Difference between revisions of "NONHSAT138975"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>cgaggCTGCACCACCCTTATCAGGTTCCAGTTCtcggtgcgccccgttctgcaagacactctcctgtggtcagccctggtctgcagaggattcccgcgctggatctctgaaggatgctggcgccctctctgcagcacattcctgatgcccttgctgacacgtgtcctctgggccctctcctgaaacctgattctccggggtgtcttctggcctcacctcttctgtccagttccaACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaaggtctggcaactagcctgccatcttgtgcctggagccgcctgcgtgccacctactcccgaagatgggaaccttgttgccagttgggcagatgcggggcaatcctgtaccaagaccccattttaccacctgctttctcagaccactctggaacccactgtctcagattgtgtcctccaggaagcagaccatgagagggagttggcagggccaaagatttactggggctaactaacactcaggaaagggataggaaggaaacagggctggagagcaggttgagcccgacctgacagtctcgagcagcccaacagggaggtgtggagcaagggttgcccactagaggggcctgcattgggtaCGGGTGATGGGGTCCACATGgtacctggcatatagcaggctgtgcaatccatattaactgactggataaatTAATGCCCAGAAAAGGTGCCCTGGAGAATGGGTGTGTGCTGAACACAATAGGGAAGGGCCCAGCATCTGCCTTGGCATAGGCAGAACTGTGCTGTGCCCTGCAACAGGCCACCTGAGAGCTGCTTTGATCTTGTGTGTACATTAGATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAG</dnaseq>| | sequence = <dnaseq>cgaggCTGCACCACCCTTATCAGGTTCCAGTTCtcggtgcgccccgttctgcaagacactctcctgtggtcagccctggtctgcagaggattcccgcgctggatctctgaaggatgctggcgccctctctgcagcacattcctgatgcccttgctgacacgtgtcctctgggccctctcctgaaacctgattctccggggtgtcttctggcctcacctcttctgtccagttccaACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaaggtctggcaactagcctgccatcttgtgcctggagccgcctgcgtgccacctactcccgaagatgggaaccttgttgccagttgggcagatgcggggcaatcctgtaccaagaccccattttaccacctgctttctcagaccactctggaacccactgtctcagattgtgtcctccaggaagcagaccatgagagggagttggcagggccaaagatttactggggctaactaacactcaggaaagggataggaaggaaacagggctggagagcaggttgagcccgacctgacagtctcgagcagcccaacagggaggtgtggagcaagggttgcccactagaggggcctgcattgggtaCGGGTGATGGGGTCCACATGgtacctggcatatagcaggctgtgcaatccatattaactgactggataaatTAATGCCCAGAAAAGGTGCCCTGGAGAATGGGTGTGTGCTGAACACAATAGGGAAGGGCCCAGCATCTGCCTTGGCATAGGCAGAACTGTGCTGTGCCCTGCAACAGGCCACCTGAGAGCTGCTTTGATCTTGTGTGTACATTAGATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055499]][[Category:Transcripts]] |
Latest revision as of 02:52, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT138975 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1498 nt |
| Genomic location |
chrX+:149113543..149115552 |
| Exon number |
3 |
| Exons |
149113543..149113776,149114076..149114246,149114460..149115552 |
| Genome context |
|
| Sequence |
000001 cgaggCTGCA CCACCCTTAT CAGGTTCCAG TTCtcggtgc gccccgttct gcaagacact ctcctgtggt cagccctggt 000080
000081 ctgcagagga ttcccgcgct ggatctctga aggatgctgg cgccctctct gcagcacatt cctgatgccc ttgctgacac 000160 000161 gtgtcctctg ggccctctcc tgaaacctga ttctccgggg tgtcttctgg cctcacctct tctgtccagt tccaACCCAG 000240 000241 CACACCCTGC CTGCATGGCG CTGCGCTGCA CCTTCACTCT GGTCACGGGT CTGGCAGTCA GCTCaccaat tcctcctgct 000320 000321 tccctgggac ttgccggctt ttagcactgc aattcactca gcaaactggg actgttggtc accctacctg gcagccagtg 000400 000401 ataagggctg gtgtcattgg catgacagac ctgccttggc tgagcgttca cctgtctttg gagttcagcc accttagcaa 000480 000481 gtcctgggtt tgttcttcag actttgctgc tcgcccattg cctggatcgg gggctacttt gtaaaccacc aggaagactc 000560 000561 cagtgtttct ggttaatttt tagatgtttg ttaattgctc ttggtctctc attaatcccc tgtgggtcat ccaggaaaca 000640 000641 tactcaccac tgtctgttct ctgagttttc atttccaggc atccgccctg cctggatctc ctcacctgcc aggaacttcc 000720 000721 tctccacaag ccggccatcc cagcaaaagt tctaacacca aaggtctggc aactagcctg ccatcttgtg cctggagccg 000800 000801 cctgcgtgcc acctactccc gaagatggga accttgttgc cagttgggca gatgcggggc aatcctgtac caagacccca 000880 000881 ttttaccacc tgctttctca gaccactctg gaacccactg tctcagattg tgtcctccag gaagcagacc atgagaggga 000960 000961 gttggcaggg ccaaagattt actggggcta actaacactc aggaaaggga taggaaggaa acagggctgg agagcaggtt 001040 001041 gagcccgacc tgacagtctc gagcagccca acagggaggt gtggagcaag ggttgcccac tagaggggcc tgcattgggt 001120 001121 aCGGGTGATG GGGTCCACAT Ggtacctggc atatagcagg ctgtgcaatc catattaact gactggataa atTAATGCCC 001200 001201 AGAAAAGGTG CCCTGGAGAA TGGGTGTGTG CTGAACACAA TAGGGAAGGG CCCAGCATCT GCCTTGGCAT AGGCAGAACT 001280 001281 GTGCTGTGCC CTGCAACAGG CCACCTGAGA GCTGCTTTGA TCTTGTGTGT ACATTAGATG ACTGCCAGGG GCATGAAGGG 001360 001361 GATGTGCTTC CAGGGCATTT GCTGGCAGGG CGTCTCGTGA TCTCTTGGTA TTGGTGTGAG CACAGCCTGG CAGGAGAGGG 001440 001441 CAGATCTCCA TGCAAAGTAT GTCAGAAAGC AGATGGAAGC CAGGCCCCCT CCTGAAAG |
Predicted Small Protein
| Name | NONHSAT138975_smProtein_113:343 |
| Length | 77 |
| Molecular weight | 7604.9275 |
| Aromaticity | 0.0263157894737 |
| Instability index | 75.7815789474 |
| Isoelectric point | 5.94317626953 |
| Runs | 10 |
| Runs residual | 0.00983061101028 |
| Runs probability | 0.0679738562092 |
| Amino acid sequence | MLAPSLQHIPDALADTCPLGPLLKPDSPGCLLASPLLSSSNPAHPACMALRCTFTLVTGL AVSSPIPPASLGLAGF |
| Secondary structure | LLLLLLLLLHHHHHLLLLLLLLLLLLLLLEEELLLLLLLLLLLLHHHHHHHHHEEEEELL EELLLLLLLLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTooooooooooooo |
