Difference between revisions of "NONHSAT136289"

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sequence = <dnaseq>gtgaactcaaaccTTCAGACGTGAAGCTGGAAATGAATTTCCTTGGCTTCGATGTCTCCATCTCAAAAATGACTGTATTTTTGGGAAGGTTGCTTCAGAGTCCACGTTCTATTGGCCATTCCACTGATTCCGCATCTCCTTGACAAATGAATCTTGGGCCAAAAGTTCATTGTGGGGACGCTGTTCagtagttccatgagagcaggaagcagatctatcttACTGAGGACACTCCTGGTGCCAAACTATCTGGGGAAGAGGAAACCAagaatccagtgcagtcttagaagatgggggagttgctaatggaaggaaccaggtctctgaaagacttcatagaacacagtaccacactttgtgacatcccctgacaacctcattagactgtgacataggcaagaaataaatcttggttgtgtttgcccctgaaattccagggctgtttgttacaatggttaacctcttctgacaaatTTCATAAAATTCCATttaccctcgcttttcctcactacatattattcagtttaagattcggttcactgtcctccaggaagccttccttgacttccctgtggctggcttttgtgttccca</dnaseq>|
 
sequence = <dnaseq>gtgaactcaaaccTTCAGACGTGAAGCTGGAAATGAATTTCCTTGGCTTCGATGTCTCCATCTCAAAAATGACTGTATTTTTGGGAAGGTTGCTTCAGAGTCCACGTTCTATTGGCCATTCCACTGATTCCGCATCTCCTTGACAAATGAATCTTGGGCCAAAAGTTCATTGTGGGGACGCTGTTCagtagttccatgagagcaggaagcagatctatcttACTGAGGACACTCCTGGTGCCAAACTATCTGGGGAAGAGGAAACCAagaatccagtgcagtcttagaagatgggggagttgctaatggaaggaaccaggtctctgaaagacttcatagaacacagtaccacactttgtgacatcccctgacaacctcattagactgtgacataggcaagaaataaatcttggttgtgtttgcccctgaaattccagggctgtttgttacaatggttaacctcttctgacaaatTTCATAAAATTCCATttaccctcgcttttcctcactacatattattcagtttaagattcggttcactgtcctccaggaagccttccttgacttccctgtggctggcttttgtgttccca</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG054037]]
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[[Category:Intergenic]][[Category:NONHSAG054037]][[Category:Transcripts]]

Latest revision as of 02:40, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT136289

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

593 nt

Genomic location

chrX+:13282240..13283984

Exon number

2

Exons

13282240..13282425,13283578..13283984

Genome context

Sequence
000001 gtgaactcaa accTTCAGAC GTGAAGCTGG AAATGAATTT CCTTGGCTTC GATGTCTCCA TCTCAAAAAT GACTGTATTT 000080
000081 TTGGGAAGGT TGCTTCAGAG TCCACGTTCT ATTGGCCATT CCACTGATTC CGCATCTCCT TGACAAATGA ATCTTGGGCC 000160
000161 AAAAGTTCAT TGTGGGGACG CTGTTCagta gttccatgag agcaggaagc agatctatct tACTGAGGAC ACTCCTGGTG 000240
000241 CCAAACTATC TGGGGAAGAG GAAACCAaga atccagtgca gtcttagaag atgggggagt tgctaatgga aggaaccagg 000320
000321 tctctgaaag acttcataga acacagtacc acactttgtg acatcccctg acaacctcat tagactgtga cataggcaag 000400
000401 aaataaatct tggttgtgtt tgcccctgaa attccagggc tgtttgttac aatggttaac ctcttctgac aaatTTCATA 000480
000481 AAATTCCATt taccctcgct tttcctcact acatattatt cagtttaaga ttcggttcac tgtcctccag gaagccttcc 000560
000561 ttgacttccc tgtggctggc ttttgtgttc cca
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Predicted Small Protein

Name NONHSAT136289_smProtein_32:142
Length 37
Molecular weight 3897.437
Aromaticity 0.0833333333333
Instability index 78.3638888889
Isoelectric point 8.51690673828
Runs 7
Runs residual 0.013986013986
Runs probability 0.0321497968556
Amino acid sequence MNFLGFDVSISKMTVFLGRLLQSPRSIGHSTDSASP
Secondary structure LLEELLLEEEELLLHHHHHHHLLLLLLLLLLLLLLL
PRMN -
PiMo -