Difference between revisions of "NONHSAT138550"
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sequence = <dnaseq>cgcttgaacccgggaggcggaggttcagtgagccgagatcgtgccattgtactccagcctgggctacaagagcgaaactccgtctcaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagataagtattctctaagtccttgaaaactggctctgtgtgttggggcactctttcaactagccaggctgtagtcttcacttctagcttgcaaggggcctgaaagctagtgagatctgagaccttaagctcttctcaggcattttctgcataattgtccagccctgcccatgtgcatggctttcttatttctctagtgtatacaagaacattttaaagttcttattcccccaagtatttcctttcatagcctcttccttcccatgcttttccatctgcttattgtttattttaactgttgtcccttgcctcagattcttatagccagtacttgtgtctttaagttttttcaacacatgcccctcaggagttgttccaaacttggaaacactccaagtgaggcaaaacaaaaagcaagctcttacaccaatcctttagggagccaaaagacagatcaaactggaatgcaacaattctttgagaataagttctgtattatacctatgcacgagggtaggagctatactgaaggcactgtggaggctgggggatggtagacaggtaatttaaaatgccgcagctctcttgctctctcaccacaaagcagtcacttatttcttcaccaaggcttccctgggtgttgtaagtttttgacaagctctagagttctgtaaaagtggattctgacacttctttctttctttctttctttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggagcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgtctcagcctcccgagtacctgggagtacag</dnaseq>| | sequence = <dnaseq>cgcttgaacccgggaggcggaggttcagtgagccgagatcgtgccattgtactccagcctgggctacaagagcgaaactccgtctcaaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagataagtattctctaagtccttgaaaactggctctgtgtgttggggcactctttcaactagccaggctgtagtcttcacttctagcttgcaaggggcctgaaagctagtgagatctgagaccttaagctcttctcaggcattttctgcataattgtccagccctgcccatgtgcatggctttcttatttctctagtgtatacaagaacattttaaagttcttattcccccaagtatttcctttcatagcctcttccttcccatgcttttccatctgcttattgtttattttaactgttgtcccttgcctcagattcttatagccagtacttgtgtctttaagttttttcaacacatgcccctcaggagttgttccaaacttggaaacactccaagtgaggcaaaacaaaaagcaagctcttacaccaatcctttagggagccaaaagacagatcaaactggaatgcaacaattctttgagaataagttctgtattatacctatgcacgagggtaggagctatactgaaggcactgtggaggctgggggatggtagacaggtaatttaaaatgccgcagctctcttgctctctcaccacaaagcagtcacttatttcttcaccaaggcttccctgggtgttgtaagtttttgacaagctctagagttctgtaaaagtggattctgacacttctttctttctttctttctttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggagcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgtctcagcctcccgagtacctgggagtacag</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG055321]] | + | [[Category:Intergenic]][[Category:NONHSAG055321]][[Category:Transcripts]] |
Latest revision as of 02:50, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT138550 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
970 nt |
| Genomic location |
chrX+:130934802..130935771 |
| Exon number |
1 |
| Exons |
130934802..130935771 |
| Genome context |
|
| Sequence |
000001 cgcttgaacc cgggaggcgg aggttcagtg agccgagatc gtgccattgt actccagcct gggctacaag agcgaaactc 000080
000081 cgtctcaaaa aaaaaaaaag aaagaaagaa agaaagaaag aaagaaagaa agataagtat tctctaagtc cttgaaaact 000160 000161 ggctctgtgt gttggggcac tctttcaact agccaggctg tagtcttcac ttctagcttg caaggggcct gaaagctagt 000240 000241 gagatctgag accttaagct cttctcaggc attttctgca taattgtcca gccctgccca tgtgcatggc tttcttattt 000320 000321 ctctagtgta tacaagaaca ttttaaagtt cttattcccc caagtatttc ctttcatagc ctcttccttc ccatgctttt 000400 000401 ccatctgctt attgtttatt ttaactgttg tcccttgcct cagattctta tagccagtac ttgtgtcttt aagttttttc 000480 000481 aacacatgcc cctcaggagt tgttccaaac ttggaaacac tccaagtgag gcaaaacaaa aagcaagctc ttacaccaat 000560 000561 cctttaggga gccaaaagac agatcaaact ggaatgcaac aattctttga gaataagttc tgtattatac ctatgcacga 000640 000641 gggtaggagc tatactgaag gcactgtgga ggctggggga tggtagacag gtaatttaaa atgccgcagc tctcttgctc 000720 000721 tctcaccaca aagcagtcac ttatttcttc accaaggctt ccctgggtgt tgtaagtttt tgacaagctc tagagttctg 000800 000801 taaaagtgga ttctgacact tctttctttc tttctttctt tttttgagac ggagtctcgc tctgtcgccc aggctggagt 000880 000881 gcagtggagc gatctcggct cactgcaagc tccgcctccc aggttcacgc cattctcctg tctcagcctc ccgagtacct 000960 000961 gggagtacag |
Predicted Small Protein
| Name | NONHSAT138550_smProtein_392:685 |
| Length | 98 |
| Molecular weight | 10957.5784 |
| Aromaticity | 0.123711340206 |
| Instability index | 47.1381443299 |
| Isoelectric point | 8.32513427734 |
| Runs | 15 |
| Runs residual | 0.0231004200076 |
| Runs probability | 0.0495142201025 |
| Amino acid sequence | MLFHLLIVYFNCCPLPQILIASTCVFKFFQHMPLRSCSKLGNTPSEAKQKASSYTNPLGS QKTDQTGMQQFFENKFCIIPMHEGRSYTEGTVEAGGW |
| Secondary structure | LEEEEEEEEEELLLLLEEEEEEEEEEEELEELLLLLLLLLLLLHHHHHHHHHHLLLLLLL LLLLLLHHHHHHHLLEEEELLLLLLLLLLLEEELLLL |
| PRMN | - |
| PiMo | - |
