Difference between revisions of "NONHSAT139432"
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sequence = <dnaseq>ATGGTGGAAGCAGATGGGCCTGGCAATCTTTTCACTGGTGTCCTCCATTTAGAAACCAATGAAAAGTCGCTTAAAGCAGTATTTGGGAAATATGGTCCCATATTGGAAGTTTTTCTGATAAATGATTGGGAAACCAGCAATTTCAGATGCTTTGCATTTATTCTGAGAATGTTGCAGATGAGTCCGTCCCATGTCACATGGATGAGGGAATTATGGAGGTCCTCTATGCAGAGAGCCAGTCTCTTACCAGAGAAATGACCATGTATCACCAAGAGATGAGAGTTATGCAACTAAGGATAATTCATACAAATTCCTGAGACACCAGAGATTATGCTCCATCATCTAGAGATTATGGATACCGTGATTATGGTCGTTCTAGTCAGGATGAGCATTCCTCTAGAGGATATAGTGACCATGATGACTATAGTGGGGGCCTTGGTAGAGATCATTCTGAACATCCAAATGGGAGTTCTTACAGAGATGCATATCAGAGTTATGGGACCTTCTATGGTGCACCACCTGCATGATGGCCTTGGATGAGTTACGGTGGAAGTAGTCGCTATGATTATAACAGCACATGAGATAGATATGTAGGAGCTGGGAGAGTTACTCATGGAGCTGTGGTGATTTATATTCCTGTGGTCATGAGCACTGTGGCAGAAAAGAATGAAGGAATCTACCTTCTCTGGATAGGGTACACCCTGCTCCTCATGAAGGATATGGTAGCTCAAGTTATGGGGCATCTACAGGAAGCGGTGGGGGAAGCCAATATGAAAAAGGAGACTGAAGCGATATTAAAGGAGATATTAA</dnaseq>| | sequence = <dnaseq>ATGGTGGAAGCAGATGGGCCTGGCAATCTTTTCACTGGTGTCCTCCATTTAGAAACCAATGAAAAGTCGCTTAAAGCAGTATTTGGGAAATATGGTCCCATATTGGAAGTTTTTCTGATAAATGATTGGGAAACCAGCAATTTCAGATGCTTTGCATTTATTCTGAGAATGTTGCAGATGAGTCCGTCCCATGTCACATGGATGAGGGAATTATGGAGGTCCTCTATGCAGAGAGCCAGTCTCTTACCAGAGAAATGACCATGTATCACCAAGAGATGAGAGTTATGCAACTAAGGATAATTCATACAAATTCCTGAGACACCAGAGATTATGCTCCATCATCTAGAGATTATGGATACCGTGATTATGGTCGTTCTAGTCAGGATGAGCATTCCTCTAGAGGATATAGTGACCATGATGACTATAGTGGGGGCCTTGGTAGAGATCATTCTGAACATCCAAATGGGAGTTCTTACAGAGATGCATATCAGAGTTATGGGACCTTCTATGGTGCACCACCTGCATGATGGCCTTGGATGAGTTACGGTGGAAGTAGTCGCTATGATTATAACAGCACATGAGATAGATATGTAGGAGCTGGGAGAGTTACTCATGGAGCTGTGGTGATTTATATTCCTGTGGTCATGAGCACTGTGGCAGAAAAGAATGAAGGAATCTACCTTCTCTGGATAGGGTACACCCTGCTCCTCATGAAGGATATGGTAGCTCAAGTTATGGGGCATCTACAGGAAGCGGTGGGGGAAGCCAATATGAAAAAGGAGACTGAAGCGATATTAAAGGAGATATTAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG055749]] | + | [[Category:Intergenic]][[Category:NONHSAG055749]][[Category:Transcripts]] |
Latest revision as of 02:54, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139432 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
810 nt |
Genomic location |
chrY+:9789162..9797032 |
Exon number |
6 |
Exons |
9789162..9789270,9789732..9789807,9795049..9795161,9796028..9796138,9796219..9796307,9796721..9797032 |
Genome context |
|
Sequence |
000001 ATGGTGGAAG CAGATGGGCC TGGCAATCTT TTCACTGGTG TCCTCCATTT AGAAACCAAT GAAAAGTCGC TTAAAGCAGT 000080
000081 ATTTGGGAAA TATGGTCCCA TATTGGAAGT TTTTCTGATA AATGATTGGG AAACCAGCAA TTTCAGATGC TTTGCATTTA 000160 000161 TTCTGAGAAT GTTGCAGATG AGTCCGTCCC ATGTCACATG GATGAGGGAA TTATGGAGGT CCTCTATGCA GAGAGCCAGT 000240 000241 CTCTTACCAG AGAAATGACC ATGTATCACC AAGAGATGAG AGTTATGCAA CTAAGGATAA TTCATACAAA TTCCTGAGAC 000320 000321 ACCAGAGATT ATGCTCCATC ATCTAGAGAT TATGGATACC GTGATTATGG TCGTTCTAGT CAGGATGAGC ATTCCTCTAG 000400 000401 AGGATATAGT GACCATGATG ACTATAGTGG GGGCCTTGGT AGAGATCATT CTGAACATCC AAATGGGAGT TCTTACAGAG 000480 000481 ATGCATATCA GAGTTATGGG ACCTTCTATG GTGCACCACC TGCATGATGG CCTTGGATGA GTTACGGTGG AAGTAGTCGC 000560 000561 TATGATTATA ACAGCACATG AGATAGATAT GTAGGAGCTG GGAGAGTTAC TCATGGAGCT GTGGTGATTT ATATTCCTGT 000640 000641 GGTCATGAGC ACTGTGGCAG AAAAGAATGA AGGAATCTAC CTTCTCTGGA TAGGGTACAC CCTGCTCCTC ATGAAGGATA 000720 000721 TGGTAGCTCA AGTTATGGGG CATCTACAGG AAGCGGTGGG GGAAGCCAAT ATGAAAAAGG AGACTGAAGC GATATTAAAG 000800 000801 GAGATATTAA |
Predicted Small Protein
Name | NONHSAT139432_smProtein_146:316 |
Length | 57 |
Molecular weight | 6595.5386 |
Aromaticity | 0.0535714285714 |
Instability index | 48.8125 |
Isoelectric point | 4.65887451172 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0383829207359 |
Amino acid sequence | MLCIYSENVADESVPCHMDEGIMEVLYAESQSLTREMTMYHQEMRVMQLRIIHTNS |
Secondary structure | LEEEEELLLLLLLLLLLLLHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |