Difference between revisions of "NONHSAT138645"
| Line 42: | Line 42: | ||
sequence = <dnaseq>GGACGCGGAAGAACTGGCCCAGCGGAGGTTCCCGCTTCTGAAGCGTGGGAGGCGGAAGAGACTGCAGcccccgcccccgtccccaagcctccgccccttagcccccgcccccAGCTGCCAGTCCCCAGCAGCTCAGTCCTGCAGTGAGAGTCTTGGGAGTCCATAGCTAAGCACCAGGAGCTGAGCACTGCCCGCTGTGCCTGCCTGCAAGTCTGACATGGCTCAGGAGAAAATGGAGCTGGACCTTGAGCCTGACACATCTTATGGGGGAACCCTGAGGAGATCCAGCAGCGCTCCCCTAATCCATGGGCTCAGTGACCTTTCACAGGTTTTCCAACCTTACACACTTAGAACTCGGAGGAATAGTACAACAATTATGAGCCGTCACAGCCTGTTGCTGTCATCCTCACCTAATCGTATTCCTAGTAGCAGACTGCATCAGATCAAAAGGGAAGAAGGCCTGGATATGGTGAACAGAGAAACTGCACATGAAAGGGAAATGCAAACGGCAATGCAGATAAGCCAATCATGGGATGAGAGCTTGAGCCTGAGTGACAGTGATTTTGACAAGCCGGAGAAATTATATTCTCCTAAGAGAATTGACTTCACTCCAGTTTCTCCAGCACCTTCACCCACCAGGGGATTCGGAAAGATGTTCGTGAGCAGCAGTGGATTGCCACCAAGTCCAGTTCCCAGTCCAAGACGATTTTCAAGGAGAAGTCAGAGTCCAGTCAAGTGCATTAGACCCAGTGTTCTTGGTCCTCTTAAAAGAAAAGGTGAAATGGAGACAGAAAGTCAGCCCAAGAGACTCTTCCAAGGCACTACCAATATGTTATCTCCAGATGCCGCGCAACTGTCTGATCTCAGTTCATGTTCAGATATTTTGGATGGCAGTAGTAGCAGCAGTGGCTTATCCTCAGACCCGCTGGCTAAAGGCAGCGCTACCGCAGAGTCTCCAGTAGCATGCTCCAATTCATGCTCTTCGTTCATCTTGATGGATGATCTCTCACCCAAGTGACTTAACCATTTCTGATTCAACGTTTTAACTGCTGTTTCCTACATAAAATGTTTAGTGGGG</dnaseq>| | sequence = <dnaseq>GGACGCGGAAGAACTGGCCCAGCGGAGGTTCCCGCTTCTGAAGCGTGGGAGGCGGAAGAGACTGCAGcccccgcccccgtccccaagcctccgccccttagcccccgcccccAGCTGCCAGTCCCCAGCAGCTCAGTCCTGCAGTGAGAGTCTTGGGAGTCCATAGCTAAGCACCAGGAGCTGAGCACTGCCCGCTGTGCCTGCCTGCAAGTCTGACATGGCTCAGGAGAAAATGGAGCTGGACCTTGAGCCTGACACATCTTATGGGGGAACCCTGAGGAGATCCAGCAGCGCTCCCCTAATCCATGGGCTCAGTGACCTTTCACAGGTTTTCCAACCTTACACACTTAGAACTCGGAGGAATAGTACAACAATTATGAGCCGTCACAGCCTGTTGCTGTCATCCTCACCTAATCGTATTCCTAGTAGCAGACTGCATCAGATCAAAAGGGAAGAAGGCCTGGATATGGTGAACAGAGAAACTGCACATGAAAGGGAAATGCAAACGGCAATGCAGATAAGCCAATCATGGGATGAGAGCTTGAGCCTGAGTGACAGTGATTTTGACAAGCCGGAGAAATTATATTCTCCTAAGAGAATTGACTTCACTCCAGTTTCTCCAGCACCTTCACCCACCAGGGGATTCGGAAAGATGTTCGTGAGCAGCAGTGGATTGCCACCAAGTCCAGTTCCCAGTCCAAGACGATTTTCAAGGAGAAGTCAGAGTCCAGTCAAGTGCATTAGACCCAGTGTTCTTGGTCCTCTTAAAAGAAAAGGTGAAATGGAGACAGAAAGTCAGCCCAAGAGACTCTTCCAAGGCACTACCAATATGTTATCTCCAGATGCCGCGCAACTGTCTGATCTCAGTTCATGTTCAGATATTTTGGATGGCAGTAGTAGCAGCAGTGGCTTATCCTCAGACCCGCTGGCTAAAGGCAGCGCTACCGCAGAGTCTCCAGTAGCATGCTCCAATTCATGCTCTTCGTTCATCTTGATGGATGATCTCTCACCCAAGTGACTTAACCATTTCTGATTCAACGTTTTAACTGCTGTTTCCTACATAAAATGTTTAGTGGGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG055357]] | + | [[Category:Sense]][[Category:NONHSAG055357]][[Category:Transcripts]] |
