Difference between revisions of "NONHSAT139500"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>CCACATCAACAGAACTACCAGACATCTCAGTATTCTCCCAAACAGCAGATTTCTCAGTCAGCTTACCAGTCACCACCTAGGTCTCAATGTTCTTCACCCTTCAGCTTTCCTCATCATCAAGTACAGCCTTCCCAGTTGGGCCACCCAAGTAGTCACATCTTTGTGCCACCTAATCAGGACCTCCTGGCTGTCAGAAACAGTGAAATCATTCAGTAGCATATATCCAATACACAACATCTAGCTTGCACAGAGGATTCATGAAAAAGACAGAAATTATGGTTTAACCTTCTCAAAGACCTGGAACAGTAATTAATAGCTGTCCTTCACCCATCAGTAATCAACTTTCCCCATGTAATTGGCGTTCTCTCTATGCAGGCACTGTAACACCTTGAAGTTCTTCAAGGGGAATGTATAGTCAATCAAAGCCTTCAATGAATGTGAATCCCATGCATATTACATATACACAACGAAGTGGACCTTCATGTGCCCTATCACAGTCTCCTCAGATAATACCACATCTATCTGCAGTTTTAAAAATTACTGTAGGTGGAGCAACAACTGAAAATCTTTTAAATTTCATGGACCAAGATGAATAGTTGGCAGCGCCAGAACCCGTTCAGCCAATTTTAGTGACTCCAGGTCCTGGAGGAAAAAAGagacagtttaaccatattcaccagactgctctcctactcctgacctcaagtgatctatctgcctctgttcccaaagtgttgacattacaagcatgagccacagcgtccagcTTGGAGTTAGAAAGAGACCAGTATGAATTTGAAAGATGTATTAGCCATAAACTATTTTTAATGCTTCTGAATTTTATTTAATGTAA</dnaseq>| | sequence = <dnaseq>CCACATCAACAGAACTACCAGACATCTCAGTATTCTCCCAAACAGCAGATTTCTCAGTCAGCTTACCAGTCACCACCTAGGTCTCAATGTTCTTCACCCTTCAGCTTTCCTCATCATCAAGTACAGCCTTCCCAGTTGGGCCACCCAAGTAGTCACATCTTTGTGCCACCTAATCAGGACCTCCTGGCTGTCAGAAACAGTGAAATCATTCAGTAGCATATATCCAATACACAACATCTAGCTTGCACAGAGGATTCATGAAAAAGACAGAAATTATGGTTTAACCTTCTCAAAGACCTGGAACAGTAATTAATAGCTGTCCTTCACCCATCAGTAATCAACTTTCCCCATGTAATTGGCGTTCTCTCTATGCAGGCACTGTAACACCTTGAAGTTCTTCAAGGGGAATGTATAGTCAATCAAAGCCTTCAATGAATGTGAATCCCATGCATATTACATATACACAACGAAGTGGACCTTCATGTGCCCTATCACAGTCTCCTCAGATAATACCACATCTATCTGCAGTTTTAAAAATTACTGTAGGTGGAGCAACAACTGAAAATCTTTTAAATTTCATGGACCAAGATGAATAGTTGGCAGCGCCAGAACCCGTTCAGCCAATTTTAGTGACTCCAGGTCCTGGAGGAAAAAAGagacagtttaaccatattcaccagactgctctcctactcctgacctcaagtgatctatctgcctctgttcccaaagtgttgacattacaagcatgagccacagcgtccagcTTGGAGTTAGAAAGAGACCAGTATGAATTTGAAAGATGTATTAGCCATAAACTATTTTTAATGCTTCTGAATTTTATTTAATGTAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055792]][[Category:Transcripts]] |
Latest revision as of 02:54, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139500 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
853 nt |
Genomic location |
chrY-:15271184..15273460 |
Exon number |
2 |
Exons |
15271184..15271380,15272805..15273460 |
Genome context |
|
Sequence |
000001 CCACATCAAC AGAACTACCA GACATCTCAG TATTCTCCCA AACAGCAGAT TTCTCAGTCA GCTTACCAGT CACCACCTAG 000080
000081 GTCTCAATGT TCTTCACCCT TCAGCTTTCC TCATCATCAA GTACAGCCTT CCCAGTTGGG CCACCCAAGT AGTCACATCT 000160 000161 TTGTGCCACC TAATCAGGAC CTCCTGGCTG TCAGAAACAG TGAAATCATT CAGTAGCATA TATCCAATAC ACAACATCTA 000240 000241 GCTTGCACAG AGGATTCATG AAAAAGACAG AAATTATGGT TTAACCTTCT CAAAGACCTG GAACAGTAAT TAATAGCTGT 000320 000321 CCTTCACCCA TCAGTAATCA ACTTTCCCCA TGTAATTGGC GTTCTCTCTA TGCAGGCACT GTAACACCTT GAAGTTCTTC 000400 000401 AAGGGGAATG TATAGTCAAT CAAAGCCTTC AATGAATGTG AATCCCATGC ATATTACATA TACACAACGA AGTGGACCTT 000480 000481 CATGTGCCCT ATCACAGTCT CCTCAGATAA TACCACATCT ATCTGCAGTT TTAAAAATTA CTGTAGGTGG AGCAACAACT 000560 000561 GAAAATCTTT TAAATTTCAT GGACCAAGAT GAATAGTTGG CAGCGCCAGA ACCCGTTCAG CCAATTTTAG TGACTCCAGG 000640 000641 TCCTGGAGGA AAAAAGagac agtttaacca tattcaccag actgctctcc tactcctgac ctcaagtgat ctatctgcct 000720 000721 ctgttcccaa agtgttgaca ttacaagcat gagccacagc gtccagcTTG GAGTTAGAAA GAGACCAGTA TGAATTTGAA 000800 000801 AGATGTATTA GCCATAAACT ATTTTTAATG CTTCTGAATT TTATTTAATG TAA |
Predicted Small Protein
Name | NONHSAT139500_smProtein_407:595 |
Length | 63 |
Molecular weight | 6779.6434 |
Aromaticity | 0.0483870967742 |
Instability index | 73.4774193548 |
Isoelectric point | 6.00909423828 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0440975735094 |
Amino acid sequence | MYSQSKPSMNVNPMHITYTQRSGPSCALSQSPQIIPHLSAVLKITVGGATTENLLNFMDQ DE |
Secondary structure | LLLLLLLLLLLLLLEEEEELLLLLEEELLLLLLEEEELLLEEEEEELLLLHHHHHHHHLL LL |
PRMN | - |
PiMo | - |