Difference between revisions of "NONHSAT145815"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>GCATTTGAAAGAGCAGCTAACATCCGTTAACAACATACAGAAGATATCCCTGGAGCCATATTTGGCGGTGATGACACCTGGCCCTGGTAAAAGCACATATTGGACAAGGACTCACAGAAAACACTGGACTTCCCCGGAAGCTACTTGAAAAACATGACCCCTGGCCGGCCTATGTCACCTATACCTCTCAGACAGTGAAAAGACTCATTGAGAAAAGCAAAACTAGAGAACTGGAATGCATGCGTGCCCTCGAGGAAAGACCCTGGGCATCAAGGCAGAATAAACCTTCCAGCGTCATTCAGCCGAAAAGGAGGAAGTCTTCCAAGTCTTCTGGCAAAGCTGTGTTCAGGGACACGCTGTCAGAATCCACGTTATCAATGTGGGGCGCTTATTCGGTATTGGCCATGGCTCCTACCATGATCCCAGAACCCACACACTTACATGCGGATTCCAGAGACTGTCCAACTGAAAACTATAACAAGATCATCTTTGCCCGCAAGCCTATGATGAGGATGCTCCCTACAGTTCGCTACTGACCAACAAGGAGAAACATGCAAATGTTTTAGCCAGGGGTCCC</dnaseq>| | sequence = <dnaseq>GCATTTGAAAGAGCAGCTAACATCCGTTAACAACATACAGAAGATATCCCTGGAGCCATATTTGGCGGTGATGACACCTGGCCCTGGTAAAAGCACATATTGGACAAGGACTCACAGAAAACACTGGACTTCCCCGGAAGCTACTTGAAAAACATGACCCCTGGCCGGCCTATGTCACCTATACCTCTCAGACAGTGAAAAGACTCATTGAGAAAAGCAAAACTAGAGAACTGGAATGCATGCGTGCCCTCGAGGAAAGACCCTGGGCATCAAGGCAGAATAAACCTTCCAGCGTCATTCAGCCGAAAAGGAGGAAGTCTTCCAAGTCTTCTGGCAAAGCTGTGTTCAGGGACACGCTGTCAGAATCCACGTTATCAATGTGGGGCGCTTATTCGGTATTGGCCATGGCTCCTACCATGATCCCAGAACCCACACACTTACATGCGGATTCCAGAGACTGTCCAACTGAAAACTATAACAAGATCATCTTTGCCCGCAAGCCTATGATGAGGATGCTCCCTACAGTTCGCTACTGACCAACAAGGAGAAACATGCAAATGTTTTAGCCAGGGGTCCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG020915]][[Category:Transcripts]] |
Latest revision as of 03:19, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT145815 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
577 nt |
Genomic location |
chr17-:15341049..15355934 |
Exon number |
2 |
Exons |
15341049..15341517,15355827..15355934 |
Genome context |
|
Sequence |
000001 GCATTTGAAA GAGCAGCTAA CATCCGTTAA CAACATACAG AAGATATCCC TGGAGCCATA TTTGGCGGTG ATGACACCTG 000080
000081 GCCCTGGTAA AAGCACATAT TGGACAAGGA CTCACAGAAA ACACTGGACT TCCCCGGAAG CTACTTGAAA AACATGACCC 000160 000161 CTGGCCGGCC TATGTCACCT ATACCTCTCA GACAGTGAAA AGACTCATTG AGAAAAGCAA AACTAGAGAA CTGGAATGCA 000240 000241 TGCGTGCCCT CGAGGAAAGA CCCTGGGCAT CAAGGCAGAA TAAACCTTCC AGCGTCATTC AGCCGAAAAG GAGGAAGTCT 000320 000321 TCCAAGTCTT CTGGCAAAGC TGTGTTCAGG GACACGCTGT CAGAATCCAC GTTATCAATG TGGGGCGCTT ATTCGGTATT 000400 000401 GGCCATGGCT CCTACCATGA TCCCAGAACC CACACACTTA CATGCGGATT CCAGAGACTG TCCAACTGAA AACTATAACA 000480 000481 AGATCATCTT TGCCCGCAAG CCTATGATGA GGATGCTCCC TACAGTTCGC TACTGACCAA CAAGGAGAAA CATGCAAATG 000560 000561 TTTTAGCCAG GGGTCCC |
Predicted Small Protein
Name | NONHSAT145815_smProtein_239:535 |
Length | 99 |
Molecular weight | 11254.9709 |
Aromaticity | 0.0714285714286 |
Instability index | 50.5826530612 |
Isoelectric point | 10.3340454102 |
Runs | 12 |
Runs residual | 0.0165935533092 |
Runs probability | 0.0283445209916 |
Amino acid sequence | MRALEERPWASRQNKPSSVIQPKRRKSSKSSGKAVFRDTLSESTLSMWGAYSVLAMAPTM IPEPTHLHADSRDCPTENYNKIIFARKPMMRMLPTVRY |
Secondary structure | LLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLLHHHHHEELLLHHHHLLLLLL |
PRMN | - |
PiMo | - |