Difference between revisions of "NONHSAT137697"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>acctttgcctcccggattcaagtgattctcctgtctcagcctccctagtaactggaattacaggcgcctgccaccatgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaacctggtcttgaactcctgacctcaggcgatccacccacctcagcctcccaaagtgctaggcttacaggcatgagacaccgcgcccggcTTATATATCATTACTTTCTTGGCTGAGAGCTGTAGTCTGTGGTAGTTGttttgttttgttttttgttttttttttgtAGTTTTCTTGATCGTGATCAATTAAGCAGAAAGTAGAATTTCAGTCAGGTAACCTGTCTATATTAGCTAAATTATCTTTTGCTTATTACATAGAGTGCTAGAAGTATGCTGTCATGGCATATGTCCTAGTTTCTCATCAAATGGACCAAAGTCAGTGATTTTATTTGAAGAGGAAAAATTGAACGTCATTGTAAATTAAGTTGCAAGTTTAGTAACCATATTGTACCACTGTTTGATAAATTTGAACGCTTTATGGTATTTCATATTTAGAATGTTCAAAATAGTACTGAAGTATTCAAATACATACAACCCTGAGCGATATTGAAGTAAAATAAACATGTATTTAAGGAAGTGTCAACCTTCAATTATATACCTTTTTGTCACTGAATTAACACTTATTTCTCACGACGTGGAAGCAGTTTCAGTATGGTTTGTACTAAGCTAAGTGATAGTTGTCATCTGTATGACAATTTAGAATGTTTTCTGTGTCCATTTGTGATCAAAATTATATGTTGCTTTGTGTGATAAAACCTGGTGGTGGTAGTAACTTTGAACACACTTTTTGAACTTAATTTTGTAGTTAATCTTATCCTGATGAGTAATTCTAAAACTTATGACCACTACTAGAAATGAAGCAGTTTTTTGTGTGTGTGTGCCATCACAGTATATACTGACCTTGGAGCTTTCCTAGTGCTCTCAGAGCCATGAAAATATCCTTTCACACAAATTTTCTCAACTTACCCGTAACATCGCTTTGAGTTTCAGTCATACCTAGAGTTGGAAAGTCGTCAAATTAGTCCTCTGTCCTCAAGTATCTGTAAGTCTGAAGAATTTAGGTAAGTTACTTACCTTAAAATCATTGCCAATCCTTTAAACTCTATTTGGATGGCTGTGAAATATTTTAACATTAGGGTTAATGTCATAAATCCCAttctttttttttttttgagaccgagttttgctctgtcatccaggctggagttcagtggtgtgattttggctcactgcaacctccgcctcctgggttcaagggattctgc</dnaseq>| | sequence = <dnaseq>acctttgcctcccggattcaagtgattctcctgtctcagcctccctagtaactggaattacaggcgcctgccaccatgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaacctggtcttgaactcctgacctcaggcgatccacccacctcagcctcccaaagtgctaggcttacaggcatgagacaccgcgcccggcTTATATATCATTACTTTCTTGGCTGAGAGCTGTAGTCTGTGGTAGTTGttttgttttgttttttgttttttttttgtAGTTTTCTTGATCGTGATCAATTAAGCAGAAAGTAGAATTTCAGTCAGGTAACCTGTCTATATTAGCTAAATTATCTTTTGCTTATTACATAGAGTGCTAGAAGTATGCTGTCATGGCATATGTCCTAGTTTCTCATCAAATGGACCAAAGTCAGTGATTTTATTTGAAGAGGAAAAATTGAACGTCATTGTAAATTAAGTTGCAAGTTTAGTAACCATATTGTACCACTGTTTGATAAATTTGAACGCTTTATGGTATTTCATATTTAGAATGTTCAAAATAGTACTGAAGTATTCAAATACATACAACCCTGAGCGATATTGAAGTAAAATAAACATGTATTTAAGGAAGTGTCAACCTTCAATTATATACCTTTTTGTCACTGAATTAACACTTATTTCTCACGACGTGGAAGCAGTTTCAGTATGGTTTGTACTAAGCTAAGTGATAGTTGTCATCTGTATGACAATTTAGAATGTTTTCTGTGTCCATTTGTGATCAAAATTATATGTTGCTTTGTGTGATAAAACCTGGTGGTGGTAGTAACTTTGAACACACTTTTTGAACTTAATTTTGTAGTTAATCTTATCCTGATGAGTAATTCTAAAACTTATGACCACTACTAGAAATGAAGCAGTTTTTTGTGTGTGTGTGCCATCACAGTATATACTGACCTTGGAGCTTTCCTAGTGCTCTCAGAGCCATGAAAATATCCTTTCACACAAATTTTCTCAACTTACCCGTAACATCGCTTTGAGTTTCAGTCATACCTAGAGTTGGAAAGTCGTCAAATTAGTCCTCTGTCCTCAAGTATCTGTAAGTCTGAAGAATTTAGGTAAGTTACTTACCTTAAAATCATTGCCAATCCTTTAAACTCTATTTGGATGGCTGTGAAATATTTTAACATTAGGGTTAATGTCATAAATCCCAttctttttttttttttgagaccgagttttgctctgtcatccaggctggagttcagtggtgtgattttggctcactgcaacctccgcctcctgggttcaagggattctgc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG054838]][[Category:Transcripts]] |
