Difference between revisions of "NONHSAT116813"
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sequence = <dnaseq>GCAGTGCTAATATTATCAATTATTAGTGTCTCCGCAACTTCAGTATCTCTTATTATTCTAATTCTACTAACTATTCTCGAGTTTGCTGTTGCTCTTATTCAAGCTTATGTCTTCACACTATTAGTAAGTCTTTATTTGCATGATAATACATAATGACCCACCAAACACTTGCCTACCATATAGCTGTACCTAGCCCTTGACCACTAACAGGAGCTCTCTCGGCTCTCCTAATAACATCTGGCCTGGCCATATGATTTCACTTTAATTCTACCACTCTTTTAACTTTAGGCCTACTAACCAACACACTGACTATACATCAGTGATGACGTGATATTGTCCGAGAAAGTATATTCCAAGGCCACCACACAACAATTGTCCTAAAAGACCTCCGATACGGGATGCTCCTATTTATTACCTCAGAAGTATTCTTCTTCGCTGGTTTTTTTCTGGGCATTCTATCACTCCAGTTTAGCACCGACCCCAGAATTAGGAGGACATTGACCCCCAACAGGTATTCTTCCCCTGAACCCTTTAGAAGTATCTCTCCTAAATACGTCTGTATTACTTGCATCAGGAGTTTCAATTACTTGAGCCCATCACAGCCTAATAGAAGGTAACCAAAAACAAATAATTCAAGCAGTACTTACCACGATCCTCTTAGGAGTCTATTTCACTCTTCTACAAGTCTCAGAATATTTCGAGGCCCCTTTATTATCTCTGATGGAATCTATGGCTCAACATTCTTTGTAGCCACAGGCTTTCATGGACTTCATGTTATTATTGGATCAACAATTCTCACCATCTGCCTTCTTGCCAATTAAAATTTCATTTT</dnaseq>| | sequence = <dnaseq>GCAGTGCTAATATTATCAATTATTAGTGTCTCCGCAACTTCAGTATCTCTTATTATTCTAATTCTACTAACTATTCTCGAGTTTGCTGTTGCTCTTATTCAAGCTTATGTCTTCACACTATTAGTAAGTCTTTATTTGCATGATAATACATAATGACCCACCAAACACTTGCCTACCATATAGCTGTACCTAGCCCTTGACCACTAACAGGAGCTCTCTCGGCTCTCCTAATAACATCTGGCCTGGCCATATGATTTCACTTTAATTCTACCACTCTTTTAACTTTAGGCCTACTAACCAACACACTGACTATACATCAGTGATGACGTGATATTGTCCGAGAAAGTATATTCCAAGGCCACCACACAACAATTGTCCTAAAAGACCTCCGATACGGGATGCTCCTATTTATTACCTCAGAAGTATTCTTCTTCGCTGGTTTTTTTCTGGGCATTCTATCACTCCAGTTTAGCACCGACCCCAGAATTAGGAGGACATTGACCCCCAACAGGTATTCTTCCCCTGAACCCTTTAGAAGTATCTCTCCTAAATACGTCTGTATTACTTGCATCAGGAGTTTCAATTACTTGAGCCCATCACAGCCTAATAGAAGGTAACCAAAAACAAATAATTCAAGCAGTACTTACCACGATCCTCTTAGGAGTCTATTTCACTCTTCTACAAGTCTCAGAATATTTCGAGGCCCCTTTATTATCTCTGATGGAATCTATGGCTCAACATTCTTTGTAGCCACAGGCTTTCATGGACTTCATGTTATTATTGGATCAACAATTCTCACCATCTGCCTTCTTGCCAATTAAAATTTCATTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG045797]] | + | [[Category:Intergenic]][[Category:NONHSAG045797]][[Category:Transcripts]] |
Latest revision as of 02:10, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT116813 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
832 nt |
Genomic location |
chr6_cox_hap2-:4119541..4120372 |
Exon number |
1 |
Exons |
4119541..4120372 |
Genome context |
|
Sequence |
000001 GCAGTGCTAA TATTATCAAT TATTAGTGTC TCCGCAACTT CAGTATCTCT TATTATTCTA ATTCTACTAA CTATTCTCGA 000080
000081 GTTTGCTGTT GCTCTTATTC AAGCTTATGT CTTCACACTA TTAGTAAGTC TTTATTTGCA TGATAATACA TAATGACCCA 000160 000161 CCAAACACTT GCCTACCATA TAGCTGTACC TAGCCCTTGA CCACTAACAG GAGCTCTCTC GGCTCTCCTA ATAACATCTG 000240 000241 GCCTGGCCAT ATGATTTCAC TTTAATTCTA CCACTCTTTT AACTTTAGGC CTACTAACCA ACACACTGAC TATACATCAG 000320 000321 TGATGACGTG ATATTGTCCG AGAAAGTATA TTCCAAGGCC ACCACACAAC AATTGTCCTA AAAGACCTCC GATACGGGAT 000400 000401 GCTCCTATTT ATTACCTCAG AAGTATTCTT CTTCGCTGGT TTTTTTCTGG GCATTCTATC ACTCCAGTTT AGCACCGACC 000480 000481 CCAGAATTAG GAGGACATTG ACCCCCAACA GGTATTCTTC CCCTGAACCC TTTAGAAGTA TCTCTCCTAA ATACGTCTGT 000560 000561 ATTACTTGCA TCAGGAGTTT CAATTACTTG AGCCCATCAC AGCCTAATAG AAGGTAACCA AAAACAAATA ATTCAAGCAG 000640 000641 TACTTACCAC GATCCTCTTA GGAGTCTATT TCACTCTTCT ACAAGTCTCA GAATATTTCG AGGCCCCTTT ATTATCTCTG 000720 000721 ATGGAATCTA TGGCTCAACA TTCTTTGTAG CCACAGGCTT TCATGGACTT CATGTTATTA TTGGATCAAC AATTCTCACC 000800 000801 ATCTGCCTTC TTGCCAATTA AAATTTCATT TT |
Predicted Small Protein
Name | NONHSAT116813_smProtein_398:616 |
Length | 73 |
Molecular weight | 8429.7106 |
Aromaticity | 0.166666666667 |
Instability index | 80.3069444444 |
Isoelectric point | 10.4080200195 |
Runs | 12 |
Runs residual | 0.0257502027575 |
Runs probability | 0.0439630807279 |
Amino acid sequence | MLLFITSEVFFFAGFFLGILSLQFSTDPRIRRTLTPNRYSSPEPFRSISPKYVCITCIRS FNYLSPSQPNRR |
Secondary structure | LEEEEELHHHHHHHHHHHHEEEEELLLLLEEELLLLLLLLLLLLLLLLLLLEEEEEEEEE ELEELLLLLLLL |
PRMN | LLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? ???????????? |