACTTG CTTTGACAAG TGGAGTGGAA ATTTTTCGGT TACTCGTCGG TGGAATAAAG TGTCTAAAGC CACTTGGGGT 000320 000321 AAGGCTGAAA TAATCTTGTT GCGCTATTTC AGACGGATGT AATGCACCAG AACATTTATG ACTACATCCA CGTGGACGAC 000400 000401 CGCCAGGACT TCTGCCGGCA GCTCCACTGG GCCATGGACC CTCCCCAGGT GGTGTTTGGG CAGCCCCCGC CCTTGGAGAC 000480 000481 AGGAGATGAT GCTATCCTGG GGAGGCTGCT CAGGGCCCAG GAGTGGGGCA CAGGCACGCC CACCGAGTAC TCGGCCTTCC 000560 000561 TGACCCGCT |
Predicted Small Protein
| Name | NONHSAT099859_smProtein_377:562 |
| Length | 62 |
| Molecular weight | 6608.3841 |
| Aromaticity | 0.0819672131148 |
| Instability index | 52.9147540984 |
| Isoelectric point | 11.875793457 |
| Runs | 8 |
| Runs residual | 0.0216694931223 |
| Runs probability | 0.0300189895779 |
| Amino acid sequence | MTTSTWTTARTSAGSSTGPWTLPRWCLGSPRPWRQEMMLSWGGCSGPRSGAQARPPSTRP S |
| Secondary structure | LLLLLEEELLLLLLLLLLLLLLLLEELLLLLLHHHEEEEEELLLLLLLLLLLLLLLLLLL L |
| PRMN | - |
| PiMo | - |
