Difference between revisions of "NONHSAT102970"
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sequence = <dnaseq>CGGACTCTGACTGCGCGGAGACCGCTGGACTCTGGTCGCGGCCTTAGTCCGCTGATCCTCGCTTGGGTGCCCGCCCTTAGCGGCCCGGCGTTGAATTCCGGGAAGTGGGAGCTTCAGGCTCGCTCCGTGCGGaggcggggttttgtcatgttgctaggttggtgttgaactcctgagctcgagcgatccacctgccactgccttccaaagtgctggaattacaggcgtgagccacggcgcccggTGGCCGAGGTTAATAATAATTAAAAGTTTCTAATCCCATTGTTCAGTTATTTGATTTGGTGTAAAGGCGCACTTTCCAAGTCAGATGAGTTTGTGGTAACATACATTCCCCAAATAATTATTTTTCCCTTGTGGGAAATATTCCAGTTTTAGGCTACCAGCTGTTTAAACAGTTTGGTTCAAATCCTTCAAAAAAATCTCAAAACATAACTCCACATATGTATTTACTACATATTGAAGGGTGTATTCACTTGGAGAAGTAGGAGAAAGCAAACAGATGCCAATGGCCTTTTTGAAAACATGTATCTATCAGCAATAATTGAATAGCAAAACGAAGTGGAACACTACCATCCTTTGCAATATTAGATAGTTTTAATACTGGGTTGTGAGGAATGAAAAGATCATACAaatcgtcatttctgaagtcatttctgaagtcgtcatttctgaaCTGAGTGCTAATTTTTCATATTAAGCTTTATGTTAATATCCTTAATGAGAGGAACTTCCTGTGCCCGTAATTTCTCCAGAGAAACTATTAACATACACAGAATGTTGTAATCAGAAGTATAGTTCAGTTAATAAAGTCCTCAATTACAACTCTGACATTTTGTCATTGTCTTATGAAAAGAATTACTGTATATACAGTCTATTTTACGTTTTCCGGAAGCACGTCAGGCAGGTTTTTTGTTTTTTTACTACTAATTGTGCCATTGAATATGCTATTCTGTCGTATTGTGCCATCAAACATGCTATTCGAAAAAAGATCTTGCCCAATTTGTAATAAAATATTGAACATTGGAGATTTAGATTTCGAGTAAAATCATACTTTATTGCTTTGCAGAAGTACACAGTAGGTGG</dnaseq>| | sequence = <dnaseq>CGGACTCTGACTGCGCGGAGACCGCTGGACTCTGGTCGCGGCCTTAGTCCGCTGATCCTCGCTTGGGTGCCCGCCCTTAGCGGCCCGGCGTTGAATTCCGGGAAGTGGGAGCTTCAGGCTCGCTCCGTGCGGaggcggggttttgtcatgttgctaggttggtgttgaactcctgagctcgagcgatccacctgccactgccttccaaagtgctggaattacaggcgtgagccacggcgcccggTGGCCGAGGTTAATAATAATTAAAAGTTTCTAATCCCATTGTTCAGTTATTTGATTTGGTGTAAAGGCGCACTTTCCAAGTCAGATGAGTTTGTGGTAACATACATTCCCCAAATAATTATTTTTCCCTTGTGGGAAATATTCCAGTTTTAGGCTACCAGCTGTTTAAACAGTTTGGTTCAAATCCTTCAAAAAAATCTCAAAACATAACTCCACATATGTATTTACTACATATTGAAGGGTGTATTCACTTGGAGAAGTAGGAGAAAGCAAACAGATGCCAATGGCCTTTTTGAAAACATGTATCTATCAGCAATAATTGAATAGCAAAACGAAGTGGAACACTACCATCCTTTGCAATATTAGATAGTTTTAATACTGGGTTGTGAGGAATGAAAAGATCATACAaatcgtcatttctgaagtcatttctgaagtcgtcatttctgaaCTGAGTGCTAATTTTTCATATTAAGCTTTATGTTAATATCCTTAATGAGAGGAACTTCCTGTGCCCGTAATTTCTCCAGAGAAACTATTAACATACACAGAATGTTGTAATCAGAAGTATAGTTCAGTTAATAAAGTCCTCAATTACAACTCTGACATTTTGTCATTGTCTTATGAAAAGAATTACTGTATATACAGTCTATTTTACGTTTTCCGGAAGCACGTCAGGCAGGTTTTTTGTTTTTTTACTACTAATTGTGCCATTGAATATGCTATTCTGTCGTATTGTGCCATCAAACATGCTATTCGAAAAAAGATCTTGCCCAATTTGTAATAAAATATTGAACATTGGAGATTTAGATTTCGAGTAAAATCATACTTTATTGCTTTGCAGAAGTACACAGTAGGTGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG041119]] | + | [[Category:Intergenic]][[Category:NONHSAG041119]][[Category:Transcripts]] |
Latest revision as of 01:25, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT102970 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1104 nt |
| Genomic location |
chr5+:98264884..98266772 |
| Exon number |
2 |
| Exons |
98264884..98265015,98265801..98266772 |
| Genome context |
|
| Sequence |
000001 CGGACTCTGA CTGCGCGGAG ACCGCTGGAC TCTGGTCGCG GCCTTAGTCC GCTGATCCTC GCTTGGGTGC CCGCCCTTAG 000080
000081 CGGCCCGGCG TTGAATTCCG GGAAGTGGGA GCTTCAGGCT CGCTCCGTGC GGaggcgggg ttttgtcatg ttgctaggtt 000160 000161 ggtgttgaac tcctgagctc gagcgatcca cctgccactg ccttccaaag tgctggaatt acaggcgtga gccacggcgc 000240 000241 ccggTGGCCG AGGTTAATAA TAATTAAAAG TTTCTAATCC CATTGTTCAG TTATTTGATT TGGTGTAAAG GCGCACTTTC 000320 000321 CAAGTCAGAT GAGTTTGTGG TAACATACAT TCCCCAAATA ATTATTTTTC CCTTGTGGGA AATATTCCAG TTTTAGGCTA 000400 000401 CCAGCTGTTT AAACAGTTTG GTTCAAATCC TTCAAAAAAA TCTCAAAACA TAACTCCACA TATGTATTTA CTACATATTG 000480 000481 AAGGGTGTAT TCACTTGGAG AAGTAGGAGA AAGCAAACAG ATGCCAATGG CCTTTTTGAA AACATGTATC TATCAGCAAT 000560 000561 AATTGAATAG CAAAACGAAG TGGAACACTA CCATCCTTTG CAATATTAGA TAGTTTTAAT ACTGGGTTGT GAGGAATGAA 000640 000641 AAGATCATAC Aaatcgtcat ttctgaagtc atttctgaag tcgtcatttc tgaaCTGAGT GCTAATTTTT CATATTAAGC 000720 000721 TTTATGTTAA TATCCTTAAT GAGAGGAACT TCCTGTGCCC GTAATTTCTC CAGAGAAACT ATTAACATAC ACAGAATGTT 000800 000801 GTAATCAGAA GTATAGTTCA GTTAATAAAG TCCTCAATTA CAACTCTGAC ATTTTGTCAT TGTCTTATGA AAAGAATTAC 000880 000881 TGTATATACA GTCTATTTTA CGTTTTCCGG AAGCACGTCA GGCAGGTTTT TTGTTTTTTT ACTACTAATT GTGCCATTGA 000960 000961 ATATGCTATT CTGTCGTATT GTGCCATCAA ACATGCTATT CGAAAAAAGA TCTTGCCCAA TTTGTAATAA AATATTGAAC 001040 001041 ATTGGAGATT TAGATTTCGA GTAAAATCAT ACTTTATTGC TTTGCAGAAG TACACAGTAG GTGG |
Predicted Small Protein
| Name | NONHSAT102970_smProtein_866:1063 |
| Length | 66 |
| Molecular weight | 7561.0047 |
| Aromaticity | 0.153846153846 |
| Instability index | 50.0646153846 |
| Isoelectric point | 9.01885986328 |
| Runs | 11 |
| Runs residual | 0.0189423076923 |
| Runs probability | 0.0524802877745 |
| Amino acid sequence | MKRITVYTVYFTFSGSTSGRFFVFLLLIVPLNMLFCRIVPSNMLFEKRSCPICNKILNIG DLDFE |
| Secondary structure | LLEEEEEEEEEEELLLLLLLLEEEEEEEELLLLEEEEEELLLLEEELLLLLHHHHHHLLL LLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL LLLLL |
| PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii iiiii |