Latest revision as of 02:46, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT137697 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1336 nt |
| Genomic location |
chrX+:77162205..77163540 |
| Exon number |
1 |
| Exons |
77162205..77163540 |
| Genome context |
|
| Sequence |
000001 acctttgcct cccggattca agtgattctc ctgtctcagc ctccctagta actggaatta caggcgcctg ccaccatgcc 000080
000081 tggctaattt ttgtattttt agtagagatg gggtttcacc atgttggcca acctggtctt gaactcctga cctcaggcga 000160 000161 tccacccacc tcagcctccc aaagtgctag gcttacaggc atgagacacc gcgcccggcT TATATATCAT TACTTTCTTG 000240 000241 GCTGAGAGCT GTAGTCTGTG GTAGTTGttt tgttttgttt tttgtttttt ttttgtAGTT TTCTTGATCG TGATCAATTA 000320 000321 AGCAGAAAGT AGAATTTCAG TCAGGTAACC TGTCTATATT AGCTAAATTA TCTTTTGCTT ATTACATAGA GTGCTAGAAG 000400 000401 TATGCTGTCA TGGCATATGT CCTAGTTTCT CATCAAATGG ACCAAAGTCA GTGATTTTAT TTGAAGAGGA AAAATTGAAC 000480 000481 GTCATTGTAA ATTAAGTTGC AAGTTTAGTA ACCATATTGT ACCACTGTTT GATAAATTTG AACGCTTTAT GGTATTTCAT 000560 000561 ATTTAGAATG TTCAAAATAG TACTGAAGTA TTCAAATACA TACAACCCTG AGCGATATTG AAGTAAAATA AACATGTATT 000640 000641 TAAGGAAGTG TCAACCTTCA ATTATATACC TTTTTGTCAC TGAATTAACA CTTATTTCTC ACGACGTGGA AGCAGTTTCA 000720 000721 GTATGGTTTG TACTAAGCTA AGTGATAGTT GTCATCTGTA TGACAATTTA GAATGTTTTC TGTGTCCATT TGTGATCAAA 000800 000801 ATTATATGTT GCTTTGTGTG ATAAAACCTG GTGGTGGTAG TAACTTTGAA CACACTTTTT GAACTTAATT TTGTAGTTAA 000880 000881 TCTTATCCTG ATGAGTAATT CTAAAACTTA TGACCACTAC TAGAAATGAA GCAGTTTTTT GTGTGTGTGT GCCATCACAG 000960 000961 TATATACTGA CCTTGGAGCT TTCCTAGTGC TCTCAGAGCC ATGAAAATAT CCTTTCACAC AAATTTTCTC AACTTACCCG 001040 001041 TAACATCGCT TTGAGTTTCA GTCATACCTA GAGTTGGAAA GTCGTCAAAT TAGTCCTCTG TCCTCAAGTA TCTGTAAGTC 001120 001121 TGAAGAATTT AGGTAAGTTA CTTACCTTAA AATCATTGCC AATCCTTTAA ACTCTATTTG GATGGCTGTG AAATATTTTA 001200 001201 ACATTAGGGT TAATGTCATA AATCCCAttc tttttttttt tttgagaccg agttttgctc tgtcatccag gctggagttc 001280 001281 agtggtgtga ttttggctca ctgcaacctc cgcctcctgg gttcaaggga ttctgc |
Predicted Small Protein
| Name | NONHSAT137697_smProtein_107:244 |
| Length | 46 |
| Molecular weight | 4964.6033 |
| Aromaticity | 0.0888888888889 |
| Instability index | 43.72 |
| Isoelectric point | 9.96917724609 |
| Runs | 9 |
| Runs residual | 0.0377525252525 |
| Runs probability | 0.0462325070168 |
| Amino acid sequence | MGFHHVGQPGLELLTSGDPPTSASQSARLTGMRHRARLIYHYFLG |
| Secondary structure | LLEEELLLLLLEEELLLLLLLLHHHHHHHLLLHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