Latest revision as of 02:50, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT138645 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1078 nt |
| Genomic location |
chrX-:133906109..133931217 |
| Exon number |
11 |
| Exons |
133906109..133906313,133915851..133915947,133919916..133919977,133921502..133921563,133922760..133922861,133923115..133923169,133923253..133923296,133923610..133923666,133927845..133927923,133930138..133930385,133931151..133931217 |
| Genome context |
|
| Sequence |
000001 GGACGCGGAA GAACTGGCCC AGCGGAGGTT CCCGCTTCTG AAGCGTGGGA GGCGGAAGAG ACTGCAGccc ccgcccccgt 000080
000081 ccccaagcct ccgcccctta gcccccgccc ccAGCTGCCA GTCCCCAGCA GCTCAGTCCT GCAGTGAGAG TCTTGGGAGT 000160 000161 CCATAGCTAA GCACCAGGAG CTGAGCACTG CCCGCTGTGC CTGCCTGCAA GTCTGACATG GCTCAGGAGA AAATGGAGCT 000240 000241 GGACCTTGAG CCTGACACAT CTTATGGGGG AACCCTGAGG AGATCCAGCA GCGCTCCCCT AATCCATGGG CTCAGTGACC 000320 000321 TTTCACAGGT TTTCCAACCT TACACACTTA GAACTCGGAG GAATAGTACA ACAATTATGA GCCGTCACAG CCTGTTGCTG 000400 000401 TCATCCTCAC CTAATCGTAT TCCTAGTAGC AGACTGCATC AGATCAAAAG GGAAGAAGGC CTGGATATGG TGAACAGAGA 000480 000481 AACTGCACAT GAAAGGGAAA TGCAAACGGC AATGCAGATA AGCCAATCAT GGGATGAGAG CTTGAGCCTG AGTGACAGTG 000560 000561 ATTTTGACAA GCCGGAGAAA TTATATTCTC CTAAGAGAAT TGACTTCACT CCAGTTTCTC CAGCACCTTC ACCCACCAGG 000640 000641 GGATTCGGAA AGATGTTCGT GAGCAGCAGT GGATTGCCAC CAAGTCCAGT TCCCAGTCCA AGACGATTTT CAAGGAGAAG 000720 000721 TCAGAGTCCA GTCAAGTGCA TTAGACCCAG TGTTCTTGGT CCTCTTAAAA GAAAAGGTGA AATGGAGACA GAAAGTCAGC 000800 000801 CCAAGAGACT CTTCCAAGGC ACTACCAATA TGTTATCTCC AGATGCCGCG CAACTGTCTG ATCTCAGTTC ATGTTCAGAT 000880 000881 ATTTTGGATG GCAGTAGTAG CAGCAGTGGC TTATCCTCAG ACCCGCTGGC TAAAGGCAGC GCTACCGCAG AGTCTCCAGT 000960 000961 AGCATGCTCC AATTCATGCT CTTCGTTCAT CTTGATGGAT GATCTCTCAC CCAAGTGACT TAACCATTTC TGATTCAACG 001040 001041 TTTTAACTGC TGTTTCCTAC ATAAAATGTT TAGTGGGG |
Predicted Small Protein
| Name | NONHSAT138645_smProtein_842:961 |
| Length | 40 |
| Molecular weight | 4438.2915 |
| Aromaticity | 0.102564102564 |
| Instability index | 88.9564102564 |
| Isoelectric point | 10.0523071289 |
| Runs | 6 |
| Runs residual | 0.0148944193062 |
| Runs probability | 0.0415121003357 |
| Amino acid sequence | MPRNCLISVHVQIFWMAVVAAVAYPQTRWLKAALPQSLQ |
| Secondary structure | LLLLLEEHHHHHHHHHHHHHHHHLLHHHHHHHHLLLLLL |
| PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
| PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |
