Difference between revisions of "NONHSAT106634"

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sequence = <dnaseq>CTGTCTTTTCTCTCCAGTAACAGACCTGACCTGTTGCAGGTGGGGAGTCTGCCACTGAGAACAGCAAGAGGTATTTTTGCAGTCTGGCTGCTACCCTTCCTCCCATCTTGCATGCACACTGTGTAAAAACTTGTGGTCCAGCTCGTCCATGATTCTGCAGCTAGCATGGTCCCTCCTGCAAAGTATACCTGCTCTCTTTGAAACCGACATTAAAAATCAGAAAATCCCAGCTTCTCTTAGTAGCCATATTCAGCAGTTTCTCAGATTAATGCAGTCTTTTTGAGGCCTATTTTTTTTTTAAGTTTTCCAGAAGGAAGAAAGGGCCAGGGCAGGGGTTTGTTACCGGAAAAAGGGTCTTATCCCAGATGCCAAGAGTGAGTTCTTGAATCTCTCACGGGAAAGAATTCAGGGTCTTTATTTACTTAGCATCATTAACTTATTCCCTCAACCTTAAATATCTTGTGACCAGGACTGCCCAATCCCCTGGGACTATAACCCAGCAGGTTTGGCTTTATCCAGCCTCTATTCAGGATGGGGGCACTCTGGTTAGGACGACTCTGACAGATTCACTGCAGCACCACCGAGGGCTCCTCCAGAGCTAAGAGCAGGAGAAGCAAGGCCACCCCAACACACAGGAACCACCAGACTTGAATGGGCAACAGCAAGATTCCAGCAGGAACTATGAGATCCAAAACATCCAGTTATTAGGGGTTGTTACCACAGGAAGGTGCTGAAGTCAGCACAGAGCAGAGGACTTGCAACCAAGAGCTTAAAATTTATTTTAAGAGTTGTTTGTCTGCTTGTTGGCAATTTTTGAAGCCTTAAATATATTTTAATTCAATATATTAAGAAATTATTATTTCAATATACAACCTGGCTGGGTACAGTGGCTCACATCTATAACCCTAGCACTTTAGGAGACTGAGGCAGGAGGATTACTTGAACCCAAGAGTTCAATACCAGCCTGGGCAACAAAGTTAGATCTCGTCTCTACAAAAAATAAAAAAATTAGTTGGGAGTGGTGGCACATACCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAATTTGAGGTTGCAGTGAGCCATGATTGCACCACTGCACTCCAGCCAGCCATGATCAACAGGGGTTTATCCCACATGCATAAGGCTGGCTCAACATTCAAAAATCAATTAAGGTAGTCCATCACATCAACTGGTTGAGAAAAAACATTTTATTACATTTTACATAAAAATACATACACAGGGGTGAGTAGTGGCTTACACCTATAATACAACACTTCGGGAGGCCAAGAGGCAGGAGGATCGCTTGAGGTCAGGAGTTTGAGACAAGCCTGGGCAAAACAGTGGCAAAAAAATCTCTACAAAAAATAAATAAATAAATAAATAAAAATCAGCCGGGCATGGTGGCACATGCCAGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGGTTCCCCGCTTGAGCACAGAAGTTGTAGGCTGTGGTGAGCTAGGATCACACCTCTAAAGCCTGGGGCAGAGTGGGGCCCCATCTCTTCAAACAAACAAACAAACCATATACAGAAGAAAATAGAAGGACAGTGTTATCATCTTGCTGTGGGGAATATCTTTCTAAGTAAGTTCCTAGAAACAAAGCAAAATGAAAAGCAACTTAATGGGAGGATGTATTTGTAACATATAAAATGACACGGTGTTGATATCTATCATATACAAAAAGCTTCAACAAATCTACATGATAAACAACCGCACAGAAAATGCACAAAATATATGACAAGACAATTCAGAGAAAAGGAAATAGAAATGGTTAAGCATTTGAAGAGATGCACAACTTCACTAATCATCAAGAACACGCAAATTAAAACAAGATACCACTTTTTAAACATCTGGTTTTAAACGATTCCGAGTTGAATATTCAGTGCTGGGAATGGTCTGTGGAATCAGGCACTTTCCTACACTGTAAGTGGAAATGTAA</dnaseq>|
 
