Difference between revisions of "NONHSAT105018"
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sequence = <dnaseq>GAAGGCTCATGTGGAATTAAACCCGGGCTAAATAGGTGGCCCAGGGCAGCCGGGGCCCCATGCAGCTCCTCGAAAGACAAATGTATTTTGAGCAGGCctggctcctactccttcagGGAGGTGAGCTGCTCAGTTGCCAGAGTATCAACCTGAGCCCAGGACACTGCCAGACTGCTGAGTCAAAGAGGGTTTAGCAGCCCATTTTCATAGACAGACAGGTGAGAGGAGGATGCTGGACATGGTCCCAGAGACATGGGGACTCAAGAAACATGAAGATCTGTTCACAGCTAAGGGCACATTTCCATGCCGAGAAATCAGGCGTGAGCGCAAGAGTCCTATCGTCTACCAGAAAAAGAAATCTTTGGGAGCATTCAAGGAGGAATGGCTTCATGATGGCAATGAGCGGCATCGCCTGAAAGACAGCCTTCGAGAGTCTCCCAGAGCCGCTGAGGAGCAAGGCAGAGAACTGCAATCCAAGCAAATGTGGTGGGTGTGAAGCTTTCAAGAAGTTGGGTCAAGAACAAGGACTGAAAGAGGAGCATCAATTTatgggggccactgaggctttcagagattttgtgacctaccaaactggcacagctagtaaatggatgacaagCCATTAACATGGAAAGAAGAAGAGGCATCCAAAGTGTTGGGTCCGCATCGCCCTTGCCTTGGAGGAAGCTCCAAATAGAGGGAAGGATGGTTTCCAGCAGTCCCTGAAGTGCCTTTCCTCCTTCGTGGGATCCAGTTACACCCAGCAGACTTCAGTTTGAATAAACAGAACTAGATGAATACACCTAGGGAATCTGTGAGGCCAGCCTCAGCTTTTAACATCCAGCTACAGGGAGGTGAGAGAAGCTTCAGCCAGTTGTTTTCTAAGAGCGAGATAAAGAAACCACCCTCCAATTATGCATCAAATTCTGCTTCACAGTTGAATAAGGGGCATGAAATCGGATGTTTTTCAAGCTCAATATAAAGCAGTGGAAAAC</dnaseq>| | sequence = <dnaseq>GAAGGCTCATGTGGAATTAAACCCGGGCTAAATAGGTGGCCCAGGGCAGCCGGGGCCCCATGCAGCTCCTCGAAAGACAAATGTATTTTGAGCAGGCctggctcctactccttcagGGAGGTGAGCTGCTCAGTTGCCAGAGTATCAACCTGAGCCCAGGACACTGCCAGACTGCTGAGTCAAAGAGGGTTTAGCAGCCCATTTTCATAGACAGACAGGTGAGAGGAGGATGCTGGACATGGTCCCAGAGACATGGGGACTCAAGAAACATGAAGATCTGTTCACAGCTAAGGGCACATTTCCATGCCGAGAAATCAGGCGTGAGCGCAAGAGTCCTATCGTCTACCAGAAAAAGAAATCTTTGGGAGCATTCAAGGAGGAATGGCTTCATGATGGCAATGAGCGGCATCGCCTGAAAGACAGCCTTCGAGAGTCTCCCAGAGCCGCTGAGGAGCAAGGCAGAGAACTGCAATCCAAGCAAATGTGGTGGGTGTGAAGCTTTCAAGAAGTTGGGTCAAGAACAAGGACTGAAAGAGGAGCATCAATTTatgggggccactgaggctttcagagattttgtgacctaccaaactggcacagctagtaaatggatgacaagCCATTAACATGGAAAGAAGAAGAGGCATCCAAAGTGTTGGGTCCGCATCGCCCTTGCCTTGGAGGAAGCTCCAAATAGAGGGAAGGATGGTTTCCAGCAGTCCCTGAAGTGCCTTTCCTCCTTCGTGGGATCCAGTTACACCCAGCAGACTTCAGTTTGAATAAACAGAACTAGATGAATACACCTAGGGAATCTGTGAGGCCAGCCTCAGCTTTTAACATCCAGCTACAGGGAGGTGAGAGAAGCTTCAGCCAGTTGTTTTCTAAGAGCGAGATAAAGAAACCACCCTCCAATTATGCATCAAATTCTGCTTCACAGTTGAATAAGGGGCATGAAATCGGATGTTTTTCAAGCTCAATATAAAGCAGTGGAAAAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:NONHSAG042183]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG042183]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:35, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT105018 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
