Difference between revisions of "NONHSAT112438"
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sequence = <dnaseq>TACCCACCATTTGTATACAGGAGTACAACAGCACAGTGTGGTTGAGACTACAGGGCAAACATTGTGCTAAGTTAGATTTCAAAGAATTTTTGATCAGGATGCAAACCAAGAGACCGTTTTTGAAAACATTGCCAAACCAGTTGCTGGGAGTCCTACAGGAACTGGATCAACCCAGCAAGTCTGCAGTTCCCAAGGTCTTCAGGATGAGGCACCAGTGCAGTTATGTAGTATTTTTCCGCCAAAGTGATATGTTTTAAACTGACAGATTTTCATTGTTCCATTTGATGCTAATATTTTCTTCTAACAATAGCTTTTCTCTTAATGATGCCTTTTACTTATGTAAACATGTTTTTCTCATAAAAACTTAAATAGTCATTTTGCTTTTTATTAATGGAATCACCACCAAGCAATCTTTATAAGATTGTCATTTATATGGCTACATTAAATAACACAGTTCTGTTTTCATACATAGAAATTCTAATAATATAAAAAATTATGTAGCCAAAAATATTGAAACATTTATACATGAAAAGCTTgagtcacagaaacctagggttgaaaggaacttcaaggtctttagccttcctccaaGAAATATAACTTACAAAAGTGAGCAGAAGTTTTTATATATTCACTTGCCCTTAGGCTCTTAATTTAACTCCACACTGAGCATTTTCGACACTGACTTGTTTTGAGAAAGGTTATCATAAGGGAGCTTTTCCGTTTCTGCTACCTCAAATGCGTGTATCTTTTTTCTTAGCCTTTCTTCCTTTACTCTTCTCTCAGAAATATTTCTCTTTACTATCCTTACTACATGGAGCTTTGTTTCCAGCTAAGTTTGCTTTTTTCAGAAGTTTATCTCCTAATTCAGTTCCAACCagggttgccagatttagaaaatgaaaaatataggactcccagttaaatgtgaatttcagataaatggtgaacacgtttttagtataaatatgtcccaaatgttgcatgggtcatacccataaaattattcattgtttctctgaaattcaaatttaactgtattttattggacaaccctaTGTAAAACCCTTATGCCTGCAACCTTGTCTGTAAATTTCCTTTGCTGAAGTTCACATCTCCATCAGTGCACTGAACTACGCAGAGGACACTCTTCTGTGGCTGCATTTTCCTCTGCCTGCAGCCATTTCCATCTGGATCCTGCTCTGTTCTCCCCTTGCTGGTTTCTCAGCTTACCTGCAGTCCCCCATTGGCCACTCTTCTTGAGCTGTCTCCTGTTGGTGGCACAGCAGTGTTTATTATGCTTGACACTCCTAGGTTACCTTGAGTCCTCCTTTACTCTTGTCCTGGACAATAACAATTCCTGTTCATTCTTCTTCCGCAGGGGGATCTTTCCCTCCTTCCCTCCTCATCTTTACTTCCCCTTCCCCTTCTCCCTCCTGTCTGTCCCTGCTTGTCTGTTCCCTACACTGCCCTCATTCAGGTTTCTGCCCACCCACTTGCCCACCCAGCCTCCTGCTCTAGACACTCCCTGTCCAGGCCATCTTGCACTGCCTGGTTAATCATTCAGAAATATTGTACCAATTCTACTCTTTCCCTCCTTCAGTGACTTACTATTGTCTGCAGAATGAAGTATAAGTTCCTTATTCAAGGACTCATATGCAGGAACTTTCCAGAATTGTCCTCTTCCTATTTCCCTAGTGCCATTGACATCGTTACTTTGCATcagtgcctaccaccctttccgatactctcactctttcactataatatattattgaaaactcccttcgggaagttttaaattatgtaatcatttggcatacagataaaaggaagcattattttagtttatatcactgtattagtaaatgttacattatatagtttatcctaataaaatgtaataatattcacattatataaatagcaagaaatgttttgacttttccctatttagcaaatgacacacactttcttgtatttgaattaattagataattaaaaatgtgatttttaaataaaatttaaaatggca</dnaseq>| | sequence = <dnaseq>TACCCACCATTTGTATACAGGAGTACAACAGCACAGTGTGGTTGAGACTACAGGGCAAACATTGTGCTAAGTTAGATTTCAAAGAATTTTTGATCAGGATGCAAACCAAGAGACCGTTTTTGAAAACATTGCCAAACCAGTTGCTGGGAGTCCTACAGGAACTGGATCAACCCAGCAAGTCTGCAGTTCCCAAGGTCTTCAGGATGAGGCACCAGTGCAGTTATGTAGTATTTTTCCGCCAAAGTGATATGTTTTAAACTGACAGATTTTCATTGTTCCATTTGATGCTAATATTTTCTTCTAACAATAGCTTTTCTCTTAATGATGCCTTTTACTTATGTAAACATGTTTTTCTCATAAAAACTTAAATAGTCATTTTGCTTTTTATTAATGGAATCACCACCAAGCAATCTTTATAAGATTGTCATTTATATGGCTACATTAAATAACACAGTTCTGTTTTCATACATAGAAATTCTAATAATATAAAAAATTATGTAGCCAAAAATATTGAAACATTTATACATGAAAAGCTTgagtcacagaaacctagggttgaaaggaacttcaaggtctttagccttcctccaaGAAATATAACTTACAAAAGTGAGCAGAAGTTTTTATATATTCACTTGCCCTTAGGCTCTTAATTTAACTCCACACTGAGCATTTTCGACACTGACTTGTTTTGAGAAAGGTTATCATAAGGGAGCTTTTCCGTTTCTGCTACCTCAAATGCGTGTATCTTTTTTCTTAGCCTTTCTTCCTTTACTCTTCTCTCAGAAATATTTCTCTTTACTATCCTTACTACATGGAGCTTTGTTTCCAGCTAAGTTTGCTTTTTTCAGAAGTTTATCTCCTAATTCAGTTCCAACCagggttgccagatttagaaaatgaaaaatataggactcccagttaaatgtgaatttcagataaatggtgaacacgtttttagtataaatatgtcccaaatgttgcatgggtcatacccataaaattattcattgtttctctgaaattcaaatttaactgtattttattggacaaccctaTGTAAAACCCTTATGCCTGCAACCTTGTCTGTAAATTTCCTTTGCTGAAGTTCACATCTCCATCAGTGCACTGAACTACGCAGAGGACACTCTTCTGTGGCTGCATTTTCCTCTGCCTGCAGCCATTTCCATCTGGATCCTGCTCTGTTCTCCCCTTGCTGGTTTCTCAGCTTACCTGCAGTCCCCCATTGGCCACTCTTCTTGAGCTGTCTCCTGTTGGTGGCACAGCAGTGTTTATTATGCTTGACACTCCTAGGTTACCTTGAGTCCTCCTTTACTCTTGTCCTGGACAATAACAATTCCTGTTCATTCTTCTTCCGCAGGGGGATCTTTCCCTCCTTCCCTCCTCATCTTTACTTCCCCTTCCCCTTCTCCCTCCTGTCTGTCCCTGCTTGTCTGTTCCCTACACTGCCCTCATTCAGGTTTCTGCCCACCCACTTGCCCACCCAGCCTCCTGCTCTAGACACTCCCTGTCCAGGCCATCTTGCACTGCCTGGTTAATCATTCAGAAATATTGTACCAATTCTACTCTTTCCCTCCTTCAGTGACTTACTATTGTCTGCAGAATGAAGTATAAGTTCCTTATTCAAGGACTCATATGCAGGAACTTTCCAGAATTGTCCTCTTCCTATTTCCCTAGTGCCATTGACATCGTTACTTTGCATcagtgcctaccaccctttccgatactctcactctttcactataatatattattgaaaactcccttcgggaagttttaaattatgtaatcatttggcatacagataaaaggaagcattattttagtttatatcactgtattagtaaatgttacattatatagtttatcctaataaaatgtaataatattcacattatataaatagcaagaaatgttttgacttttccctatttagcaaatgacacacactttcttgtatttgaattaattagataattaaaaatgtgatttttaaataaaatttaaaatggca</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG043733]] | + | [[Category:Sense]][[Category:NONHSAG043733]][[Category:Transcripts]] |
Latest revision as of 01:52, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112438 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2035 nt |
Genomic location |
chr6-:39657754..39682735 |
Exon number |
3 |
Exons |
39657754..39659638,39682468..39682542,39682661..39682735 |
Genome context |
|
Sequence |
000001 TACCCACCAT TTGTATACAG GAGTACAACA GCACAGTGTG GTTGAGACTA CAGGGCAAAC ATTGTGCTAA GTTAGATTTC 000080
