Difference between revisions of "NONHSAT138165"
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==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...") |
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sequence = <dnaseq>CCAGTCTATAGGCTTCACAAGGAGCCATGGCCTGTATTTGGGGCATTGGGGAGCATAAGGCATCTGAACTGGTCCAGATCTCACTCTTATCTTGGGCCAAGCCAACGTGGAGAGAAGCAACCCAACCAGACTCTTGGCAGCCTGCCTTACAGGGTAGCCCACCTTATAGGGTAGCCCTCATATCTGCCCTGTGCCGGCCCTCTACTGCCCCAGCTTTGGTACAGGAGTGAGGGAGAAGCTGGAGCTTGCACACCCAGTGGCCAGTGGGGCTGTCTTCCCAGCTCCTCCTCAGGGCTTTCCTGTCAGTGCCAAGCCAGTTCCCCAGCCAGGTTTCCGTGTGCCATTTGCCAGCGTGTGGGAGCTCTGCGCGTGTGTGAGGGTGTTTGTAGAAGAGGGCAGTTTCCTTTCAAATGGCCTTAGGAAGGGAAAAGAGTACTCCCTCCAGCCCCTAGGTAGCCTTGGCCAGGGATGTGGGCCAAGAACAGTCTGTGGAGCTGGCCAACTTGTGGCATCCACTCCAAATAGCAGAGACCCAGTCACGCCTGCTTCTGGTCCTCCCTGCCCTCAGTATTTGGTTTTGTACACCAAAGATGATCTGGCCCATCTTCCTCCCAGAGGCACAACAGTAACATGTTCCTCTGTCAGCCTGTGAAGGCATGCAGGGTTCTGAAGCCACAGACTCAGTCTCCCCAAGTCAGCAATCTCTTTCTCTCTCTCTCCTCAAACTTCATCGCATTCATAGAAGCTGCTTGCAGGGTCGCCGGGCTAACCAGGGTGATCGGCGAACTTTACCGTACAGTACCTCAGTCTAGCTGTCAGATCACCCCTTTTGCTGTAGCCTCTGTTGAGGTTTTTATATTTGTGATCATTGGTAATTCAGTGTCCTATGAAGTGGGCACAGCTCCCCACAGAGAGCAAGTTGTCAGCAGGTCTCTGTGCACTGGTATTGGGGCAGGGCAGTGCCCTGGGGGTAAGCTAGGTGGCTCAGGGAGTGGCAGAAGGGCCATTTTTCCCTCTGCCAAAAAGACTTCCTTGGATTTGTAGATGTTGACCCAGAGTCCTCTGTCCCCTCCTGAAGAGGATTTTCTTACTGGTTTCTACTGAAGGGGAGGTAGGGGAGGAGGAAAAAAGGACCATGTGTGATGCTGTTAGACAAGACACTGACGCTGATTATGGAGGGTCTCCTGCAGGCCCTTGTGGGCTCCTTGGCAAGGCCCCAGGCTGGGAAGGAGCTCCCCCCACTGCCCATCCTGCCCGCTTTGTGGCGGGTAGAGTCAGTGACAGGGAGGCAGCCCTCCTTTTGTGTATATAGAGTGAGCTGATTTGGGCTCAGGAAAACCTAGTCGCTTGTTGCTCTCGTCTGTGACATTTTTGTACACTGGTTTGCTACTCATGGCAAGAAACAGACAAAGCCCCATGAAAAATAAAACAAAACAAAAGTCATTTCAAACAAAGCTGTTGTTTTGAAAACTCTTGCTTTCTTTTGGTGTCCATTTTGTGTTCTATTTTAAAGAATCTTTCATTTATATTGGTGTTATTGTAGTGAAGAGAATGTGATAGGCTGATCTGTAATGGTTTCTGTCAGGAGCTTAGCAAATGCCTCTGCCCCTCTTCCCCTACCCCTGTCCTTCCTCAGTTCCCAGCTGGGATTGCTATGCACTGGGCAGACCCGTCACTGTCTCCCCTGAACCCCCACACAGTGGCTTCCCTTAGAACCAGTCTTTGTACTCTCCCTAAACAGCAGCAGGCTTAGGATTTTTGTCAGGCTGGTTCTTGCGTGCTCTGTGCCCCCACCAGTTTGCTCACCTCTTGGGGCATTTTGTAATGTGTTTTCTCTGTCTTGTAAAACCTTTTGATTGTACCGAAATGGTATCTGCAGTCGCCTTTGGAAATAAATGGTCATTAATTTGTGTACTTAGCATTCTGAATTTTAGTCTCAGGTGTTTCTGTTGTTGAAGATCCTTGAATGAAAAGGAACCCTCACCATGGGGCTTACTGTTATAATGTTTCTTCATTTACTGTTATTAAAAGATTTATGAG</dnaseq>| | sequence = <dnaseq>CCAGTCTATAGGCTTCACAAGGAGCCATGGCCTGTATTTGGGGCATTGGGGAGCATAAGGCATCTGAACTGGTCCAGATCTCACTCTTATCTTGGGCCAAGCCAACGTGGAGAGAAGCAACCCAACCAGACTCTTGGCAGCCTGCCTTACAGGGTAGCCCACCTTATAGGGTAGCCCTCATATCTGCCCTGTGCCGGCCCTCTACTGCCCCAGCTTTGGTACAGGAGTGAGGGAGAAGCTGGAGCTTGCACACCCAGTGGCCAGTGGGGCTGTCTTCCCAGCTCCTCCTCAGGGCTTTCCTGTCAGTGCCAAGCCAGTTCCCCAGCCAGGTTTCCGTGTGCCATTTGCCAGCGTGTGGGAGCTCTGCGCGTGTGTGAGGGTGTTTGTAGAAGAGGGCAGTTTCCTTTCAAATGGCCTTAGGAAGGGAAAAGAGTACTCCCTCCAGCCCCTAGGTAGCCTTGGCCAGGGATGTGGGCCAAGAACAGTCTGTGGAGCTGGCCAACTTGTGGCATCCACTCCAAATAGCAGAGACCCAGTCACGCCTGCTTCTGGTCCTCCCTGCCCTCAGTATTTGGTTTTGTACACCAAAGATGATCTGGCCCATCTTCCTCCCAGAGGCACAACAGTAACATGTTCCTCTGTCAGCCTGTGAAGGCATGCAGGGTTCTGAAGCCACAGACTCAGTCTCCCCAAGTCAGCAATCTCTTTCTCTCTCTCTCCTCAAACTTCATCGCATTCATAGAAGCTGCTTGCAGGGTCGCCGGGCTAACCAGGGTGATCGGCGAACTTTACCGTACAGTACCTCAGTCTAGCTGTCAGATCACCCCTTTTGCTGTAGCCTCTGTTGAGGTTTTTATATTTGTGATCATTGGTAATTCAGTGTCCTATGAAGTGGGCACAGCTCCCCACAGAGAGCAAGTTGTCAGCAGGTCTCTGTGCACTGGTATTGGGGCAGGGCAGTGCCCTGGGGGTAAGCTAGGTGGCTCAGGGAGTGGCAGAAGGGCCATTTTTCCCTCTGCCAAAAAGACTTCCTTGGATTTGTAGATGTTGACCCAGAGTCCTCTGTCCCCTCCTGAAGAGGATTTTCTTACTGGTTTCTACTGAAGGGGAGGTAGGGGAGGAGGAAAAAAGGACCATGTGTGATGCTGTTAGACAAGACACTGACGCTGATTATGGAGGGTCTCCTGCAGGCCCTTGTGGGCTCCTTGGCAAGGCCCCAGGCTGGGAAGGAGCTCCCCCCACTGCCCATCCTGCCCGCTTTGTGGCGGGTAGAGTCAGTGACAGGGAGGCAGCCCTCCTTTTGTGTATATAGAGTGAGCTGATTTGGGCTCAGGAAAACCTAGTCGCTTGTTGCTCTCGTCTGTGACATTTTTGTACACTGGTTTGCTACTCATGGCAAGAAACAGACAAAGCCCCATGAAAAATAAAACAAAACAAAAGTCATTTCAAACAAAGCTGTTGTTTTGAAAACTCTTGCTTTCTTTTGGTGTCCATTTTGTGTTCTATTTTAAAGAATCTTTCATTTATATTGGTGTTATTGTAGTGAAGAGAATGTGATAGGCTGATCTGTAATGGTTTCTGTCAGGAGCTTAGCAAATGCCTCTGCCCCTCTTCCCCTACCCCTGTCCTTCCTCAGTTCCCAGCTGGGATTGCTATGCACTGGGCAGACCCGTCACTGTCTCCCCTGAACCCCCACACAGTGGCTTCCCTTAGAACCAGTCTTTGTACTCTCCCTAAACAGCAGCAGGCTTAGGATTTTTGTCAGGCTGGTTCTTGCGTGCTCTGTGCCCCCACCAGTTTGCTCACCTCTTGGGGCATTTTGTAATGTGTTTTCTCTGTCTTGTAAAACCTTTTGATTGTACCGAAATGGTATCTGCAGTCGCCTTTGGAAATAAATGGTCATTAATTTGTGTACTTAGCATTCTGAATTTTAGTCTCAGGTGTTTCTGTTGTTGAAGATCCTTGAATGAAAAGGAACCCTCACCATGGGGCTTACTGTTATAATGTTTCTTCATTTACTGTTATTAAAAGATTTATGAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG055098]][[Category:Transcripts]] |
Latest revision as of 02:48, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138165 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2040 nt |
Genomic location |
chrX+:109418975..109421014 |
Exon number |
1 |
Exons |
109418975..109421014 |
Genome context |
|
Sequence |
000001 CCAGTCTATA GGCTTCACAA GGAGCCATGG CCTGTATTTG GGGCATTGGG GAGCATAAGG CATCTGAACT GGTCCAGATC 000080
000081 TCACTCTTAT CTTGGGCCAA GCCAACGTGG AGAGAAGCAA CCCAACCAGA CTCTTGGCAG CCTGCCTTAC AGGGTAGCCC 000160 000161 ACCTTATAGG GTAGCCCTCA TATCTGCCCT GTGCCGGCCC TCTACTGCCC CAGCTTTGGT ACAGGAGTGA GGGAGAAGCT 000240 000241 GGAGCTTGCA CACCCAGTGG CCAGTGGGGC TGTCTTCCCA GCTCCTCCTC AGGGCTTTCC TGTCAGTGCC AAGCCAGTTC 000320 000321 CCCAGCCAGG TTTCCGTGTG CCATTTGCCA GCGTGTGGGA GCTCTGCGCG TGTGTGAGGG TGTTTGTAGA AGAGGGCAGT 000400 000401 TTCCTTTCAA ATGGCCTTAG GAAGGGAAAA GAGTACTCCC TCCAGCCCCT AGGTAGCCTT GGCCAGGGAT GTGGGCCAAG 000480 000481 AACAGTCTGT GGAGCTGGCC AACTTGTGGC ATCCACTCCA AATAGCAGAG ACCCAGTCAC GCCTGCTTCT GGTCCTCCCT 000560 000561 GCCCTCAGTA TTTGGTTTTG TACACCAAAG ATGATCTGGC CCATCTTCCT CCCAGAGGCA CAACAGTAAC ATGTTCCTCT 000640 000641 GTCAGCCTGT GAAGGCATGC AGGGTTCTGA AGCCACAGAC TCAGTCTCCC CAAGTCAGCA ATCTCTTTCT CTCTCTCTCC 000720 000721 TCAAACTTCA TCGCATTCAT AGAAGCTGCT TGCAGGGTCG CCGGGCTAAC CAGGGTGATC GGCGAACTTT ACCGTACAGT 000800 000801 ACCTCAGTCT AGCTGTCAGA TCACCCCTTT TGCTGTAGCC TCTGTTGAGG TTTTTATATT TGTGATCATT GGTAATTCAG 000880 000881 TGTCCTATGA