Difference between revisions of "NONHSAT107727"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGGGTGTGTGCCGCGCGCGGGAAACGCCGTTCTCCGCTCCAGGCGTCGGCGGGCGGTGGCGAGAGCAGATTTTATAGGTTCAGAAAGTGTGTCTCAGAGGAGTTAGAGAAGACCGATTAATAGATGACAGTGCTAAAGCCTGGATCTCCTGAATCCTGGATGAAAGTGTCCTAAGTTAGATTCCTGGGAAGAAAATTCTGAGACACATTCTGCAGGATGATTATTAGGGCTCATCCTTGGTTTCAACACCCATAGAAGGAAGGGGGAAGAAGAAATCGAACAGAGAGACAGAAGTCGAGATGCATTTCAGGCCAGGACTCTTGGCTGAACCCACAGGAGCTCTGGAGCTAGAATGGCCCTTCAGAGTTGTCCTGAGTTGGTCTGAGATGGCCAGTTCTTTATATTCCTGCATGGGATAGTCACTGGATGTCCACCCCAGGAAGGGGTGTGGCCAAGACAGTCCCTAAAATGCCCGCCAGCACTCCCTACACCTGGAGCGACAAGACCAACATCACAGGGGGAATGCACTGGGTGATGGATCACAGCGTTCATCCCAGAAGATGAGGATACAGAATTGGCTGACAACTACGTTCTAAATGTCAGTGTTCTCCAAAATTCATATGTTGAAACTTAATTCCCAATGTGATGGCATTAGGAAGTGGGGCCTTTGGGGGAGGGACTATAGGTCATGAGGGTGTAACCCTCATCAATGGGATTAGTGTCCAGAGAGCTGCCTTGCCCTTCCACCATGTGAGGACATAGTGAGAAGGTGCCATCTATGAACTAGGAAGTGGGCGCTTACCACCAGACACCCACTCTTCTGGCAACTTGATCTTGAATTTCCCAGCCTCCAGAACTCTGAGAAATCAATTTCTGTTAATTATAAGCTACCCAGTCGATAGCATTTTGTTAAAGCTGCTGGAACTAAACTAAGACACTGACGCTTTCTGCGACAAAAAGATAGAGTGAGTCTCTATAGCATACCATGTAACAGATGTTTTTGGAAAAATAACCTCATTTCATATGTTTCCTCAAGATAAAAAGAATGTCATAACAACAAATGAGAAAATAGTTGCTTTAGAAATATTGCACCCTATGGAGAGAGTATTTTGGATTTTGGTTTTTTGTTTTGTTTTTTAACTTTTGTTTTAGGTTTGGGGGTACATATGCAGGTTTGTTATATAGGTAAACTCATGTCACAGGGGTTTGTTGTACAGATAATTTCCTCACCCAGGTACTAAGCCTAGTACCCAATAGTTGCTTTTTCTCCTCCTCTCTCTCCTCCCACCCTCCACCCTCAAATAGGCCCCAGTGTATGTTGTTCTCTTCATTATGTTCATGAAGTTGAGAGAGTGTTTTGAAAAAGAATGTTGGAAAGCATTTCCACTGTTAGATGATTTTAAGTCAAAAAGTTATACAACAGTGTGACCTATTTGCACACAAGCATGGACACAGAATTGTGTCATATGTTTAAAACTTTTCTAGATCCTTTTGTGGTTCATAAGCTTGATGATTGAGTTTTCGCGTCCACATGTGAGATGTGCCTCCCTTGAGCCTTGTCATTGGCACATTACCTGCCTGATGTGAACAATAAAAATAAAAAATAAAAATTTGC</dnaseq>| | sequence = <dnaseq>AGGGTGTGTGCCGCGCGCGGGAAACGCCGTTCTCCGCTCCAGGCGTCGGCGGGCGGTGGCGAGAGCAGATTTTATAGGTTCAGAAAGTGTGTCTCAGAGGAGTTAGAGAAGACCGATTAATAGATGACAGTGCTAAAGCCTGGATCTCCTGAATCCTGGATGAAAGTGTCCTAAGTTAGATTCCTGGGAAGAAAATTCTGAGACACATTCTGCAGGATGATTATTAGGGCTCATCCTTGGTTTCAACACCCATAGAAGGAAGGGGGAAGAAGAAATCGAACAGAGAGACAGAAGTCGAGATGCATTTCAGGCCAGGACTCTTGGCTGAACCCACAGGAGCTCTGGAGCTAGAATGGCCCTTCAGAGTTGTCCTGAGTTGGTCTGAGATGGCCAGTTCTTTATATTCCTGCATGGGATAGTCACTGGATGTCCACCCCAGGAAGGGGTGTGGCCAAGACAGTCCCTAAAATGCCCGCCAGCACTCCCTACACCTGGAGCGACAAGACCAACATCACAGGGGGAATGCACTGGGTGATGGATCACAGCGTTCATCCCAGAAGATGAGGATACAGAATTGGCTGACAACTACGTTCTAAATGTCAGTGTTCTCCAAAATTCATATGTTGAAACTTAATTCCCAATGTGATGGCATTAGGAAGTGGGGCCTTTGGGGGAGGGACTATAGGTCATGAGGGTGTAACCCTCATCAATGGGATTAGTGTCCAGAGAGCTGCCTTGCCCTTCCACCATGTGAGGACATAGTGAGAAGGTGCCATCTATGAACTAGGAAGTGGGCGCTTACCACCAGACACCCACTCTTCTGGCAACTTGATCTTGAATTTCCCAGCCTCCAGAACTCTGAGAAATCAATTTCTGTTAATTATAAGCTACCCAGTCGATAGCATTTTGTTAAAGCTGCTGGAACTAAACTAAGACACTGACGCTTTCTGCGACAAAAAGATAGAGTGAGTCTCTATAGCATACCATGTAACAGATGTTTTTGGAAAAATAACCTCATTTCATATGTTTCCTCAAGATAAAAAGAATGTCATAACAACAAATGAGAAAATAGTTGCTTTAGAAATATTGCACCCTATGGAGAGAGTATTTTGGATTTTGGTTTTTTGTTTTGTTTTTTAACTTTTGTTTTAGGTTTGGGGGTACATATGCAGGTTTGTTATATAGGTAAACTCATGTCACAGGGGTTTGTTGTACAGATAATTTCCTCACCCAGGTACTAAGCCTAGTACCCAATAGTTGCTTTTTCTCCTCCTCTCTCTCCTCCCACCCTCCACCCTCAAATAGGCCCCAGTGTATGTTGTTCTCTTCATTATGTTCATGAAGTTGAGAGAGTGTTTTGAAAAAGAATGTTGGAAAGCATTTCCACTGTTAGATGATTTTAAGTCAAAAAGTTATACAACAGTGTGACCTATTTGCACACAAGCATGGACACAGAATTGTGTCATATGTTTAAAACTTTTCTAGATCCTTTTGTGGTTCATAAGCTTGATGATTGAGTTTTCGCGTCCACATGTGAGATGTGCCTCCCTTGAGCCTTGTCATTGGCACATTACCTGCCTGATGTGAACAATAAAAATAAAAAATAAAAATTTGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG043010]][[Category:Transcripts]] |
Latest revision as of 01:45, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT107727 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1615 nt |
| Genomic location |
chr6+:11043991..11079377 |
| Exon number |
3 |
| Exons |
11043991..11044058,11048142..11048232,11077922..11079377 |
| Genome context |
|
| Sequence |
000001 AGGGTGTGTG CCGCGCGCGG GAAACGCCGT TCTCCGCTCC AGGCGTCGGC GGGCGGTGGC GAGAGCAGAT TTTATAGGTT 000080
000081 CAGAAAGTGT GTCTCAGAGG AGTTAGAGAA GACCGATTAA TAGATGACAG TGCTAAAGCC TGGATCTCCT GAATCCTGGA 000160 000161 TGAAAGTGTC CTAAGTTAGA TTCCTGGGAA GAAAATTCTG AGACACATTC TGCAGGATGA TTATTAGGGC TCATCCTTGG 000240 000241 TTTCAACACC CATAGAAGGA AGGGGGAAGA AGAAATCGAA CAGAGAGACA GAAGTCGAGA TGCATTTCAG GCCAGGACTC 000320 000321 TTGGCTGAAC CCACAGGAGC