Difference between revisions of "NONHSAT107136"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GATAATCCCAGCACCCTTTGCTGACTCCTTTCTTGGACACAGCCTGCTTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGACTCTCTTCATACAGATGCGCGTGACACAAACCTTAAAAGATGTTAAGTAACTTGCCCAAGGTCATGCAGTATCAGAACCAGGATTCAAAACAGAAACTCAGACCTGTCTCATGCCAATGCTTGGGACTCTCATCCACTACGGTTAGCCATCTCCCCCAGATGGAAAGAGTGGGAAACTTCTGCCAGATCTTTCTGATTCCATGGGGTAGATGTCTAGATCTGACAGGGCTCATCTCCAGTCGGATGCATGTCCACTGCCCCTTCCTCTCCCTGTCCTCTCAGCAAGAGTTGGGCCCAGTGGGCTTTTACAAAGTCAGGAGGATCATTTTAGCATTAGCCTTTATTCCCTGAACAAAACAGGCCCCTAGACAGTGAGGGCTTCTTATAAAGTTGCCTGACTCTCCTTTGCTTTGGGTTCCGGGATAGACTCAAAACCTCTTGAGTATAAAATTCTGTAACTTCCACTCTGTCTTCATTATGTGAGATGTTCAGAAAGTTCATTTTAAGAGGATCTTAATGCTGCCTATCAGATAAGAATGTTATGTATAAAATTAGATATTTTAATACAAGCAAGCCTGGACTTGTACAGACAAATTTCTCACCTCTTCCACAGAGGACAATAGACTTCTGAAAAAGGTGCTGTATTGTCAAAGGTACGTTTTATATTTGTAGCTAGTCTCATAGGCCTAGCTTTCGAAGACGGGTAAGGTAAAAGAACCAGAAAACAAAGTCGAAATGGTGTCCCCAGTGGCATGGTCTCGGCTCACGGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGACGCGTACCACCATGCCCGACCAGCCACTGGTGGAAGCAAGTTCCACTATGGGAAGCTCATCTTGCACTTCTATTATCTGGATGAGGTTGCTTTATTTTAAAAGTCTCTCTTAGGAATTCTGCCCTGCTTGGAATTTCTACGCCTTTTTCAAAATTTCTAATTCTTTTTCTATCAATCTCTGACCTCAGTCTTCTGGTTTTAAGTGCATTGCCCACTTTGACTGGTACCCACTCACTGGGAGGAGGCGTAAGCTGCCACGTGCCCAGCCTACAATTCCTTTTTTCAATCCATCTTCCTTTTTTCACATTTGACTATAAGCAGGACAGCCTTTGATATTTCCAGAGTCAATACCTGCTTTCCATTCTCCACAGCATCTAATATAAGTCATGGCTTCTCATCTGTCCTGCTTCCCCGCTTCGCGTTCACCACTGTGAGCACAACTCCAGCTGCACACGCAATGACAGCTCCTGTTGGGTTCTCTCCTCCTCATGCCTCCTCCCGTCCCTGGTTGCCACTCCTTTCCTCTGTCCCTCCACCCCTTGGGGTGGTAACAGCTTCCCACTGCTGCCAGACTCTGGGTGCCATGACACCCGTATATCCCGCTTCTCCCACACAAAGTGGGTGCCCTAAGATTCAATTCAATCCTGACACTAACAAAGTTAGCACGGATCCCATAGCCTAAGCGGCGGCTCTGTCCCACAAGACTGCCTCACCTCTGATGCCAGCCACAAGTTCCAGGTCTCCAGATGACTACCGCTTCTATTTGACTTGGCTACAAATTCAGGGGTTTCCGGCCCCACCTCAAAAAGTATAATATAATGTACTTTCATTATAAAGAATATAAAAGTATAATATACTTTTATTAAAAAGAATATAATATATATAAAGAACAGCCAAATCACGAGATGCATAAGAATACCCCCAAGCCTCATTTTTCAGAGTTTTTCTAGAAGTTTTATTACTTAGAGATGATTGATTAAATTATTGGCCATTGGTGACTGAACTCAGTCGCAGCCCCTCCCCTAAAGCTATCTGGGGGCCCACCAACAGTTACCTCATTAGCATAAACTCAGATGTAGTCAGAAGGGGCTTGTTATAGATAACAAAATACACTCCTATGGCTCAGGAAATCTCAAGAGTTTTAGGAGCTCTGTGCCAGGAACCGGGGGACAAAGACCAAAAGCAGGACGCTGGCAGACACAGCGGGCCGTCCTGCGTGCCCACACGTGGTGCCATCAGCGCAGCATTTATGGCCCCACATACTCCTGTATCCCCACCATTCTAGCCAGGTGCCTGGCTCACAGTGGTCGGCAATGGTTTTTAAAATGGATCAGTGAGTGTTTGCATCTCTTATTCTGGGCATAAATTCATTCAGCACCTTGTATGTCAGAGACTGCTGTAGGTGCTGAACACAGGGACCTGGGGAACAATGGTTTATTTGATCCTTAGCATTTTCCAGCTACTGGGAAGACTCCACCATTGGTGAGAACAGAAGCCCCACAGACTCTTCTCTCTGTCTGAGAGGTGAGGGAGTGGAGATTAGGGGTTCCAACTCCGCCTGGCTCAAATTCTGCCTCCACACTCCCCTGCACAAGTTACTTAACTCGGTTTCTACTTGCCTTAGTTTCTGCATTTATAAAATGAGGTGAGAATAATACTAATACCTCTTAGAATTGATTCAAGGAGCAAATGAACACTTACAGCCTGTCATCAATACTAATAAATATAAACTGCCATTACTTTTTCTCCTTTATAATATCCTTTATGGGGTAAAAATAAGAAGATATGTCT</dnaseq>| | sequence = <dnaseq>GATAATCCCAGCACCCTTTGCTGACTCCTTTCTTGGACACAGCCTGCTTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGACTCTCTTCATACAGATGCGCGTGACACAAACCTTAAAAGATGTTAAGTAACTTGCCCAAGGTCATGCAGTATCAGAACCAGGATTCAAAACAGAAACTCAGACCTGTCTCATGCCAATGCTTGGGACTCTCATCCACTACGGTTAGCCATCTCCCCCAGATGGAAAGAGTGGGAAACTTCTGCCAGATCTTTCTGATTCCATGGGGTAGATGTCTAGATCTGACAGGGCTCATCTCCAGTCGGATGCATGTCCACTGCCCCTTCCTCTCCCTGTCCTCTCAGCAAGAGTTGGGCCCAGTGGGCTTTTACAAAGTCAGGAGGATCATTTTAGCATTAGCCTTTATTCCCTGAACAAAACAGGCCCCTAGACAGTGAGGGCTTCTTATAAAGTTGCCTGACTCTCCTTTGCTTTGGGTTCCGGGATAGACTCAAAACCTCTTGAGTATAAAATTCTGTAACTTCCACTCTGTCTTCATTATGTGAGATGTTCAGAAAGTTCATTTTAAGAGGATCTTAATGCTGCCTATCAGATAAGAATGTTATGTATAAAATTAGATATTTTAATACAAGCAAGCCTGGACTTGTACAGACAAATTTCTCACCTCTTCCACAGAGGACAATAGACTTCTGAAAAAGGTGCTGTATTGTCAAAGGTACGTTTTATATTTGTAGCTAGTCTCATAGGCCTAGCTTTCGAAGACGGGTAAGGTAAAAGAACCAGAAAACAAAGTCGAAATGGTGTCCCCAGTGGCATGGTCTCGGCTCACGGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGACGCGTACCACCATGCCCGACCAGCCACTGGTGGAAGCAAGTTCCACTATGGGAAGCTCATCTTGCACTTCTATTATCTGGATGAGGTTGCTTTATTTTAAAAGTCTCTCTTAGGAATTCTGCCCTGCTTGGAATTTCTACGCCTTTTTCAAAATTTCTAATTCTTTTTCTATCAATCTCTGACCTCAGTCTTCTGGTTTTAAGTGCATTGCCCACTTTGACTGGTACCCACTCACTGGGAGGAGGCGTAAGCTGCCACGTGCCCAGCCTACAATTCCTTTTTTCAATCCATCTTCCTTTTTTCACATTTGACTATAAGCAGGACAGCCTTTGATATTTCCAGAGTCAATACCTGCTTTCCATTCTCCACAGCATCTAATATAAGTCATGGCTTCTCATCTGTCCTGCTTCCCCGCTTCGCGTTCACCACTGTGAGCACAACTCCAGCTGCACACGCAATGACAGCTCCTGTTGGGTTCTCTCCTCCTCATGCCTCCTCCCGTCCCTGGTTGCCACTCCTTTCCTCTGTCCCTCCACCCCTTGGGGTGGTAACAGCTTCCCACTGCTGCCAGACTCTGGGTGCCATGACACCCGTATATCCCGCTTCTCCCACACAAAGTGGGTGCCCTAAGATTCAATTCAATCCTGACACTAACAAAGTTAGCACGGATCCCATAGCCTAAGCGGCGGCTCTGTCCCACAAGACTGCCTCACCTCTGATGCCAGCCACAAGTTCCAGGTCTCCAGATGACTACCGCTTCTATTTGACTTGGCTACAAATTCAGGGGTTTCCGGCCCCACCTCAAAAAGTATAATATAATGTACTTTCATTATAAAGAATATAAAAGTATAATATACTTTTATTAAAAAGAATATAATATATATAAAGAACAGCCAAATCACGAGATGCATAAGAATACCCCCAAGCCTCATTTTTCAGAGTTTTTCTAGAAGTTTTATTACTTAGAGATGATTGATTAAATTATTGGCCATTGGTGACTGAACTCAGTCGCAGCCCCTCCCCTAAAGCTATCTGGGGGCCCACCAACAGTTACCTCATTAGCATAAACTCAGATGTAGTCAGAAGGGGCTTGTTATAGATAACAAAATACACTCCTATGGCTCAGGAAATCTCAAGAGTTTTAGGAGCTCTGTGCCAGGAACCGGGGGACAAAGACCAAAAGCAGGACGCTGGCAGACACAGCGGGCCGTCCTGCGTGCCCACACGTGGTGCCATCAGCGCAGCATTTATGGCCCCACATACTCCTGTATCCCCACCATTCTAGCCAGGTGCCTGGCTCACAGTGGTCGGCAATGGTTTTTAAAATGGATCAGTGAGTGTTTGCATCTCTTATTCTGGGCATAAATTCATTCAGCACCTTGTATGTCAGAGACTGCTGTAGGTGCTGAACACAGGGACCTGGGGAACAATGGTTTATTTGATCCTTAGCATTTTCCAGCTACTGGGAAGACTCCACCATTGGTGAGAACAGAAGCCCCACAGACTCTTCTCTCTGTCTGAGAGGTGAGGGAGTGGAGATTAGGGGTTCCAACTCCGCCTGGCTCAAATTCTGCCTCCACACTCCCCTGCACAAGTTACTTAACTCGGTTTCTACTTGCCTTAGTTTCTGCATTTATAAAATGAGGTGAGAATAATACTAATACCTCTTAGAATTGATTCAAGGAGCAAATGAACACTTACAGCCTGTCATCAATACTAATAAATATAAACTGCCATTACTTTTTCTCCTTTATAATATCCTTTATGGGGTAAAAATAAGAAGATATGTCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG042778]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:42, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT107136 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2728 nt |
| Genomic location |
chr6+:3469501..3483790 |
| Exon number |
16 |
| Exons |
3469501..3469906,3470089..3470279,3470532..3470685,3471190..3471285,3471373..3471480,3473140..3473223,3473343..3473427,3478072..3478126,3480083..3480161,3481643..3482125,3482206..3482315,3482415..3482510,3482592..3482762,3482855..3482934,3483008..3483161,3483415..3483790 |