sequence = <dnaseq>CTGTCTTTTCTCTCCAGTAACAGACCTGACCTGTTGCAGGTGGGGAGTCTGCCACTGAGAACAGCAAGAGGTATTTTTGCAGTCTGGCTGCTACCCTTCCTCCCATCTTGCATGCACACTGTGTAAAAACTTGTGGTCCAGCTCGTCCATGATTCTGCAGCTAGCATGGTCCCTCCTGCAAAGTATACCTGCTCTCTTTGAAACCGACATTAAAAATCAGAAAATCCCAGCTTCTCTTAGTAGCCATATTCAGCAGTTTCTCAGATTAATGCAGTCTTTTTGAGGCCTATTTTTTTTTTAAGTTTTCCAGAAGGAAGAAAGGGCCAGGGCAGGGGTTTGTTACCGGAAAAAGGGTCTTATCCCAGATGCCAAGAGTGAGTTCTTGAATCTCTCACGGGAAAGAATTCAGGGTCTTTATTTACTTAGCATCATTAACTTATTCCCTCAACCTTAAATATCTTGTGACCAGGACTGCCCAATCCCCTGGGACTATAACCCAGCAGGTTTGGCTTTATCCAGCCTCTATTCAGGATGGGGGCACTCTGGTTAGGACGACTCTGACAGATTCACTGCAGCACCACCGAGGGCTCCTCCAGAGCTAAGAGCAGGAGAAGCAAGGCCACCCCAACACACAGGAACCACCAGACTTGAATGGGCAACAGCAAGATTCCAGCAGGAACTATGAGATCCAAAACATCCAGTTATTAGGGGTTGTTACCACAGGAAGGTGCTGAAGTCAGCACAGAGCAGAGGACTTGCAACCAAGAGCTTAAAATTTATTTTAAGAGTTGTTTGTCTGCTTGTTGGCAATTTTTGAAGCCTTAAATATATTTTAATTCAATATATTAAGAAATTATTATTTCAATATACAACCTGGCTGGGTACAGTGGCTCACATCTATAACCCTAGCACTTTAGGAGACTGAGGCAGGAGGATTACTTGAACCCAAGAGTTCAATACCAGCCTGGGCAACAAAGTTAGATCTCGTCTCTACAAAAAATAAAAAAATTAGTTGGGAGTGGTGGCACATACCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAATTTGAGGTTGCAGTGAGCCATGATTGCACCACTGCACTCCAGCCAGCCATGATCAACAGGGGTTTATCCCACATGCATAAGGCTGGCTCAACATTCAAAAATCAATTAAGGTAGTCCATCACATCAACTGGTTGAGAAAAAACATTTTATTACATTTTACATAAAAATACATACACAGGGGTGAGTAGTGGCTTACACCTATAATACAACACTTCGGGAGGCCAAGAGGCAGGAGGATCGCTTGAGGTCAGGAGTTTGAGACAAGCCTGGGCAAAACAGTGGCAAAAAAATCTCTACAAAAAATAAATAAATAAATAAATAAAAATCAGCCGGGCATGGTGGCACATGCCAGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGGTTCCCCGCTTGAGCACAGAAGTTGTAGGCTGTGGTGAGCTAGGATCACACCTCTAAAGCCTGGGGCAGAGTGGGGCCCCATCTCTTCAAACAAACAAACAAACCATATACAGAAGAAAATAGAAGGACAGTGTTATCATCTTGCTGTGGGGAATATCTTTCTAAGTAAGTTCCTAGAAACAAAGCAAAATGAAAAGCAACTTAATGGGAGGATGTATTTGTAACATATAAAATGACACGGTGTTGATATCTATCATATACAAAAAGCTTCAACAAATCTACATGATAAACAACCGCACAGAAAATGCACAAAATATATGACAAGACAATTCAGAGAAAAGGAAATAGAAATGGTTAAGCATTTGAAGAGATGCACAACTTCACTAATCATCAAGAACACGCAAATTAAAACAAGATACCACTTTTTAAACATCTGGTTTTAAACGATTCCGAGTTGAATATTCAGTGCTGGGAATGGTCTGTGGAATCAGGCACTTTCCTACACTGTAAGTGGAAATGTAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG042639]][[Category:Transcripts]]

Latest revision as of 01:40, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT106634

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1995 nt

Genomic location

chr6-:2259533..2273651

Exon number

7

Exons

2259533..2260309,2263835..2263918,2269932..2270247,2271891..2271926,2271947..2272620,2273526..2273562,2273579..2273651

