Difference between revisions of "NONHSAT102809"
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sequence = <dnaseq>CCCTCTGGAAGCAAAAAGAGAAACGACTCCAATCACCGTCTATATCTTATTGCATTGAGAGATAGCAGGTGTTTAGGCTGCAGCTATTGTCTGCCTTCCTCCCTGAGCTCACATAACAAGGATGAAAGAGTCTAAGGAACTTAGTTTCCCCAAACGCTCTTGCATAGGAGGGCGGGGAAACTTCGGAATCAAGGACTTAAAGAAATGCAATTGAGTCCCAACTCGCAAAGTGTGTCAGTCTCCATGTGGTTCCGTCCTTCCGCCGTCACTGTCTAGTCTCATCTAGTGTCGTTCTTCTGCTTTCTGTAGATCTCTAGGAACTCAGGATTCCCTGCCGCTTAGCCGTCGAGCTCCCGACCCCTCCGCATCCCTAGCCGGGAAGGACTGAGAGCTGAGCTCCAAGGTCGTGGTCTGGTCCTCAGGGATGAGGTCCCGGGTCCAGACTCTTTCCTTGGTCAGCAACTCCTGCTTAGAAGCTCCCCGCCCCGAATGGAATCGTGACCTGGCGCTAGGTCCCCCGCTGGGAGTGCCCGAGGCTTTCCTGAAGGCCCCAGGCCTTCAGGCCGCCAGGGTCCTAAGGTGCCTGTGGCGGCCCCTCGTCCGCCTGAGCCCTGAGATCAGCGCGGCCCTCGGTGCTGCAGGGCCCCAGGGCGGCCAGGAAACACCTGCCCGAAGTCCAGGCCCGGCCCCACTGCAGTCCAGGACCCTAATTCTCGAGTGTCTCTTCACGACCCTGACCCCGGAAGGGCGCTCCCTTGCGAACGAATTTTTAATTCTGCGGACTGGGATCCCTTGTAGGGGCCCCTCCGAGGGCCCCTCCCACCCCTTTCCCTGGACTAGCGAACTCCGACCCTAAGCGCGGCCCCGCAGGGAGCGGATCCCGGAAGCTAGGCCCATATCCGGCCGCGGAGCCTTGCGCGCGGGGTTGGCTGCCGGGAGGTCGACGCTAGTGCGGTcccccgcgcggcggaggggcccgggccgcggTATCTGCGCACTGAGACGTCGGCGGAAGGCTAGAGGCCGTGCTCTCGCCCCCGCAGAAGGCCACCACTCCTTGAGAAGGCCGGAGGGACAAAGCACCGGGCCTGCGCCGGGGGCATTCAAGAAGGAAGCCAGGCCCGACCGGGGGTGGCGCACGCTTCCCGAACCCCAGGCCCACGGCCCGGTTCCGCGCGGGCAGTTGGCGCCCCCTCGGGTCGGCACAGCAGACCTCTTAGTAATGGTCCCCAGGGAGTACAGGGACTGAGAAACGGAAATACTACCATCCTCCAGCCAATCTGTTGGGAGGACTGCTTGCAGAGGACTCGTGCTCCAGATGTTGCACTAGAGGCGCTGCAAGTGTGAGCAGCAGGTAGATGAAACTCAAGAGAAAAGGTGTGGATAAATGAAACTAGCCCATGATGAACCTGTTTTCTCCGTGACCACAATATTAACCAGGATGAATGGCGGTGGCAGTGGGCCTGCATCACAGGTTGCAGCAGATGTTCTCAATATTTCTATTAAAATTTCCTTATTTCCATATGCAAGAGGAGCCCCAGAGCTGCATCCTTATGGTAGCTACCATGCCGTGatgtaagctgccattcactggggagctttggcaatagaattggctagatcaggaagcctatgtcaactatggaacaacaacttgcagctcatctctattg</dnaseq>| | sequence = <dnaseq>CCCTCTGGAAGCAAAAAGAGAAACGACTCCAATCACCGTCTATATCTTATTGCATTGAGAGATAGCAGGTGTTTAGGCTGCAGCTATTGTCTGCCTTCCTCCCTGAGCTCACATAACAAGGATGAAAGAGTCTAAGGAACTTAGTTTCCCCAAACGCTCTTGCATAGGAGGGCGGGGAAACTTCGGAATCAAGGACTTAAAGAAATGCAATTGAGTCCCAACTCGCAAAGTGTGTCAGTCTCCATGTGGTTCCGTCCTTCCGCCGTCACTGTCTAGTCTCATCTAGTGTCGTTCTTCTGCTTTCTGTAGATCTCTAGGAACTCAGGATTCCCTGCCGCTTAGCCGTCGAGCTCCCGACCCCTCCGCATCCCTAGCCGGGAAGGACTGAGAGCTGAGCTCCAAGGTCGTGGTCTGGTCCTCAGGGATGAGGTCCCGGGTCCAGACTCTTTCCTTGGTCAGCAACTCCTGCTTAGAAGCTCCCCGCCCCGAATGGAATCGTGACCTGGCGCTAGGTCCCCCGCTGGGAGTGCCCGAGGCTTTCCTGAAGGCCCCAGGCCTTCAGGCCGCCAGGGTCCTAAGGTGCCTGTGGCGGCCCCTCGTCCGCCTGAGCCCTGAGATCAGCGCGGCCCTCGGTGCTGCAGGGCCCCAGGGCGGCCAGGAAACACCTGCCCGAAGTCCAGGCCCGGCCCCACTGCAGTCCAGGACCCTAATTCTCGAGTGTCTCTTCACGACCCTGACCCCGGAAGGGCGCTCCCTTGCGAACGAATTTTTAATTCTGCGGACTGGGATCCCTTGTAGGGGCCCCTCCGAGGGCCCCTCCCACCCCTTTCCCTGGACTAGCGAACTCCGACCCTAAGCGCGGCCCCGCAGGGAGCGGATCCCGGAAGCTAGGCCCATATCCGGCCGCGGAGCCTTGCGCGCGGGGTTGGCTGCCGGGAGGTCGACGCTAGTGCGGTcccccgcgcggcggaggggcccgggccgcggTATCTGCGCACTGAGACGTCGGCGGAAGGCTAGAGGCCGTGCTCTCGCCCCCGCAGAAGGCCACCACTCCTTGAGAAGGCCGGAGGGACAAAGCACCGGGCCTGCGCCGGGGGCATTCAAGAAGGAAGCCAGGCCCGACCGGGGGTGGCGCACGCTTCCCGAACCCCAGGCCCACGGCCCGGTTCCGCGCGGGCAGTTGGCGCCCCCTCGGGTCGGCACAGCAGACCTCTTAGTAATGGTCCCCAGGGAGTACAGGGACTGAGAAACGGAAATACTACCATCCTCCAGCCAATCTGTTGGGAGGACTGCTTGCAGAGGACTCGTGCTCCAGATGTTGCACTAGAGGCGCTGCAAGTGTGAGCAGCAGGTAGATGAAACTCAAGAGAAAAGGTGTGGATAAATGAAACTAGCCCATGATGAACCTGTTTTCTCCGTGACCACAATATTAACCAGGATGAATGGCGGTGGCAGTGGGCCTGCATCACAGGTTGCAGCAGATGTTCTCAATATTTCTATTAAAATTTCCTTATTTCCATATGCAAGAGGAGCCCCAGAGCTGCATCCTTATGGTAGCTACCATGCCGTGatgtaagctgccattcactggggagctttggcaatagaattggctagatcaggaagcctatgtcaactatggaacaacaacttgcagctcatctctattg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG041023]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG041023]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:25, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102809 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1673 nt |
Genomic location |
chr5-:92889470..92907441 |
Exon number |
5 |
Exons |
92889470..92889569,92890580..92890701,92899070..92899169,92905596..92905708,92906204..92907441 |
Genome context |
|
Sequence |
000001 CCCTCTGGAA GCAAAAAGAG AAACGACTCC AATCACCGTC TATATCTTAT TGCATTGAGA GATAGCAGGT GTTTAGGCTG 000080
000081 CAGCTATTGT CTGCCTTCCT CCCTGAGCTC ACATAACAAG GATGAAAGAG TCTAAGGAAC TTAGTTTCCC CAAACGCTCT 000160 000161 TGCATAGGAG GGCGGGGAAA CTTCGGAATC AAGGACTTAA AGAAATGCAA TTGAGTCCCA ACTCGCAAAG TGTGTCAGTC 000240 000241 TCCATGTGGT TCCGTCCTTC CGCCGTCACT GTCTAGTCTC ATCTAGTGTC GTTCTTCTGC TTTCTGTAGA TCTCTAGGAA 000320 000321 CTCAGGATTC CCTGCCGCTT AGCCGTCGAG CTCCCGACCC CTCCGCATCC CTAGCCGGGA AGGACTGAGA GCTGAGCTCC 000400 000401 AAGGTCGTGG TCTGGTCCTC AGGGATGAGG TCCCGGGTCC AGACTCTTTC CTTGGTCAGC AACTCCTGCT TAGAAGCTCC 000480 000481 CCGCCCCGAA TGGAATCGTG ACCTGGCGCT AGGTCCCCCG CTGGGAGTGC CCGAGGCTTT CCTGAAGGCC CCAGGCCTTC 000560 000561 AGGCCGCCAG GGTCCTAAGG TGCCTGTGGC GGCCCCTCGT CCGCCTGAGC CCTGAGATCA GCGCGGCCCT CGGTGCTGCA 000640 000641 GGGCCCCAGG GCGGCCAGGA AACACCTGCC CGAAGTCCAG GCCCGGCCCC ACTGCAGTCC AGGACCCTAA TTCTCGAGTG 000720 000721 TCTCTTCACG ACCCTGACCC CGGAAGGGCG CTCCCTTGCG AACGAATTTT TAATTCTGCG GACTGGGATC CCTTGTAGGG 000800 000801 GCCCCTCCGA GGGCCCCTCC CACCCCTTTC CCTGGACTAG CGAACTCCGA CCCTAAGCGC GGCCCCGCAG GGAGCGGATC 000880 000881 CCGGAAGCTA GGCCCATATC CGGCCGCGGA GCCTTGCGCG CGGGGTTGGC TGCCGGGAGG TCGACGCTAG TGCGGTcccc 000960 000961 cgcgcggcgg aggggcccgg gccgcggTAT CTGCGCACTG AGACGTCGGC GGAAGGCTAG AGGCCGTGCT CTCGCCCCCG 001040 001041 CAGAAGGCCA CCACTCCTTG AGAAGGCCGG AGGGACAAAG CACCGGGCCT GCGCCGGGGG CATTCAAGAA GGAAGCCAGG 001120 001121 CCCGACCGGG GGTGGCGCAC GCTTCCCGAA CCCCAGGCCC ACGGCCCGGT TCCGCGCGGG CAGTTGGCGC CCCCTCGGGT 001200 001201 CGGCACAGCA GACCTCTTAG TAATGGTCCC CAGGGAGTAC AGGGACTGAG AAACGGAAAT ACTACCATCC TCCAGCCAAT 001280 001281 CTGTTGGGAG GACTGCTTGC AGAGGACTCG TGCTCCAGAT GTTGCACTAG AGGCGCTGCA AGTGTGAGCA GCAGGTAGAT 001360 001361 GAAACTCAAG AGAAAAGGTG TGGATAAATG AAACTAGCCC ATGATGAACC TGTTTTCTCC GTGACCACAA TATTAACCAG 001440 001441 GATGAATGGC GGTGGCAGTG GGCCTGCATC ACAGGTTGCA GCAGATGTTC TCAATATTTC TATTAAAATT TCCTTATTTC 001520 001521 CATATGCAAG AGGAGCCCCA GAGCTGCATC CTTATGGTAG CTACCATGCC GTGatgtaag ctgccattca ctggggagct 001600 001601 ttggcaatag aattggctag atcaggaagc ctatgtcaac tatggaacaa caacttgcag ctcatctcta ttg |
Predicted Small Protein
Name | NONHSAT102809_smProtein_1445:1573 |
Length | 43 |
Molecular weight | 4921.9126 |
Aromaticity | 0.119047619048 |
Instability index | 78.5857142857 |
Isoelectric point | 6.80682373047 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0212986095339 |
Amino acid sequence | MAVAVGLHHRLQQMFSIFLLKFPYFHMQEEPQSCILMVATMP |
Secondary structure | LHHHLHHHHHHHHHHHHHHHLLLLLLLLLLLLEEEEEEEELL |
PRMN | - |
PiMo | - |