Difference between revisions of "NONHSAT106634"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>CTGTCTTTTCTCTCCAGTAACAGACCTGACCTGTTGCAGGTGGGGAGTCTGCCACTGAGAACAGCAAGAGGTATTTTTGCAGTCTGGCTGCTACCCTTCCTCCCATCTTGCATGCACACTGTGTAAAAACTTGTGGTCCAGCTCGTCCATGATTCTGCAGCTAGCATGGTCCCTCCTGCAAAGTATACCTGCTCTCTTTGAAACCGACATTAAAAATCAGAAAATCCCAGCTTCTCTTAGTAGCCATATTCAGCAGTTTCTCAGATTAATGCAGTCTTTTTGAGGCCTATTTTTTTTTTAAGTTTTCCAGAAGGAAGAAAGGGCCAGGGCAGGGGTTTGTTACCGGAAAAAGGGTCTTATCCCAGATGCCAAGAGTGAGTTCTTGAATCTCTCACGGGAAAGAATTCAGGGTCTTTATTTACTTAGCATCATTAACTTATTCCCTCAACCTTAAATATCTTGTGACCAGGACTGCCCAATCCCCTGGGACTATAACCCAGCAGGTTTGGCTTTATCCAGCCTCTATTCAGGATGGGGGCACTCTGGTTAGGACGACTCTGACAGATTCACTGCAGCACCACCGAGGGCTCCTCCAGAGCTAAGAGCAGGAGAAGCAAGGCCACCCCAACACACAGGAACCACCAGACTTGAATGGGCAACAGCAAGATTCCAGCAGGAACTATGAGATCCAAAACATCCAGTTATTAGGGGTTGTTACCACAGGAAGGTGCTGAAGTCAGCACAGAGCAGAGGACTTGCAACCAAGAGCTTAAAATTTATTTTAAGAGTTGTTTGTCTGCTTGTTGGCAATTTTTGAAGCCTTAAATATATTTTAATTCAATATATTAAGAAATTATTATTTCAATATACAACCTGGCTGGGTACAGTGGCTCACATCTATAACCCTAGCACTTTAGGAGACTGAGGCAGGAGGATTACTTGAACCCAAGAGTTCAATACCAGCCTGGGCAACAAAGTTAGATCTCGTCTCTACAAAAAATAAAAAAATTAGTTGGGAGTGGTGGCACATACCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAATTTGAGGTTGCAGTGAGCCATGATTGCACCACTGCACTCCAGCCAGCCATGATCAACAGGGGTTTATCCCACATGCATAAGGCTGGCTCAACATTCAAAAATCAATTAAGGTAGTCCATCACATCAACTGGTTGAGAAAAAACATTTTATTACATTTTACATAAAAATACATACACAGGGGTGAGTAGTGGCTTACACCTATAATACAACACTTCGGGAGGCCAAGAGGCAGGAGGATCGCTTGAGGTCAGGAGTTTGAGACAAGCCTGGGCAAAACAGTGGCAAAAAAATCTCTACAAAAAATAAATAAATAAATAAATAAAAATCAGCCGGGCATGGTGGCACATGCCAGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGGTTCCCCGCTTGAGCACAGAAGTTGTAGGCTGTGGTGAGCTAGGATCACACCTCTAAAGCCTGGGGCAGAGTGGGGCCCCATCTCTTCAAACAAACAAACAAACCATATACAGAAGAAAATAGAAGGACAGTGTTATCATCTTGCTGTGGGGAATATCTTTCTAAGTAAGTTCCTAGAAACAAAGCAAAATGAAAAGCAACTTAATGGGAGGATGTATTTGTAACATATAAAATGACACGGTGTTGATATCTATCATATACAAAAAGCTTCAACAAATCTACATGATAAACAACCGCACAGAAAATGCACAAAATATATGACAAGACAATTCAGAGAAAAGGAAATAGAAATGGTTAAGCATTTGAAGAGATGCACAACTTCACTAATCATCAAGAACACGCAAATTAAAACAAGATACCACTTTTTAAACATCTGGTTTTAAACGATTCCGAGTTGAATATTCAGTGCTGGGAATGGTCTGTGGAATCAGGCACTTTCCTACACTGTAAGTGGAAATGTAA</dnaseq>| | sequence = <dnaseq>CTGTCTTTTCTCTCCAGTAACAGACCTGACCTGTTGCAGGTGGGGAGTCTGCCACTGAGAACAGCAAGAGGTATTTTTGCAGTCTGGCTGCTACCCTTCCTCCCATCTTGCATGCACACTGTGTAAAAACTTGTGGTCCAGCTCGTCCATGATTCTGCAGCTAGCATGGTCCCTCCTGCAAAGTATACCTGCTCTCTTTGAAACCGACATTAAAAATCAGAAAATCCCAGCTTCTCTTAGTAGCCATATTCAGCAGTTTCTCAGATTAATGCAGTCTTTTTGAGGCCTATTTTTTTTTTAAGTTTTCCAGAAGGAAGAAAGGGCCAGGGCAGGGGTTTGTTACCGGAAAAAGGGTCTTATCCCAGATGCCAAGAGTGAGTTCTTGAATCTCTCACGGGAAAGAATTCAGGGTCTTTATTTACTTAGCATCATTAACTTATTCCCTCAACCTTAAATATCTTGTGACCAGGACTGCCCAATCCCCTGGGACTATAACCCAGCAGGTTTGGCTTTATCCAGCCTCTATTCAGGATGGGGGCACTCTGGTTAGGACGACTCTGACAGATTCACTGCAGCACCACCGAGGGCTCCTCCAGAGCTAAGAGCAGGAGAAGCAAGGCCACCCCAACACACAGGAACCACCAGACTTGAATGGGCAACAGCAAGATTCCAGCAGGAACTATGAGATCCAAAACATCCAGTTATTAGGGGTTGTTACCACAGGAAGGTGCTGAAGTCAGCACAGAGCAGAGGACTTGCAACCAAGAGCTTAAAATTTATTTTAAGAGTTGTTTGTCTGCTTGTTGGCAATTTTTGAAGCCTTAAATATATTTTAATTCAATATATTAAGAAATTATTATTTCAATATACAACCTGGCTGGGTACAGTGGCTCACATCTATAACCCTAGCACTTTAGGAGACTGAGGCAGGAGGATTACTTGAACCCAAGAGTTCAATACCAGCCTGGGCAACAAAGTTAGATCTCGTCTCTACAAAAAATAAAAAAATTAGTTGGGAGTGGTGGCACATACCTGTAGTCCTAGCTACTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAATTTGAGGTTGCAGTGAGCCATGATTGCACCACTGCACTCCAGCCAGCCATGATCAACAGGGGTTTATCCCACATGCATAAGGCTGGCTCAACATTCAAAAATCAATTAAGGTAGTCCATCACATCAACTGGTTGAGAAAAAACATTTTATTACATTTTACATAAAAATACATACACAGGGGTGAGTAGTGGCTTACACCTATAATACAACACTTCGGGAGGCCAAGAGGCAGGAGGATCGCTTGAGGTCAGGAGTTTGAGACAAGCCTGGGCAAAACAGTGGCAAAAAAATCTCTACAAAAAATAAATAAATAAATAAATAAAAATCAGCCGGGCATGGTGGCACATGCCAGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGGTTCCCCGCTTGAGCACAGAAGTTGTAGGCTGTGGTGAGCTAGGATCACACCTCTAAAGCCTGGGGCAGAGTGGGGCCCCATCTCTTCAAACAAACAAACAAACCATATACAGAAGAAAATAGAAGGACAGTGTTATCATCTTGCTGTGGGGAATATCTTTCTAAGTAAGTTCCTAGAAACAAAGCAAAATGAAAAGCAACTTAATGGGAGGATGTATTTGTAACATATAAAATGACACGGTGTTGATATCTATCATATACAAAAAGCTTCAACAAATCTACATGATAAACAACCGCACAGAAAATGCACAAAATATATGACAAGACAATTCAGAGAAAAGGAAATAGAAATGGTTAAGCATTTGAAGAGATGCACAACTTCACTAATCATCAAGAACACGCAAATTAAAACAAGATACCACTTTTTAAACATCTGGTTTTAAACGATTCCGAGTTGAATATTCAGTGCTGGGAATGGTCTGTGGAATCAGGCACTTTCCTACACTGTAAGTGGAAATGTAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG042639]][[Category:Transcripts]] |
Latest revision as of 01:40, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106634 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1995 nt |
Genomic location |
chr6-:2259533..2273651 |
Exon number |
7 |
Exons |
2259533..2260309,2263835..2263918,2269932..2270247,2271891..2271926,2271947..2272620,2273526..2273562,2273579..2273651 |
Genome context |
|
Sequence |
000001 CTGTCTTTTC TCTCCAGTAA CAGACCTGAC CTGTTGCAGG TGGGGAGTCT GCCACTGAGA ACAGCAAGAG GTATTTTTGC 000080
