Difference between revisions of "NONHSAT107641"

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sequence = <dnaseq>tgggggtggaactcatgatggaattggagcctttacaagggaatgaagagacaagagctctctttatgccacgtgaggatacagcaaggccccaatctgcaagccaggaagagtcgtcacgagaaccagaccatgcaggaactctgatcgtggacatttcaacctccagaactgtgatccaAAATGCATATGTATCTTTGGAAGAAACTCTGAAGTAAAGGCCGGAATATTCTTTGTTTAAAACATTAAAAACAAAACAGACCAAAGCATCAAGCAAGAAGTTTCCTGGCAATAAACTAAGCACAGCATTATTTTTTAAGGAACACAAATTAAGTGTTCAACCTGTGGCAAATTTGTACTTTCTCCCTGAATTATGTTGTTATCAAAGAAAAAAATTGGGAAGCATGGCAAAATATCATCAAAACTGaaactagaattaaacaaaactaaattaaaatgaaataaaatgaTGTCCATTCTTAATTCATCCTCACAACTGGGCCACTAGTTTTATGCATCTTGGCAGCCAATATTTTTGTCTCTAGGGCATAAATTATGCATCAGGTACCTCTGAAACTCAGAGACCAAGGAAAAAGGAGGTAATTTGGAAGGTGAAATAAATGTAAACATTCTGAAGAAAGAATCAAATCTGTACTTCAGGGTCAAAGATGAAATTCAAAAGGGGTTGACAATGCATAGAAAAAAGTGCTGAATTTAAAGTTGGTTTTATTATTATCATTGTTATTTGAACCAATAATTAAATCCAGTAAGTCTAGAGCAATGATCATAATTCTGTACTGTTGTTTTTCTATTTTAGAATCCAGTGTACTGTTTCCAAGAGCTTGGCaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaGGAGCTTGACTCTAAATCTCTAAATCTTGGAGTCTGGATGCACTATTCATGTGATAGGCTAAAATAACTACTAATACCTTATGTTCAAACAGCACTTTATGAAGTGATTACACATAAAAGATCTTTTTTGATATAACTGTTATACGGCATATCTTCCATTTTATAGACAGGGTGAGTTGTTTGATGCGTAAGATGAGCTGAAATAGGAAAAGTGACAGAAAATTTACAGACCTATGGAATAATATTCCACAATGGGGTATTCTTTATAATTATCTGGGCTGAATAGCACCATCCAAAGTTCTTAAATCATCAACAATGCCATTTTTACTGTAGAGGAGAAGAGTTATGATCCTTTGACTCTTTAAATTTTCTTCCTTGACAAAAGTGATCTACCTTTCTAGCCAACCTGTCTCAATGATCCATAATGTTGCTACCCTGGTGCCAGATGGATATGATAGAAGGCTCCTAAAAGGCTCTTGGTTTGAGGAAAGTGTTGCTTACATACAACAGGAATCTTGTGGGATTTAAGAAGTGGGGAGATGTGGAAGTGTAGCCACTCTCTTTTTCATTCTACCAGTTGCTATTTCAATCTTTTTCAAGAGAAGGCTAAAATTTTAAGAGAAGGCTAAAATTTTATGTAACTATCAAGGAGAGGAACAAAATTATGGCTTTTAATGCTCCCTTTGGGAAGGTCAAGAATTTGGAGCTTTTATATTTCTCTTTCTTCTTAATTTAGGTCTTGATCAATATAACTGGAGCCTGTGGGGTATGTGTGTATAAAATAAAG</dnaseq>|
 
sequence = <dnaseq>tgggggtggaactcatgatggaattggagcctttacaagggaatgaagagacaagagctctctttatgccacgtgaggatacagcaaggccccaatctgcaagccaggaagagtcgtcacgagaaccagaccatgcaggaactctgatcgtggacatttcaacctccagaactgtgatccaAAATGCATATGTATCTTTGGAAGAAACTCTGAAGTAAAGGCCGGAATATTCTTTGTTTAAAACATTAAAAACAAAACAGACCAAAGCATCAAGCAAGAAGTTTCCTGGCAATAAACTAAGCACAGCATTATTTTTTAAGGAACACAAATTAAGTGTTCAACCTGTGGCAAATTTGTACTTTCTCCCTGAATTATGTTGTTATCAAAGAAAAAAATTGGGAAGCATGGCAAAATATCATCAAAACTGaaactagaattaaacaaaactaaattaaaatgaaataaaatgaTGTCCATTCTTAATTCATCCTCACAACTGGGCCACTAGTTTTATGCATCTTGGCAGCCAATATTTTTGTCTCTAGGGCATAAATTATGCATCAGGTACCTCTGAAACTCAGAGACCAAGGAAAAAGGAGGTAATTTGGAAGGTGAAATAAATGTAAACATTCTGAAGAAAGAATCAAATCTGTACTTCAGGGTCAAAGATGAAATTCAAAAGGGGTTGACAATGCATAGAAAAAAGTGCTGAATTTAAAGTTGGTTTTATTATTATCATTGTTATTTGAACCAATAATTAAATCCAGTAAGTCTAGAGCAATGATCATAATTCTGTACTGTTGTTTTTCTATTTTAGAATCCAGTGTACTGTTTCCAAGAGCTTGGCaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaGGAGCTTGACTCTAAATCTCTAAATCTTGGAGTCTGGATGCACTATTCATGTGATAGGCTAAAATAACTACTAATACCTTATGTTCAAACAGCACTTTATGAAGTGATTACACATAAAAGATCTTTTTTGATATAACTGTTATACGGCATATCTTCCATTTTATAGACAGGGTGAGTTGTTTGATGCGTAAGATGAGCTGAAATAGGAAAAGTGACAGAAAATTTACAGACCTATGGAATAATATTCCACAATGGGGTATTCTTTATAATTATCTGGGCTGAATAGCACCATCCAAAGTTCTTAAATCATCAACAATGCCATTTTTACTGTAGAGGAGAAGAGTTATGATCCTTTGACTCTTTAAATTTTCTTCCTTGACAAAAGTGATCTACCTTTCTAGCCAACCTGTCTCAATGATCCATAATGTTGCTACCCTGGTGCCAGATGGATATGATAGAAGGCTCCTAAAAGGCTCTTGGTTTGAGGAAAGTGTTGCTTACATACAACAGGAATCTTGTGGGATTTAAGAAGTGGGGAGATGTGGAAGTGTAGCCACTCTCTTTTTCATTCTACCAGTTGCTATTTCAATCTTTTTCAAGAGAAGGCTAAAATTTTAAGAGAAGGCTAAAATTTTATGTAACTATCAAGGAGAGGAACAAAATTATGGCTTTTAATGCTCCCTTTGGGAAGGTCAAGAATTTGGAGCTTTTATATTTCTCTTTCTTCTTAATTTAGGTCTTGATCAATATAACTGGAGCCTGTGGGGTATGTGTGTATAAAATAAAG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG042970]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG042970]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 01:44, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT107641