| Genome context |
|
| Sequence |
000001 GATAATCCCA GCACCCTTTG CTGACTCCTT TCTTGGACAC AGCCTGCTTG CACCCAGGTG AAATAAACAG CCTTGTTGCT 000080
000081 CACACAAAGC CTGTTTGGTG GACTCTCTTC ATACAGATGC GCGTGACACA AACCTTAAAA GATGTTAAGT AACTTGCCCA 000160 000161 AGGTCATGCA GTATCAGAAC CAGGATTCAA AACAGAAACT CAGACCTGTC TCATGCCAAT GCTTGGGACT CTCATCCACT 000240 000241 ACGGTTAGCC ATCTCCCCCA GATGGAAAGA GTGGGAAACT TCTGCCAGAT CTTTCTGATT CCATGGGGTA GATGTCTAGA 000320 000321 TCTGACAGGG CTCATCTCCA GTCGGATGCA TGTCCACTGC CCCTTCCTCT CCCTGTCCTC TCAGCAAGAG TTGGGCCCAG 000400 000401 TGGGCTTTTA CAAAGTCAGG AGGATCATTT TAGCATTAGC CTTTATTCCC TGAACAAAAC AGGCCCCTAG ACAGTGAGGG 000480 000481 CTTCTTATAA AGTTGCCTGA CTCTCCTTTG CTTTGGGTTC CGGGATAGAC TCAAAACCTC TTGAGTATAA AATTCTGTAA 000560 000561 CTTCCACTCT GTCTTCATTA TGTGAGATGT TCAGAAAGTT CATTTTAAGA GGATCTTAAT GCTGCCTATC AGATAAGAAT 000640 000641 GTTATGTATA AAATTAGATA TTTTAATACA AGCAAGCCTG GACTTGTACA GACAAATTTC TCACCTCTTC CACAGAGGAC 000720 000721 AATAGACTTC TGAAAAAGGT GCTGTATTGT CAAAGGTACG TTTTATATTT GTAGCTAGTC TCATAGGCCT AGCTTTCGAA 000800 000801 GACGGGTAAG GTAAAAGAAC CAGAAAACAA AGTCGAAATG GTGTCCCCAG TGGCATGGTC TCGGCTCACG GCAACCTCTG 000880 000881 CCTCCCAGGT TCAAGCGATT CTCCTGCCTC AGCCTCCCGA GTAGCTGGGA TTACAGACGC GTACCACCAT GCCCGACCAG 000960 000961 CCACTGGTGG AAGCAAGTTC CACTATGGGA AGCTCATCTT GCACTTCTAT TATCTGGATG AGGTTGCTTT ATTTTAAAAG 001040 001041 TCTCTCTTAG GAATTCTGCC CTGCTTGGAA TTTCTACGCC TTTTTCAAAA TTTCTAATTC TTTTTCTATC AATCTCTGAC 001120 001121 CTCAGTCTTC TGGTTTTAAG TGCATTGCCC ACTTTGACTG GTACCCACTC ACTGGGAGGA GGCGTAAGCT GCCACGTGCC 001200 001201 CAGCCTACAA TTCCTTTTTT CAATCCATCT TCCTTTTTTC ACATTTGACT ATAAGCAGGA CAGCCTTTGA TATTTCCAGA 001280 001281 GTCAATACCT GCTTTCCATT CTCCACAGCA TCTAATATAA GTCATGGCTT CTCATCTGTC CTGCTTCCCC GCTTCGCGTT 001360 001361 CACCACTGTG AGCACAACTC CAGCTGCACA CGCAATGACA GCTCCTGTTG GGTTCTCTCC TCCTCATGCC TCCTCCCGTC 001440 001441 CCTGGTTGCC ACTCCTTTCC TCTGTCCCTC CACCCCTTGG GGTGGTAACA GCTTCCCACT GCTGCCAGAC TCTGGGTGCC 001520 001521 ATGACACCCG TATATCCCGC TTCTCCCACA CAAAGTGGGT GCCCTAAGAT