000081 AGTCTGGCTG CTACCCTTCC TCCCATCTTG CATGCACACT GTGTAAAAAC TTGTGGTCCA GCTCGTCCAT GATTCTGCAG 000160 000161 CTAGCATGGT CCCTCCTGCA AAGTATACCT GCTCTCTTTG AAACCGACAT TAAAAATCAG AAAATCCCAG CTTCTCTTAG 000240 000241 TAGCCATATT CAGCAGTTTC TCAGATTAAT GCAGTCTTTT TGAGGCCTAT TTTTTTTTTA AGTTTTCCAG AAGGAAGAAA 000320 000321 GGGCCAGGGC AGGGGTTTGT TACCGGAAAA AGGGTCTTAT CCCAGATGCC AAGAGTGAGT TCTTGAATCT CTCACGGGAA 000400 000401 AGAATTCAGG GTCTTTATTT ACTTAGCATC ATTAACTTAT TCCCTCAACC TTAAATATCT TGTGACCAGG ACTGCCCAAT 000480 000481 CCCCTGGGAC TATAACCCAG CAGGTTTGGC TTTATCCAGC CTCTATTCAG GATGGGGGCA CTCTGGTTAG GACGACTCTG 000560 000561 ACAGATTCAC TGCAGCACCA CCGAGGGCTC CTCCAGAGCT AAGAGCAGGA GAAGCAAGGC CACCCCAACA CACAGGAACC 000640 000641 ACCAGACTTG AATGGGCAAC AGCAAGATTC CAGCAGGAAC TATGAGATCC AAAACATCCA GTTATTAGGG GTTGTTACCA 000720 000721 CAGGAAGGTG CTGAAGTCAG CACAGAGCAG AGGACTTGCA ACCAAGAGCT TAAAATTTAT TTTAAGAGTT GTTTGTCTGC 000800 000801 TTGTTGGCAA TTTTTGAAGC CTTAAATATA TTTTAATTCA ATATATTAAG AAATTATTAT TTCAATATAC AACCTGGCTG 000880 000881 GGTACAGTGG CTCACATCTA TAACCCTAGC ACTTTAGGAG ACTGAGGCAG GAGGATTACT TGAACCCAAG AGTTCAATAC 000960 000961 CAGCCTGGGC AACAAAGTTA GATCTCGTCT CTACAAAAAA TAAAAAAATT AGTTGGGAGT GGTGGCACAT ACCTGTAGTC 001040 001041 CTAGCTACTT GGGAGGCTGA GGCAGGAGGA TCCCTTGAGC CCAGGAATTT GAGGTTGCAG TGAGCCATGA TTGCACCACT 001120 001121 GCACTCCAGC CAGCCATGAT CAACAGGGGT TTATCCCACA TGCATAAGGC TGGCTCAACA TTCAAAAATC AATTAAGGTA 001200 001201 GTCCATCACA TCAACTGGTT GAGAAAAAAC ATTTTATTAC ATTTTACATA AAAATACATA CACAGGGGTG AGTAGTGGCT 001280 001281 TACACCTATA ATACAACACT TCGGGAGGCC AAGAGGCAGG AGGATCGCTT GAGGTCAGGA GTTTGAGACA AGCCTGGGCA 001360 001361 AAACAGTGGC AAAAAAATCT CTACAAAAAA TAAATAAATA AATAAATAAA AATCAGCCGG GCATGGTGGC ACATGCCAGT 001440 001441 AGTCCCAGCT ACTCGGGAGG CTGAGGTGGG AGGGTTCCCC GCTTGAGCAC AGAAGTTGTA GGCTGTGGTG AGCTAGGATC 001520 001521 ACACCTCTAA AGCCTGGGGC AGAGTGGGGC CCCATCTCTT CAAACAAACA AACAAACCAT ATACAGAAGA AAATAGAAGG 001600 001601 ACAGTGTTAT CATCTTGCTG TGGGGAATAT CTTTCTAAGT AAGTTCCTAG AAACAAAGCA AAATGAAAAG CAACTTAATG 001680 001681 GGAGGATGTA TTTGTAACAT ATAAAATGAC ACGGTGTTGA TATCTATCAT ATACAAAAAG CTTCAACAAA TCTACATGAT 001760 001761 AAACAACCGC ACAGAAAATG CACAAAATAT ATGACAAGAC AATTCAGAGA AAAGGAAATA GAAATGGTTA AGCATTTGAA 001840 001841 GAGATGCACA ACTTCACTAA TCATCAAGAA CACGCAAATT AAAACAAGAT ACCACTTTTT AAACATCTGG TTTTAAACGA 001920 001921 TTCCGAGTTG AATATTCAGT GCTGGGAATG GTCTGTGGAA TCAGGCACTT TCCTACACTG TAAGTGGAAA TGTAA |
Predicted Small Protein
Name | NONHSAT106634_smProtein_1790:1915 |
Length | 42 |
Molecular weight | 5183.1318 |
Aromaticity | 0.121951219512 |
Instability index | 41.7634146341 |
Isoelectric point | 10.2920532227 |
Runs | 9 |
Runs residual | 0.0435433188688 |
Runs probability | 0.0221299731103 |
Amino acid sequence | MTRQFREKEIEMVKHLKRCTTSLIIKNTQIKTRYHFLNIWF |
Secondary structure | LLLHHHHHHHHHHHHHHHHLLLEEEELLEEEEEEEEELEEL |
PRMN | - |
PiMo | - |