TCTGGAGCTA GAATGGCCCT TCAGAGTTGT CCTGAGTTGG TCTGAGATGG CCAGTTCTTT 000400 000401 ATATTCCTGC ATGGGATAGT CACTGGATGT CCACCCCAGG AAGGGGTGTG GCCAAGACAG TCCCTAAAAT GCCCGCCAGC 000480 000481 ACTCCCTACA CCTGGAGCGA CAAGACCAAC ATCACAGGGG GAATGCACTG GGTGATGGAT CACAGCGTTC ATCCCAGAAG 000560 000561 ATGAGGATAC AGAATTGGCT GACAACTACG TTCTAAATGT CAGTGTTCTC CAAAATTCAT ATGTTGAAAC TTAATTCCCA 000640 000641 ATGTGATGGC ATTAGGAAGT GGGGCCTTTG GGGGAGGGAC TATAGGTCAT GAGGGTGTAA CCCTCATCAA TGGGATTAGT 000720 000721 GTCCAGAGAG CTGCCTTGCC CTTCCACCAT GTGAGGACAT AGTGAGAAGG TGCCATCTAT GAACTAGGAA GTGGGCGCTT 000800 000801 ACCACCAGAC ACCCACTCTT CTGGCAACTT GATCTTGAAT TTCCCAGCCT CCAGAACTCT GAGAAATCAA TTTCTGTTAA 000880 000881 TTATAAGCTA CCCAGTCGAT AGCATTTTGT TAAAGCTGCT GGAACTAAAC TAAGACACTG ACGCTTTCTG CGACAAAAAG 000960 000961 ATAGAGTGAG TCTCTATAGC ATACCATGTA ACAGATGTTT TTGGAAAAAT AACCTCATTT CATATGTTTC CTCAAGATAA 001040 001041 AAAGAATGTC ATAACAACAA ATGAGAAAAT AGTTGCTTTA GAAATATTGC ACCCTATGGA GAGAGTATTT TGGATTTTGG 001120 001121 TTTTTTGTTT TGTTTTTTAA CTTTTGTTTT AGGTTTGGGG GTACATATGC AGGTTTGTTA TATAGGTAAA CTCATGTCAC 001200 001201 AGGGGTTTGT TGTACAGATA ATTTCCTCAC CCAGGTACTA AGCCTAGTAC CCAATAGTTG CTTTTTCTCC TCCTCTCTCT 001280 001281 CCTCCCACCC TCCACCCTCA AATAGGCCCC AGTGTATGTT GTTCTCTTCA TTATGTTCAT GAAGTTGAGA GAGTGTTTTG 001360 001361 AAAAAGAATG TTGGAAAGCA TTTCCACTGT TAGATGATTT TAAGTCAAAA AGTTATACAA CAGTGTGACC TATTTGCACA 001440 001441 CAAGCATGGA CACAGAATTG TGTCATATGT TTAAAACTTT TCTAGATCCT TTTGTGGTTC ATAAGCTTGA TGATTGAGTT 001520 001521 TTCGCGTCCA CATGTGAGAT GTGCCTCCCT TGAGCCTTGT CATTGGCACA TTACCTGCCT GATGTGAACA ATAAAAATAA 001600 001601 AAAATAAAAA TTTGC |
Predicted Small Protein
| Name | NONHSAT107727_smProtein_299:418 |
| Length | 40 |
| Molecular weight | 4400.0847 |
| Aromaticity | 0.128205128205 |
| Instability index | 58.1384615385 |
| Isoelectric point | 4.90264892578 |
| Runs | 7 |
| Runs residual | 0.0107466063348 |
| Runs probability | 0.028982764277 |
| Amino acid sequence | MHFRPGLLAEPTGALELEWPFRVVLSWSEMASSLYSCMG |
| Secondary structure | LLLLLLLLLLLLLLEEELLLEEEEELHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