AGTGGGCACA GCTCCCCACA GAGAGCAAGT TGTCAGCAGG TCTCTGTGCA CTGGTATTGG GGCAGGGCAG 000960 000961 TGCCCTGGGG GTAAGCTAGG TGGCTCAGGG AGTGGCAGAA GGGCCATTTT TCCCTCTGCC AAAAAGACTT CCTTGGATTT 001040 001041 GTAGATGTTG ACCCAGAGTC CTCTGTCCCC TCCTGAAGAG GATTTTCTTA CTGGTTTCTA CTGAAGGGGA GGTAGGGGAG 001120 001121 GAGGAAAAAA GGACCATGTG TGATGCTGTT AGACAAGACA CTGACGCTGA TTATGGAGGG TCTCCTGCAG GCCCTTGTGG 001200 001201 GCTCCTTGGC AAGGCCCCAG GCTGGGAAGG AGCTCCCCCC ACTGCCCATC CTGCCCGCTT TGTGGCGGGT AGAGTCAGTG 001280 001281 ACAGGGAGGC AGCCCTCCTT TTGTGTATAT AGAGTGAGCT GATTTGGGCT CAGGAAAACC TAGTCGCTTG TTGCTCTCGT 001360 001361 CTGTGACATT TTTGTACACT GGTTTGCTAC TCATGGCAAG AAACAGACAA AGCCCCATGA AAAATAAAAC AAAACAAAAG 001440 001441 TCATTTCAAA CAAAGCTGTT GTTTTGAAAA CTCTTGCTTT CTTTTGGTGT CCATTTTGTG TTCTATTTTA AAGAATCTTT 001520 001521 CATTTATATT GGTGTTATTG TAGTGAAGAG AATGTGATAG GCTGATCTGT AATGGTTTCT GTCAGGAGCT TAGCAAATGC 001600 001601 CTCTGCCCCT CTTCCCCTAC CCCTGTCCTT CCTCAGTTCC CAGCTGGGAT TGCTATGCAC TGGGCAGACC CGTCACTGTC 001680 001681 TCCCCTGAAC CCCCACACAG TGGCTTCCCT TAGAACCAGT CTTTGTACTC TCCCTAAACA GCAGCAGGCT TAGGATTTTT 001760 001761 GTCAGGCTGG TTCTTGCGTG CTCTGTGCCC CCACCAGTTT GCTCACCTCT TGGGGCATTT TGTAATGTGT TTTCTCTGTC 001840 001841 TTGTAAAACC TTTTGATTGT ACCGAAATGG TATCTGCAGT CGCCTTTGGA AATAAATGGT CATTAATTTG TGTACTTAGC 001920 001921 ATTCTGAATT TTAGTCTCAG GTGTTTCTGT TGTTGAAGAT CCTTGAATGA AAAGGAACCC TCACCATGGG GCTTACTGTT 002000 002001 ATAATGTTTC TTCATTTACT GTTATTAAAA GATTTATGAG |
Predicted Small Protein
Name | NONHSAT138165_smProtein_26:229 |
Length | 68 |
Molecular weight | 7343.3811 |
Aromaticity | 0.0746268656716 |
Instability index | 49.3776119403 |
Isoelectric point | 6.54205322266 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.029706176765 |
Amino acid sequence | MACIWGIGEHKASELVQISLLSWAKPTWREATQPDSWQPALQGSPPYRVALISALCRPST APALVQE |
Secondary structure | LLEEELLLLLLHHHHHHHHHHHHLLLLHHHLLLLLLLLLLLLLLLHHHHHHHHHHLLLLL LLLLLLL |
PRMN | - |
PiMo | - |