Difference between revisions of "NONHSAT114788"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTAATATCCTAACCTTGTTATCTCTTGCCTCCTCCTCTCTGTTTTTATTTGTTTTCAAGGTTTTTCATAAAAACAAATACTAGTTTTGAAGGATTTTTTCTTACATTTAACTGCTCAAACATAATATTTTTGGGGACACCTTCTTATGGAGGAGTTTGAAAACTTTTTATGTTCTTGAGTTTGTCCAATATCAGCTGCTTTTGGGAAAGGAAACAAAAAAGTGAAGGAAATATTTTCAGGAAGTTTTTCTCAACCTACAAAAGCTTTAAAAATAAGAAATTGACAAGTAACTAGACTATGATATGCCTTTGCTTTCATCACAAAAGTTCATCAGCAAACAGGAAAAAAAAAGACCCCTAAAAAGCCTAAAGCTTTAAATTGTCTCCAAATTCTTAAAATTAGTCATCTGTCTTAGATGTACATTTATTTGTCAGCAACCTTGTCTGATTTGAAATAGATGATATGATAAAACATGCATTAACATGAGTAGTTTATTTTTGTTGGGCTCCAGAGTGTAAGAATATTTTATTTTTTGTTTGACATAAAAAGTGAAGTTGACTTGCGTGAATAACAATCCAGCATGCTTTCATTCTTTCTGAATAACACAGAATAACTGTGCTACAGCTTCTGGATTAGTTGTCTATTTCCAGTTAGAGGAGTGTGTGACATTTATGGTTTGGGAATAGCATATTTCTAAAGCATAATATAATACAAGAAATAGTGATGCTCTGTTTTCACAAATTTATCTTTTCATTCACCCATCCATCCATTTAACAGATATTTATTGAGTGCCTATCTTAGGTGTAATAGTATTTAAGACTGAAAGAAGGAGAATTTCTAACCTGTCATAAGAGTAAGGTTTCGTAAATTCATCTTTCCTGAACTTAGGCATTAGTTTGGCAATATGTGAATATGATGAACTCTAAACCTAGCTGATCTGTATATGTATGATGTATATATGTCATATGTATGATATATATGAAATATTCCCATAACTGCATATGAACACATATGCCATATACATATATACCAACGGGCTGAATAACATACTCTTTTGTCTTGGATAATCTGTTTTCTGGGTTATGTATCTGTTGTCTTTGGCCTACTCAGGGATTTTTATTTCTTTAAATAACTTATCTTTTGGACATATTTTTATATTATTTGGAAAACTTTCCAATATTCCTGTTACAAAGTGGTGTCTGTTTTCAGTGATGGCTATTTCATCAGTGCTTGAAATAGTGTGCACTGTGTTGCACAGGTTTTTCATTTTTCTATTGAGTAGATATTTTTAAATTAACATACACATTTTTCTCTTTAAAGGGTCATATCTATTAGGCCTTTCCCTGCTGGTAACTTAAAATGATTATTTGTGAATTTTTTACTAAGTTTCATCAAGATCTTAAAAAGAGAGAAGAAAATAAAAAGTATTATTTATATGTCAGTGCCAACTTTGAAGGTAAAACAGTAGTAGTAACTTTTGGGAGAAATTCTAAAAACTACTTTAAAAAGAAGCGTGCACATAAAATAAATATCTTTCTATCCAAGGCTTGTCATTTTATATGCTTTTATTGTAAATTTAATATATACTACTTTAAAAAATTGAACTATACAGAATTTATAAAATACAACTTTCTCTACTTACCCCACCTCTTATTTTTAGGGGTAACCACTGTTAATGGTTTGGTATGTGTCCTTCCAGACACTTTCTACAAATATACAAATAAGTGTGTTTGTGTATGTGTCTGTGTGTGTATTCATTTTATACAAATAGAAAAATATTCTTACTGTGCTGTGACTCTTTGTCATTTTATTATATATTAATAGATACCTTTCCATAAGCGTTTAAATAGATTTACCTCATTCTTTTATAAATTACTGCATAATCCATTGTAGGAGTATACTTTAACTTATTGAATTAGTCCCCTGTTGAATGGACTACAAGATTATTTTCACTTCTCTATTACAAAGAAAGCAAGAGTGAAGACCCTTTTGCATATATTTTTGTCACCTTGCATGAACATATCCATAAGGTTGTACATTTGTTTTTTACAAGATCTTTGTAATAAACATTTTAATGTAATTTCAGGAGATGAGGTCATAGAGATAATATGAGACCCTTTTTTGGATAAAAAGAAAGATTGTACAGGAGTGCATAATTTTTAAAGAAAATCGTCTTTTGAAGGGTAATTTCCTTTCTGCCTGATTAGCCAAATAAATACCTTGCCAAAACTTACAATAGGAAATTTTTTTTCAATAAAAATAAAATTTGAGG</dnaseq>| | sequence = <dnaseq>TTAATATCCTAACCTTGTTATCTCTTGCCTCCTCCTCTCTGTTTTTATTTGTTTTCAAGGTTTTTCATAAAAACAAATACTAGTTTTGAAGGATTTTTTCTTACATTTAACTGCTCAAACATAATATTTTTGGGGACACCTTCTTATGGAGGAGTTTGAAAACTTTTTATGTTCTTGAGTTTGTCCAATATCAGCTGCTTTTGGGAAAGGAAACAAAAAAGTGAAGGAAATATTTTCAGGAAGTTTTTCTCAACCTACAAAAGCTTTAAAAATAAGAAATTGACAAGTAACTAGACTATGATATGCCTTTGCTTTCATCACAAAAGTTCATCAGCAAACAGGAAAAAAAAAGACCCCTAAAAAGCCTAAAGCTTTAAATTGTCTCCAAATTCTTAAAATTAGTCATCTGTCTTAGATGTACATTTATTTGTCAGCAACCTTGTCTGATTTGAAATAGATGATATGATAAAACATGCATTAACATGAGTAGTTTATTTTTGTTGGGCTCCAGAGTGTAAGAATATTTTATTTTTTGTTTGACATAAAAAGTGAAGTTGACTTGCGTGAATAACAATCCAGCATGCTTTCATTCTTTCTGAATAACACAGAATAACTGTGCTACAGCTTCTGGATTAGTTGTCTATTTCCAGTTAGAGGAGTGTGTGACATTTATGGTTTGGGAATAGCATATTTCTAAAGCATAATATAATACAAGAAATAGTGATGCTCTGTTTTCACAAATTTATCTTTTCATTCACCCATCCATCCATTTAACAGATATTTATTGAGTGCCTATCTTAGGTGTAATAGTATTTAAGACTGAAAGAAGGAGAATTTCTAACCTGTCATAAGAGTAAGGTTTCGTAAATTCATCTTTCCTGAACTTAGGCATTAGTTTGGCAATATGTGAATATGATGAACTCTAAACCTAGCTGATCTGTATATGTATGATGTATATATGTCATATGTATGATATATATGAAATATTCCCATAACTGCATATGAACACATATGCCATATACATATATACCAACGGGCTGAATAACATACTCTTTTGTCTTGGATAATCTGTTTTCTGGGTTATGTATCTGTTGTCTTTGGCCTACTCAGGGATTTTTATTTCTTTAAATAACTTATCTTTTGGACATATTTTTATATTATTTGGAAAACTTTCCAATATTCCTGTTACAAAGTGGTGTCTGTTTTCAGTGATGGCTATTTCATCAGTGCTTGAAATAGTGTGCACTGTGTTGCACAGGTTTTTCATTTTTCTATTGAGTAGATATTTTTAAATTAACATACACATTTTTCTCTTTAAAGGGTCATATCTATTAGGCCTTTCCCTGCTGGTAACTTAAAATGATTATTTGTGAATTTTTTACTAAGTTTCATCAAGATCTTAAAAAGAGAGAAGAAAATAAAAAGTATTATTTATATGTCAGTGCCAACTTTGAAGGTAAAACAGTAGTAGTAACTTTTGGGAGAAATTCTAAAAACTACTTTAAAAAGAAGCGTGCACATAAAATAAATATCTTTCTATCCAAGGCTTGTCATTTTATATGCTTTTATTGTAAATTTAATATATACTACTTTAAAAAATTGAACTATACAGAATTTATAAAATACAACTTTCTCTACTTACCCCACCTCTTATTTTTAGGGGTAACCACTGTTAATGGTTTGGTATGTGTCCTTCCAGACACTTTCTACAAATATACAAATAAGTGTGTTTGTGTATGTGTCTGTGTGTGTATTCATTTTATACAAATAGAAAAATATTCTTACTGTGCTGTGACTCTTTGTCATTTTATTATATATTAATAGATACCTTTCCATAAGCGTTTAAATAGATTTACCTCATTCTTTTATAAATTACTGCATAATCCATTGTAGGAGTATACTTTAACTTATTGAATTAGTCCCCTGTTGAATGGACTACAAGATTATTTTCACTTCTCTATTACAAAGAAAGCAAGAGTGAAGACCCTTTTGCATATATTTTTGTCACCTTGCATGAACATATCCATAAGGTTGTACATTTGTTTTTTACAAGATCTTTGTAATAAACATTTTAATGTAATTTCAGGAGATGAGGTCATAGAGATAATATGAGACCCTTTTTTGGATAAAAAGAAAGATTGTACAGGAGTGCATAATTTTTAAAGAAAATCGTCTTTTGAAGGGTAATTTCCTTTCTGCCTGATTAGCCAAATAAATACCTTGCCAAAACTTACAATAGGAAATTTTTTTTCAATAAAAATAAAATTTGAGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG044760]][[Category:Transcripts]] |
Latest revision as of 02:01, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT114788 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2272 nt |
| Genomic location |
chr6+:125405212..125407484 |
| Exon number |
1 |
| Exons |
125405212..125407484 |
| Genome context |
|
| Sequence |
000001 TTAATATCCT AACCTTGTTA TCTCTTGCCT CCTCCTCTCT GTTTTTATTT GTTTTCAAGG TTTTTCATAA AAACAAATAC 000080
000081 TAGTTTTGAA GGATTTTTTC TTACATTTAA CTGCTCAAAC ATAATATTTT TGGGGACACC TTCTTATGGA GGAGTTTGAA 000160 000161 AACTTTTTAT GTTCTTGAGT TTGTCCAATA TCAGCTGCTT TTGGGAAAGG AAACAAAAAA GTGAAGGAAA TATTTTCAGG 000240 000241 AAGTTTTTCT CAACCTACAA AAGCTTTAAA AATAAGAAAT TGACAAGTAA CTAGACTATG ATATGCCTTT GCTTTCATCA 000320 000321 CAAAAGTTCA TCAGCAAACA GGAAAAAAAA AGACCCCTAA AAAGCCTAAA GCTTTAAATT GTCTCCAAAT TCTTAAAATT 000400 000401 AGTCATCTGT CTTAGATGTA CATTTATTTG TCAGCAACCT TGTCTGATTT GAAATAGATG ATATGATAAA ACATGCATTA 000480 000481 ACATGAGTAG TTTATTTTTG TTGGGCTCCA GAGTGTAAGA ATATTTTATT TTTTGTTTGA CATAAAAAGT GAAGTTGACT 000560 000561 TGCGTGAATA ACAATCCAGC ATGCTTTCAT TCTTTCTGAA TAACACAGAA TAACTGTGCT ACAGCTTCTG GATTAGTTGT 000640 000641 CTATTTCCAG TTAGAGGAGT GTGTGACATT TATGGTTTGG GAATAGCATA TTTCTAAAGC ATAATATAAT ACAAGAAATA 000720 000721 GTGATGCTCT GTTTTCACAA ATTTATCTTT TCATTCACCC ATCCATCCAT TTAACAGATA TTTATTGAGT GCCTATCTTA 000800 000801 GGTGTAATAG TATTTAAGAC TGAAAGAAGG AGAATTTCTA ACCTGTCATA AGAGTAAGGT TTCGTAAATT CATCTTTCCT 000880 000881 GAACTTAGGC ATTAGTTTGG CAATATGTGA ATATGATGAA CTCTAAACCT AGCTGATCTG TATATGTATG ATGTATATAT 000960 000961 GTCATATGTA TGATATATAT GAAATATTCC CATAACTGCA TATGAACACA TATGCCATAT ACATATATAC CAACGGGCTG 001040 001041 AATAACATAC TCTTTTGTCT TGGATAATCT GTTTTCTGGG TTATGTATCT GTTGTCTTTG GCCTACTCAG