Difference between revisions of "NONHSAT101112"
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sequence = <dnaseq>ATTTTGCAATTTCTCATGCCAATAAAAAAGAATGCTTCAATTTTACAAGAAGTATTCAGGTTTTGATAATCATTTTTTTTAAAAAAAAACCCAAACTCAGAATGTCTAAGTGTGTGACAGGAATATTTAATATTTTATATTCTCAAGTCATCACCCCAAGTATGCCATCTAATCCATATCTGTAGGGAAATCTATTTTTAAAGTAAGTGATACCTTGGAGGAAAAATAGATACATCATGATTACAGTTTTCATCACACCATAATCTTTTATTTTAGAATTAAGGAGAAGTATCCTCAAACATTTGATGACATATGCCTTTACTCTGAGGTTTCCCATTTGCTGTCACACTGCACATTCAGACTTCCGTGTCGGAGGTTCATACAAGAATTATTTCAAGATGTACAGTTTCTACAAATGCATGAAGAAGCAGAGGCTGTGTTGGCAACACCACCAAAGCAACCTATAGTTGATACATCTGCTGAATCCTGACCTCATATTTATGATGGATATAGATACATACTATATATATTCATATTTGTGGATTTCCTAAAAGCCTCAGAAAATACGAC</dnaseq>| | sequence = <dnaseq>ATTTTGCAATTTCTCATGCCAATAAAAAAGAATGCTTCAATTTTACAAGAAGTATTCAGGTTTTGATAATCATTTTTTTTAAAAAAAAACCCAAACTCAGAATGTCTAAGTGTGTGACAGGAATATTTAATATTTTATATTCTCAAGTCATCACCCCAAGTATGCCATCTAATCCATATCTGTAGGGAAATCTATTTTTAAAGTAAGTGATACCTTGGAGGAAAAATAGATACATCATGATTACAGTTTTCATCACACCATAATCTTTTATTTTAGAATTAAGGAGAAGTATCCTCAAACATTTGATGACATATGCCTTTACTCTGAGGTTTCCCATTTGCTGTCACACTGCACATTCAGACTTCCGTGTCGGAGGTTCATACAAGAATTATTTCAAGATGTACAGTTTCTACAAATGCATGAAGAAGCAGAGGCTGTGTTGGCAACACCACCAAAGCAACCTATAGTTGATACATCTGCTGAATCCTGACCTCATATTTATGATGGATATAGATACATACTATATATATTCATATTTGTGGATTTCCTAAAAGCCTCAGAAAATACGAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG040236]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG040236]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:17, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT101112 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
570 nt |
| Genomic location |
chr5-:38942326..38943349 |
| Exon number |
2 |
| Exons |
38942326..38942480,38942935..38943349 |
| Genome context |
|
| Sequence |
000001 ATTTTGCAAT TTCTCATGCC AATAAAAAAG AATGCTTCAA TTTTACAAGA AGTATTCAGG TTTTGATAAT CATTTTTTTT 000080
000081 AAAAAAAAAC CCAAACTCAG AATGTCTAAG TGTGTGACAG GAATATTTAA TATTTTATAT TCTCAAGTCA TCACCCCAAG 000160 000161 TATGCCATCT AATCCATATC TGTAGGGAAA TCTATTTTTA AAGTAAGTGA TACCTTGGAG GAAAAATAGA TACATCATGA 000240 000241 TTACAGTTTT CATCACACCA TAATCTTTTA TTTTAGAATT AAGGAGAAGT ATCCTCAAAC ATTTGATGAC ATATGCCTTT 000320 000321 ACTCTGAGGT TTCCCATTTG CTGTCACACT GCACATTCAG ACTTCCGTGT CGGAGGTTCA TACAAGAATT ATTTCAAGAT 000400 000401 GTACAGTTTC TACAAATGCA TGAAGAAGCA GAGGCTGTGT TGGCAACACC ACCAAAGCAA CCTATAGTTG ATACATCTGC 000480 000481 TGAATCCTGA CCTCATATTT ATGATGGATA TAGATACATA CTATATATAT TCATATTTGT GGATTTCCTA AAAGCCTCAG 000560 000561 AAAATACGAC |
Predicted Small Protein
| Name | NONHSAT101112_smProtein_305:466 |
| Length | 54 |
| Molecular weight | 6504.5317 |
| Aromaticity | 0.207547169811 |
| Instability index | 60.7379245283 |
| Isoelectric point | 9.59149169922 |
| Runs | 9 |
| Runs residual | 0.00954901058444 |
| Runs probability | 0.0141317788377 |
| Amino acid sequence | MTYAFTLRFPICCHTAHSDFRVGGSYKNYFKMYSFYKCMKKQRLCWQHHQSNL |
| Secondary structure | LEEEEEELLLEEEELLLLLLEELLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