000081 AAAGAATTTT TGATCAGGAT GCAAACCAAG AGACCGTTTT TGAAAACATT GCCAAACCAG TTGCTGGGAG TCCTACAGGA 000160 000161 ACTGGATCAA CCCAGCAAGT CTGCAGTTCC CAAGGTCTTC AGGATGAGGC ACCAGTGCAG TTATGTAGTA TTTTTCCGCC 000240 000241 AAAGTGATAT GTTTTAAACT GACAGATTTT CATTGTTCCA TTTGATGCTA ATATTTTCTT CTAACAATAG CTTTTCTCTT 000320 000321 AATGATGCCT TTTACTTATG TAAACATGTT TTTCTCATAA AAACTTAAAT AGTCATTTTG CTTTTTATTA ATGGAATCAC 000400 000401 CACCAAGCAA TCTTTATAAG ATTGTCATTT ATATGGCTAC ATTAAATAAC ACAGTTCTGT TTTCATACAT AGAAATTCTA 000480 000481 ATAATATAAA AAATTATGTA GCCAAAAATA TTGAAACATT TATACATGAA AAGCTTgagt cacagaaacc tagggttgaa 000560 000561 aggaacttca aggtctttag ccttcctcca aGAAATATAA CTTACAAAAG TGAGCAGAAG TTTTTATATA TTCACTTGCC 000640 000641 CTTAGGCTCT TAATTTAACT CCACACTGAG CATTTTCGAC ACTGACTTGT TTTGAGAAAG GTTATCATAA GGGAGCTTTT 000720 000721 CCGTTTCTGC TACCTCAAAT GCGTGTATCT TTTTTCTTAG CCTTTCTTCC TTTACTCTTC TCTCAGAAAT ATTTCTCTTT 000800 000801 ACTATCCTTA CTACATGGAG CTTTGTTTCC AGCTAAGTTT GCTTTTTTCA GAAGTTTATC TCCTAATTCA GTTCCAACCa 000880 000881 gggttgccag atttagaaaa tgaaaaatat aggactccca gttaaatgtg aatttcagat aaatggtgaa cacgttttta 000960 000961 gtataaatat gtcccaaatg ttgcatgggt catacccata aaattattca ttgtttctct gaaattcaaa tttaactgta 001040 001041 ttttattgga caaccctaTG TAAAACCCTT ATGCCTGCAA CCTTGTCTGT AAATTTCCTT TGCTGAAGTT CACATCTCCA 001120 001121 TCAGTGCACT GAACTACGCA GAGGACACTC TTCTGTGGCT GCATTTTCCT CTGCCTGCAG CCATTTCCAT CTGGATCCTG 001200 001201 CTCTGTTCTC CCCTTGCTGG TTTCTCAGCT TACCTGCAGT CCCCCATTGG CCACTCTTCT TGAGCTGTCT CCTGTTGGTG 001280 001281 GCACAGCAGT GTTTATTATG CTTGACACTC CTAGGTTACC TTGAGTCCTC CTTTACTCTT GTCCTGGACA ATAACAATTC 001360 001361 CTGTTCATTC TTCTTCCGCA GGGGGATCTT TCCCTCCTTC CCTCCTCATC TTTACTTCCC CTTCCCCTTC TCCCTCCTGT 001440 001441 CTGTCCCTGC TTGTCTGTTC CCTACACTGC CCTCATTCAG GTTTCTGCCC ACCCACTTGC CCACCCAGCC TCCTGCTCTA 001520 001521 GACACTCCCT GTCCAGGCCA TCTTGCACTG CCTGGTTAAT CATTCAGAAA TATTGTACCA ATTCTACTCT TTCCCTCCTT 001600 001601 CAGTGACTTA CTATTGTCTG CAGAATGAAG TATAAGTTCC TTATTCAAGG ACTCATATGC AGGAACTTTC CAGAATTGTC 001680 001681 CTCTTCCTAT TTCCCTAGTG CCATTGACAT CGTTACTTTG CATcagtgcc taccaccctt tccgatactc tcactctttc 001760 001761 actataatat attattgaaa actcccttcg ggaagtttta aattatgtaa tcatttggca tacagataaa aggaagcatt 001840 001841 attttagttt atatcactgt attagtaaat gttacattat atagtttatc ctaataaaat gtaataatat tcacattata 001920 001921 taaatagcaa gaaatgtttt gacttttccc tatttagcaa atgacacaca ctttcttgta tttgaattaa ttagataatt 002000 002001 aaaaatgtga tttttaaata aaatttaaaa tggca |
Predicted Small Protein
Name | NONHSAT112438_smProtein_98:256 |
Length | 53 |
Molecular weight | 6172.2339 |
Aromaticity | 0.115384615385 |
Instability index | 55.0653846154 |
Isoelectric point | 10.1774291992 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0468619880386 |
Amino acid sequence | MQTKRPFLKTLPNQLLGVLQELDQPSKSAVPKVFRMRHQCSYVVFFRQSDMF |
Secondary structure | LLLLLHHHHLLHHHHHHHHHHLLLLLLLLLLLEEEEEEEEEEEEEEEEELLL |
PRMN | - |
PiMo | - |