Difference between revisions of "NONHSAT140857"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTGTTTGTAACTGAGTTAACTTGTGTTTTCATCAACTATTTTTTAAAGCCAGTAGTAGTAGTTTGAATTTCATACACAGAGAAGCTAAGGCTTAATTAGATTCCTTTATTGTGATATAACTTGTAATAAAACCAAGATATGAACCTAGTCTGAGCATTCAGATATCCAGCTTGTCTTTCTCTTTCTTAGCTATACCAACAAACCCATACAGTTTGCCTCCAAAATGAATGAAATGTTGTCTCTTCCCTCCAGTGTTGTACATAGTCTAGTAAGTAAGAAAACTAAGCCTCCAGAAAAGGCTATTACTTCATCATTACAAACAGTAAATAATTTAATTTTAGAATTTACTTTTACTTTGAATTTTTATTTGATGGTGGAAACAAAGTTCCTATAAAAATGGAGTTGAACTAAGCAGTTTAAACACACTCATATTTGAAACATTTGTTACTTAATCACTAGGTGACTGTCTTGAGAGTAATTACTGATACTAAAACTATTTTTCTTAATCATTAATTTATCAATTCTAGGATGAAGAAGCTGCTCTGGCAGATGGTGAAGATGTTCCCTATGAGAACAGTGTTAGGCAGTTTTTGGGTGAATATAAATCATGGCAAGACAACATTCAAACAGTTCTATTTACATTAGTCCAGGCTATGGGTCAGGTTCGAAGTCAAGAACACGTTGAAATGCTCCAGGAAATCACTCCCACCTTGAAAGAACTGAAAACACAAAGTCAGAGTATCTATAATAATTTAGTGAGTTTTGCATCACCCTTAGTCACCGATGCAACAAATGAATGTTCGAGTCCAACGTCATCTGCTACTTATCAGCCATCCTTCGCTGCAGCAGTCCGGAGTAACACTGGCCAGAAGACTCAGCCTGATGTCATGTCACAGAATGCTAGAAAGCTGATCCAAAAAAATCTTGCTACATCAGCTGATACTCCACCAAGCACCGTTCCAG</dnaseq>| | sequence = <dnaseq>TTTGTTTGTAACTGAGTTAACTTGTGTTTTCATCAACTATTTTTTAAAGCCAGTAGTAGTAGTTTGAATTTCATACACAGAGAAGCTAAGGCTTAATTAGATTCCTTTATTGTGATATAACTTGTAATAAAACCAAGATATGAACCTAGTCTGAGCATTCAGATATCCAGCTTGTCTTTCTCTTTCTTAGCTATACCAACAAACCCATACAGTTTGCCTCCAAAATGAATGAAATGTTGTCTCTTCCCTCCAGTGTTGTACATAGTCTAGTAAGTAAGAAAACTAAGCCTCCAGAAAAGGCTATTACTTCATCATTACAAACAGTAAATAATTTAATTTTAGAATTTACTTTTACTTTGAATTTTTATTTGATGGTGGAAACAAAGTTCCTATAAAAATGGAGTTGAACTAAGCAGTTTAAACACACTCATATTTGAAACATTTGTTACTTAATCACTAGGTGACTGTCTTGAGAGTAATTACTGATACTAAAACTATTTTTCTTAATCATTAATTTATCAATTCTAGGATGAAGAAGCTGCTCTGGCAGATGGTGAAGATGTTCCCTATGAGAACAGTGTTAGGCAGTTTTTGGGTGAATATAAATCATGGCAAGACAACATTCAAACAGTTCTATTTACATTAGTCCAGGCTATGGGTCAGGTTCGAAGTCAAGAACACGTTGAAATGCTCCAGGAAATCACTCCCACCTTGAAAGAACTGAAAACACAAAGTCAGAGTATCTATAATAATTTAGTGAGTTTTGCATCACCCTTAGTCACCGATGCAACAAATGAATGTTCGAGTCCAACGTCATCTGCTACTTATCAGCCATCCTTCGCTGCAGCAGTCCGGAGTAACACTGGCCAGAAGACTCAGCCTGATGTCATGTCACAGAATGCTAGAAAGCTGATCCAAAAAAATCTTGCTACATCAGCTGATACTCCACCAAGCACCGTTCCAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG018768]][[Category:Transcripts]] |