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1667 nt

Genomic location

chr6+:8652443..8657660

Exon number

3

Exons

8652443..8652623,8653778..8655017,8657415..8657660

Genome context

Sequence
000001 tgggggtgga actcatgatg gaattggagc ctttacaagg gaatgaagag acaagagctc tctttatgcc acgtgaggat 000080
000081 acagcaaggc cccaatctgc aagccaggaa gagtcgtcac gagaaccaga ccatgcagga actctgatcg tggacatttc 000160
000161 aacctccaga actgtgatcc aAAATGCATA TGTATCTTTG GAAGAAACTC TGAAGTAAAG GCCGGAATAT TCTTTGTTTA 000240
000241 AAACATTAAA AACAAAACAG ACCAAAGCAT CAAGCAAGAA GTTTCCTGGC AATAAACTAA GCACAGCATT ATTTTTTAAG 000320
000321 GAACACAAAT TAAGTGTTCA ACCTGTGGCA AATTTGTACT TTCTCCCTGA ATTATGTTGT TATCAAAGAA AAAAATTGGG 000400
000401 AAGCATGGCA AAATATCATC AAAACTGaaa ctagaattaa acaaaactaa attaaaatga aataaaatga TGTCCATTCT 000480
000481 TAATTCATCC TCACAACTGG GCCACTAGTT TTATGCATCT TGGCAGCCAA TATTTTTGTC TCTAGGGCAT AAATTATGCA 000560
000561 TCAGGTACCT CTGAAACTCA GAGACCAAGG AAAAAGGAGG TAATTTGGAA GGTGAAATAA ATGTAAACAT TCTGAAGAAA 000640
000641 GAATCAAATC TGTACTTCAG GGTCAAAGAT GAAATTCAAA AGGGGTTGAC AATGCATAGA AAAAAGTGCT GAATTTAAAG 000720
000721 TTGGTTTTAT TATTATCATT GTTATTTGAA CCAATAATTA AATCCAGTAA GTCTAGAGCA ATGATCATAA TTCTGTACTG 000800
000801 TTGTTTTTCT ATTTTAGAAT CCAGTGTACT GTTTCCAAGA GCTTGGCaaa aaaaaaaaaa aaaaaaaaaa aaaagaaaaa 000880
000881 GGAGCTTGAC TCTAAATCTC TAAATCTTGG AGTCTGGATG CACTATTCAT GTGATAGGCT AAAATAACTA CTAATACCTT 000960
000961 ATGTTCAAAC AGCACTTTAT GAAGTGATTA CACATAAAAG ATCTTTTTTG ATATAACTGT TATACGGCAT ATCTTCCATT 001040
001041 TTATAGACAG GGTGAGTTGT TTGATGCGTA AGATGAGCTG AAATAGGAAA AGTGACAGAA AATTTACAGA CCTATGGAAT 001120
001121 AATATTCCAC AATGGGGTAT TCTTTATAAT TATCTGGGCT GAATAGCACC ATCCAAAGTT CTTAAATCAT CAACAATGCC 001200
001201 ATTTTTACTG TAGAGGAGAA GAGTTATGAT CCTTTGACTC TTTAAATTTT CTTCCTTGAC AAAAGTGATC TACCTTTCTA 001280
001281 GCCAACCTGT CTCAATGATC CATAATGTTG CTACCCTGGT GCCAGATGGA TATGATAGAA GGCTCCTAAA AGGCTCTTGG 001360
001361 TTTGAGGAAA GTGTTGCTTA CATACAACAG GAATCTTGTG GGATTTAAGA AGTGGGGAGA TGTGGAAGTG TAGCCACTCT 001440
001441 CTTTTTCATT CTACCAGTTG CTATTTCAAT CTTTTTCAAG AGAAGGCTAA AATTTTAAGA GAAGGCTAAA ATTTTATGTA 001520
001521 ACTATCAAGG AGAGGAACAA AATTATGGCT TTTAATGCTC CCTTTGGGAA GGTCAAGAAT TTGGAGCTTT TATATTTCTC 001600
001601 TTTCTTCTTA ATTTAGGTCT TGATCAATAT AACTGGAGCC TGTGGGGTAT GTGTGTATAA AATAAAG
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Predicted Small Protein

Name NONHSAT107641_smProtein_14:217
Length 68
Molecular weight 7535.2434
Aromaticity 0.0298507462687
Instability index 61.8149253731
Isoelectric point 4.44122314453
Runs 9
Runs residual 0.00898648120653
Runs probability 0.0457712614576
Amino acid sequence MMELEPLQGNEETRALFMPREDTARPQSASQEESSREPDHAGTLIVDISTSRTVIQNAYV
SLEETLK
Secondary structure LLLLLLLLLLHHHHHEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLEEEEEEE
EHHHLLL
PRMN -
PiMo -