995 nt |
| Genomic location |
chr5+:168440647..168463511 |
| Exon number |
6 |
| Exons |
168440647..168440762,168445398..168445646,168449138..168449233,168453316..168453402,168457391..168457461,168463136..168463511 |
| Genome context |
|
| Sequence |
000001 GAAGGCTCAT GTGGAATTAA ACCCGGGCTA AATAGGTGGC CCAGGGCAGC CGGGGCCCCA TGCAGCTCCT CGAAAGACAA 000080
000081 ATGTATTTTG AGCAGGCctg gctcctactc cttcagGGAG GTGAGCTGCT CAGTTGCCAG AGTATCAACC TGAGCCCAGG 000160 000161 ACACTGCCAG ACTGCTGAGT CAAAGAGGGT TTAGCAGCCC ATTTTCATAG ACAGACAGGT GAGAGGAGGA TGCTGGACAT 000240 000241 GGTCCCAGAG ACATGGGGAC TCAAGAAACA TGAAGATCTG TTCACAGCTA AGGGCACATT TCCATGCCGA GAAATCAGGC 000320 000321 GTGAGCGCAA GAGTCCTATC GTCTACCAGA AAAAGAAATC TTTGGGAGCA TTCAAGGAGG AATGGCTTCA TGATGGCAAT 000400 000401 GAGCGGCATC GCCTGAAAGA CAGCCTTCGA GAGTCTCCCA GAGCCGCTGA GGAGCAAGGC AGAGAACTGC AATCCAAGCA 000480 000481 AATGTGGTGG GTGTGAAGCT TTCAAGAAGT TGGGTCAAGA ACAAGGACTG AAAGAGGAGC ATCAATTTat gggggccact 000560 000561 gaggctttca gagattttgt gacctaccaa actggcacag ctagtaaatg gatgacaagC CATTAACATG GAAAGAAGAA 000640 000641 GAGGCATCCA AAGTGTTGGG TCCGCATCGC CCTTGCCTTG GAGGAAGCTC CAAATAGAGG GAAGGATGGT TTCCAGCAGT 000720 000721 CCCTGAAGTG CCTTTCCTCC TTCGTGGGAT CCAGTTACAC CCAGCAGACT TCAGTTTGAA TAAACAGAAC TAGATGAATA 000800 000801 CACCTAGGGA ATCTGTGAGG CCAGCCTCAG CTTTTAACAT CCAGCTACAG GGAGGTGAGA GAAGCTTCAG CCAGTTGTTT 000880 000881 TCTAAGAGCG AGATAAAGAA ACCACCCTCC AATTATGCAT CAAATTCTGC TTCACAGTTG AATAAGGGGC ATGAAATCGG 000960 000961 ATGTTTTTCA AGCTCAATAT AAAGCAGTGG AAAAC |
Predicted Small Protein
| Name | NONHSAT105018_smProtein_269:415 |
| Length | 49 |
| Molecular weight | 5475.3495 |
| Aromaticity | 0.0625 |
| Instability index | 53.5979166667 |
| Isoelectric point | 11.7178344727 |
| Runs | 9 |
| Runs residual | 0.0219298245614 |
| Runs probability | 0.0396474906279 |
| Amino acid sequence | MKICSQLRAHFHAEKSGVSARVLSSTRKRNLWEHSRRNGFMMAMSGIA |
| Secondary structure | LLHHHHHHHHHHHHLLLLEEEEEELLLHHHHHHHHHHLHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