Latest revision as of 03:00, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT140857 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
964 nt |
| Genomic location |
chr16-:18823333..18827501 |
| Exon number |
3 |
| Exons |
18823333..18823449,18826497..18826603,18826762..18827501 |
| Genome context |
|
| Sequence |
000001 TTTGTTTGTA ACTGAGTTAA CTTGTGTTTT CATCAACTAT TTTTTAAAGC CAGTAGTAGT AGTTTGAATT TCATACACAG 000080
000081 AGAAGCTAAG GCTTAATTAG ATTCCTTTAT TGTGATATAA CTTGTAATAA AACCAAGATA TGAACCTAGT CTGAGCATTC 000160 000161 AGATATCCAG CTTGTCTTTC TCTTTCTTAG CTATACCAAC AAACCCATAC AGTTTGCCTC CAAAATGAAT GAAATGTTGT 000240 000241 CTCTTCCCTC CAGTGTTGTA CATAGTCTAG TAAGTAAGAA AACTAAGCCT CCAGAAAAGG CTATTACTTC ATCATTACAA 000320 000321 ACAGTAAATA ATTTAATTTT AGAATTTACT TTTACTTTGA ATTTTTATTT GATGGTGGAA ACAAAGTTCC TATAAAAATG 000400 000401 GAGTTGAACT AAGCAGTTTA AACACACTCA TATTTGAAAC ATTTGTTACT TAATCACTAG GTGACTGTCT TGAGAGTAAT 000480 000481 TACTGATACT AAAACTATTT TTCTTAATCA TTAATTTATC AATTCTAGGA TGAAGAAGCT GCTCTGGCAG ATGGTGAAGA 000560 000561 TGTTCCCTAT GAGAACAGTG TTAGGCAGTT TTTGGGTGAA TATAAATCAT GGCAAGACAA CATTCAAACA GTTCTATTTA 000640 000641 CATTAGTCCA GGCTATGGGT CAGGTTCGAA GTCAAGAACA CGTTGAAATG CTCCAGGAAA TCACTCCCAC CTTGAAAGAA 000720 000721 CTGAAAACAC AAAGTCAGAG TATCTATAAT AATTTAGTGA GTTTTGCATC ACCCTTAGTC ACCGATGCAA CAAATGAATG 000800 000801 TTCGAGTCCA ACGTCATCTG CTACTTATCA GCCATCCTTC GCTGCAGCAG TCCGGAGTAA CACTGGCCAG AAGACTCAGC 000880 000881 CTGATGTCAT GTCACAGAAT GCTAGAAAGC TGATCCAAAA AAATCTTGCT ACATCAGCTG ATACTCCACC AAGCACCGTT 000960 000961 CCAG |
Predicted Small Protein
| Name | NONHSAT140857_smProtein_224:394 |
| Length | 57 |
| Molecular weight | 6361.4447 |
| Aromaticity | 0.0892857142857 |
| Instability index | 43.3769642857 |
| Isoelectric point | 8.12152099609 |
| Runs | 10 |
| Runs residual | 0.0252732240437 |
| Runs probability | 0.045627980922 |
| Amino acid sequence | MNEMLSLPSSVVHSLVSKKTKPPEKAITSSLQTVNNLILEFTFTLNFYLMVETKFL |
| Secondary structure | LLEELLLLLLEEEEEEELLLLLLHHHHHHHHHHHHHHHHHHHEEELEEEEEEEEEL |
| PRMN | - |
| PiMo | - |
