Difference between revisions of "NONHSAT133884"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>agttttgctagcagaaaatacgactctcttctatgctgtggtaaaatagtacaaccacaaggccaggatccatagaatgtgaccagctgtttcagtggttttctgttactatttgtgaagtcttcattcttgtcatctctagcagaagagtggtgccagttgccagaggtttgaggaaaaagaagtcatgggagaatttacatttcagaaaattccattcattgacttaattatttctgggaattcagaaaagaccaccatgatcctttagccgcgaaaacacttgggccagttttggaaatgctagaatcctgcaggagaagcttttgagaaATTCAGTACTGTGCAGTGTTGTAACCCGAATACTTTGCTGGGAGAAAGGGTTACTGAGAGATCATATTCACAAATCAACGTGCAATAGTGAAAAAAGATGGCAACACTGAAGAACCttactgaataacccagtatggaccacgtattgtaataggcacttaatttctctcaatcctttcgatatctccttgaaataggtactattagccctcaatttacagataagaaaactgaggctgagGCGAAGGTcatatgatagctgcttaataaaatttgctgatcgaatgaaGGAGCTAATGAATTCAATAAAATCAGGGAAGGCTTCTTGGAGGAGGAGCACCTTGCTCCAGTGGGCTGAGAAGACATTCCATGAGACCAGAGCAAGGAGAGGAGTGGCCTGGCAGCTGAAGCCAGAGACAGACTTGAACCTGGAGGTATGAAAGCCTGTGTGGGGGATCAGGTAGTCTGTACAATCTTGGGGCTTGGTAGGTTTCAAGTGGAGGCCACACTGCGGGGAGATTGTAGGGGTTGACAGGGAATTCTGATTAAGCTATTTCAG</dnaseq>| | sequence = <dnaseq>agttttgctagcagaaaatacgactctcttctatgctgtggtaaaatagtacaaccacaaggccaggatccatagaatgtgaccagctgtttcagtggttttctgttactatttgtgaagtcttcattcttgtcatctctagcagaagagtggtgccagttgccagaggtttgaggaaaaagaagtcatgggagaatttacatttcagaaaattccattcattgacttaattatttctgggaattcagaaaagaccaccatgatcctttagccgcgaaaacacttgggccagttttggaaatgctagaatcctgcaggagaagcttttgagaaATTCAGTACTGTGCAGTGTTGTAACCCGAATACTTTGCTGGGAGAAAGGGTTACTGAGAGATCATATTCACAAATCAACGTGCAATAGTGAAAAAAGATGGCAACACTGAAGAACCttactgaataacccagtatggaccacgtattgtaataggcacttaatttctctcaatcctttcgatatctccttgaaataggtactattagccctcaatttacagataagaaaactgaggctgagGCGAAGGTcatatgatagctgcttaataaaatttgctgatcgaatgaaGGAGCTAATGAATTCAATAAAATCAGGGAAGGCTTCTTGGAGGAGGAGCACCTTGCTCCAGTGGGCTGAGAAGACATTCCATGAGACCAGAGCAAGGAGAGGAGTGGCCTGGCAGCTGAAGCCAGAGACAGACTTGAACCTGGAGGTATGAAAGCCTGTGTGGGGGATCAGGTAGTCTGTACAATCTTGGGGCTTGGTAGGTTTCAAGTGGAGGCCACACTGCGGGGAGATTGTAGGGGTTGACAGGGAATTCTGATTAAGCTATTTCAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG053143]][[Category:Transcripts]] |
Latest revision as of 02:32, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT133884 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
892 nt |
| Genomic location |
chr9+:110329106..110338504 |
| Exon number |
3 |
| Exons |
110329106..110329478,110331339..110331539,110338187..110338504 |
| Genome context |
|
| Sequence |
000001 agttttgcta gcagaaaata cgactctctt ctatgctgtg gtaaaatagt acaaccacaa ggccaggatc catagaatgt 000080
000081 gaccagctgt ttcagtggtt ttctgttact atttgtgaag tcttcattct tgtcatctct agcagaagag tggtgccagt 000160 000161 tgccagaggt ttgaggaaaa agaagtcatg ggagaattta catttcagaa aattccattc attgacttaa ttatttctgg 000240 000241 gaattcagaa aagaccacca tgatccttta gccgcgaaaa cacttgggcc agttttggaa atgctagaat cctgcaggag 000320 000321 aagcttttga gaaATTCAGT ACTGTGCAGT GTTGTAACCC GAATACTTTG CTGGGAGAAA GGGTTACTGA GAGATCATAT 000400 000401 TCACAAATCA ACGTGCAATA GTGAAAAAAG ATGGCAACAC TGAAGAACCt tactgaataa cccagtatgg accacgtatt 000480 000481 gtaataggca cttaatttct ctcaatcctt tcgatatctc cttgaaatag gtactattag ccctcaattt acagataaga 000560 000561 aaactgaggc tgagGCGAAG GTcatatgat agctgcttaa taaaatttgc tgatcgaatg aaGGAGCTAA TGAATTCAAT 000640 000641 AAAATCAGGG AAGGCTTCTT GGAGGAGGAG CACCTTGCTC CAGTGGGCTG AGAAGACATT CCATGAGACC AGAGCAAGGA 000720 000721 GAGGAGTGGC CTGGCAGCTG AAGCCAGAGA CAGACTTGAA CCTGGAGGTA TGAAAGCCTG TGTGGGGGAT CAGGTAGTCT 000800 000801 GTACAATCTT GGGGCTTGGT AGGTTTCAAG TGGAGGCCAC ACTGCGGGGA GATTGTAGGG GTTGACAGGG AATTCTGATT 000880 000881 AAGCTATTTC AG |
Predicted Small Protein
| Name | NONHSAT133884_smProtein_617:772 |
| Length | 52 |
| Molecular weight | 6028.8805 |
| Aromaticity | 0.078431372549 |
| Instability index | 42.0176470588 |
| Isoelectric point | 10.151184082 |
| Runs | 8 |
| Runs residual | 0.00262085032033 |
| Runs probability | 0.0301956368133 |
| Amino acid sequence | MKELMNSIKSGKASWRRSTLLQWAEKTFHETRARRGVAWQLKPETDLNLEV |
| Secondary structure | LHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHLHHHEELLLLLLLLLL |
| PRMN | - |
| PiMo | - |