Genome context

Sequence
000001 CTGTCTTTTC TCTCCAGTAA CAGACCTGAC CTGTTGCAGG TGGGGAGTCT GCCACTGAGA ACAGCAAGAG GTATTTTTGC 000080
000081 AGTCTGGCTG CTACCCTTCC TCCCATCTTG CATGCACACT GTGTAAAAAC TTGTGGTCCA GCTCGTCCAT GATTCTGCAG 000160
000161 CTAGCATGGT CCCTCCTGCA AAGTATACCT GCTCTCTTTG AAACCGACAT TAAAAATCAG AAAATCCCAG CTTCTCTTAG 000240
000241 TAGCCATATT CAGCAGTTTC TCAGATTAAT GCAGTCTTTT TGAGGCCTAT TTTTTTTTTA AGTTTTCCAG AAGGAAGAAA 000320
000321 GGGCCAGGGC AGGGGTTTGT TACCGGAAAA AGGGTCTTAT CCCAGATGCC AAGAGTGAGT TCTTGAATCT CTCACGGGAA 000400
000401 AGAATTCAGG GTCTTTATTT ACTTAGCATC ATTAACTTAT TCCCTCAACC TTAAATATCT TGTGACCAGG ACTGCCCAAT 000480
000481 CCCCTGGGAC TATAACCCAG CAGGTTTGGC TTTATCCAGC CTCTATTCAG GATGGGGGCA CTCTGGTTAG GACGACTCTG 000560
000561 ACAGATTCAC TGCAGCACCA CCGAGGGCTC CTCCAGAGCT AAGAGCAGGA GAAGCAAGGC CACCCCAACA CACAGGAACC 000640
000641 ACCAGACTTG AATGGGCAAC AGCAAGATTC CAGCAGGAAC TATGAGATCC AAAACATCCA GTTATTAGGG GTTGTTACCA 000720
000721 CAGGAAGGTG CTGAAGTCAG CACAGAGCAG AGGACTTGCA ACCAAGAGCT TAAAATTTAT TTTAAGAGTT GTTTGTCTGC 000800
000801 TTGTTGGCAA TTTTTGAAGC CTTAAATATA TTTTAATTCA ATATATTAAG AAATTATTAT TTCAATATAC AACCTGGCTG 000880
000881 GGTACAGTGG CTCACATCTA TAACCCTAGC ACTTTAGGAG ACTGAGGCAG GAGGATTACT TGAACCCAAG AGTTCAATAC 000960
000961 CAGCCTGGGC AACAAAGTTA GATCTCGTCT CTACAAAAAA TAAAAAAATT AGTTGGGAGT GGTGGCACAT ACCTGTAGTC 001040
001041 CTAGCTACTT GGGAGGCTGA GGCAGGAGGA TCCCTTGAGC CCAGGAATTT GAGGTTGCAG TGAGCCATGA TTGCACCACT 001120
001121 GCACTCCAGC CAGCCATGAT CAACAGGGGT TTATCCCACA TGCATAAGGC TGGCTCAACA TTCAAAAATC AATTAAGGTA 001200
001201 GTCCATCACA TCAACTGGTT GAGAAAAAAC ATTTTATTAC ATTTTACATA AAAATACATA CACAGGGGTG AGTAGTGGCT 001280
001281 TACACCTATA ATACAACACT TCGGGAGGCC AAGAGGCAGG AGGATCGCTT GAGGTCAGGA GTTTGAGACA AGCCTGGGCA 001360
001361 AAACAGTGGC AAAAAAATCT CTACAAAAAA TAAATAAATA AATAAATAAA AATCAGCCGG GCATGGTGGC ACATGCCAGT 001440
001441 AGTCCCAGCT ACTCGGGAGG CTGAGGTGGG AGGGTTCCCC GCTTGAGCAC AGAAGTTGTA GGCTGTGGTG AGCTAGGATC 001520
001521 ACACCTCTAA AGCCTGGGGC AGAGTGGGGC CCCATCTCTT CAAACAAACA AACAAACCAT ATACAGAAGA AAATAGAAGG 001600
001601 ACAGTGTTAT CATCTTGCTG TGGGGAATAT CTTTCTAAGT AAGTTCCTAG AAACAAAGCA AAATGAAAAG CAACTTAATG 001680
001681 GGAGGATGTA TTTGTAACAT ATAAAATGAC ACGGTGTTGA TATCTATCAT ATACAAAAAG CTTCAACAAA TCTACATGAT 001760
001761 AAACAACCGC ACAGAAAATG CACAAAATAT ATGACAAGAC AATTCAGAGA AAAGGAAATA GAAATGGTTA AGCATTTGAA 001840
001841 GAGATGCACA ACTTCACTAA TCATCAAGAA CACGCAAATT AAAACAAGAT ACCACTTTTT AAACATCTGG TTTTAAACGA 001920
001921 TTCCGAGTTG AATATTCAGT GCTGGGAATG GTCTGTGGAA TCAGGCACTT TCCTACACTG TAAGTGGAAA TGTAA
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Predicted Small Protein

Name NONHSAT106634_smProtein_1790:1915
Length 42
Molecular weight 5183.1318
Aromaticity 0.121951219512
Instability index 41.7634146341
Isoelectric point 10.2920532227
Runs 9
Runs residual 0.0435433188688
Runs probability 0.0221299731103
Amino acid sequence MTRQFREKEIEMVKHLKRCTTSLIIKNTQIKTRYHFLNIWF
Secondary structure LLLHHHHHHHHHHHHHHHHLLLEEEELLEEEEEEEEELEEL
PRMN -
PiMo -