GGATTTTTAT 001120 001121 TTCTTTAAAT AACTTATCTT TTGGACATAT TTTTATATTA TTTGGAAAAC TTTCCAATAT TCCTGTTACA AAGTGGTGTC 001200 001201 TGTTTTCAGT GATGGCTATT TCATCAGTGC TTGAAATAGT GTGCACTGTG TTGCACAGGT TTTTCATTTT TCTATTGAGT 001280 001281 AGATATTTTT AAATTAACAT ACACATTTTT CTCTTTAAAG GGTCATATCT ATTAGGCCTT TCCCTGCTGG TAACTTAAAA 001360 001361 TGATTATTTG TGAATTTTTT ACTAAGTTTC ATCAAGATCT TAAAAAGAGA GAAGAAAATA AAAAGTATTA TTTATATGTC 001440 001441 AGTGCCAACT TTGAAGGTAA AACAGTAGTA GTAACTTTTG GGAGAAATTC TAAAAACTAC TTTAAAAAGA AGCGTGCACA 001520 001521 TAAAATAAAT ATCTTTCTAT CCAAGGCTTG TCATTTTATA TGCTTTTATT GTAAATTTAA TATATACTAC TTTAAAAAAT 001600 001601 TGAACTATAC AGAATTTATA AAATACAACT TTCTCTACTT ACCCCACCTC TTATTTTTAG GGGTAACCAC TGTTAATGGT 001680 001681 TTGGTATGTG TCCTTCCAGA CACTTTCTAC AAATATACAA ATAAGTGTGT TTGTGTATGT GTCTGTGTGT GTATTCATTT 001760 001761 TATACAAATA GAAAAATATT CTTACTGTGC TGTGACTCTT TGTCATTTTA TTATATATTA ATAGATACCT TTCCATAAGC 001840 001841 GTTTAAATAG ATTTACCTCA TTCTTTTATA AATTACTGCA TAATCCATTG TAGGAGTATA CTTTAACTTA TTGAATTAGT 001920 001921 CCCCTGTTGA ATGGACTACA AGATTATTTT CACTTCTCTA TTACAAAGAA AGCAAGAGTG AAGACCCTTT TGCATATATT 002000 002001 TTTGTCACCT TGCATGAACA TATCCATAAG GTTGTACATT TGTTTTTTAC AAGATCTTTG TAATAAACAT TTTAATGTAA 002080 002081 TTTCAGGAGA TGAGGTCATA GAGATAATAT GAGACCCTTT TTTGGATAAA AAGAAAGATT GTACAGGAGT GCATAATTTT 002160 002161 TAAAGAAAAT CGTCTTTTGA AGGGTAATTT CCTTTCTGCC TGATTAGCCA AATAAATACC TTGCCAAAAC TTACAATAGG 002240 002241 AAATTTTTTT TCAATAAAAA TAAAATTTGA GG |
Predicted Small Protein
| Name | NONHSAT114788_smProtein_1082:1291 |
| Length | 70 |
| Molecular weight | 7956.5386 |
| Aromaticity | 0.188405797101 |
| Instability index | 41.6217391304 |
| Isoelectric point | 9.23748779297 |
| Runs | 9 |
| Runs residual | 0.0088965418281 |
| Runs probability | 0.0516006202281 |
| Amino acid sequence | MYLLSLAYSGIFISLNNLSFGHIFILFGKLSNIPVTKWCLFSVMAISSVLEIVCTVLHRF FIFLLSRYF |
| Secondary structure | LLHHHHHHLLEEEEELLLLLLEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHL |
| PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHL LLLLLLLLL |
| PiMo | iiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTTTTTi iiiiiiiii |