TCAATTCAAT CCTGACACTA ACAAAGTTAG 001600 001601 CACGGATCCC ATAGCCTAAG CGGCGGCTCT GTCCCACAAG ACTGCCTCAC CTCTGATGCC AGCCACAAGT TCCAGGTCTC 001680 001681 CAGATGACTA CCGCTTCTAT TTGACTTGGC TACAAATTCA GGGGTTTCCG GCCCCACCTC AAAAAGTATA ATATAATGTA 001760 001761 CTTTCATTAT AAAGAATATA AAAGTATAAT ATACTTTTAT TAAAAAGAAT ATAATATATA TAAAGAACAG CCAAATCACG 001840 001841 AGATGCATAA GAATACCCCC AAGCCTCATT TTTCAGAGTT TTTCTAGAAG TTTTATTACT TAGAGATGAT TGATTAAATT 001920 001921 ATTGGCCATT GGTGACTGAA CTCAGTCGCA GCCCCTCCCC TAAAGCTATC TGGGGGCCCA CCAACAGTTA CCTCATTAGC 002000 002001 ATAAACTCAG ATGTAGTCAG AAGGGGCTTG TTATAGATAA CAAAATACAC TCCTATGGCT CAGGAAATCT CAAGAGTTTT 002080 002081 AGGAGCTCTG TGCCAGGAAC CGGGGGACAA AGACCAAAAG CAGGACGCTG GCAGACACAG CGGGCCGTCC TGCGTGCCCA 002160 002161 CACGTGGTGC CATCAGCGCA GCATTTATGG CCCCACATAC TCCTGTATCC CCACCATTCT AGCCAGGTGC CTGGCTCACA 002240 002241 GTGGTCGGCA ATGGTTTTTA AAATGGATCA GTGAGTGTTT GCATCTCTTA TTCTGGGCAT AAATTCATTC AGCACCTTGT 002320 002321 ATGTCAGAGA CTGCTGTAGG TGCTGAACAC AGGGACCTGG GGAACAATGG TTTATTTGAT CCTTAGCATT TTCCAGCTAC 002400 002401 TGGGAAGACT CCACCATTGG TGAGAACAGA AGCCCCACAG ACTCTTCTCT CTGTCTGAGA GGTGAGGGAG TGGAGATTAG 002480 002481 GGGTTCCAAC TCCGCCTGGC TCAAATTCTG CCTCCACACT CCCCTGCACA AGTTACTTAA CTCGGTTTCT ACTTGCCTTA 002560 002561 GTTTCTGCAT TTATAAAATG AGGTGAGAAT AATACTAATA CCTCTTAGAA TTGATTCAAG GAGCAAATGA ACACTTACAG 002640 002641 CCTGTCATCA ATACTAATAA ATATAAACTG CCATTACTTT TTCTCCTTTA TAATATCCTT TATGGGGTAA AAATAAGAAG 002720 002721 ATATGTCT |
Predicted Small Protein
| Name | NONHSAT107136_smProtein_1394:1618 |
| Length | 75 |
| Molecular weight | 7655.7408 |
| Aromaticity | 0.0540540540541 |
| Instability index | 54.2013513514 |
| Isoelectric point | 7.76092529297 |
| Runs | 7 |
| Runs residual | 0.0480553724456 |
| Runs probability | 0.0297650591769 |
| Amino acid sequence | MTAPVGFSPPHASSRPWLPLLSSVPPPLGVVTASHCCQTLGAMTPVYPASPTQSGCPKIQ FNPDTNKVSTDPIA |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEELHHHHLLLLLLLLLLLLLLLLLLLLEE ELLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
