Difference between revisions of "NONHSAT145940"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GGATTGGGATATTCCGACTCCTTAAGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGtttttttgggtttttttttttttttttgagacagtcttgctgtattgcccaggctggagtgtggtggcacaatcacagctcattgcatcctcaatcacccaggcctaagcaatcctcccaccttgtagctgggactacagctcacagcacacctggctaaaattttttttttgttgagacggattctctatgttgcccaggctggtctcaggctcctgggctcagatggtcctcctgcctcagcttccaaagGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAA</dnaseq>| | sequence = <dnaseq>GGATTGGGATATTCCGACTCCTTAAGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGtttttttgggtttttttttttttttttgagacagtcttgctgtattgcccaggctggagtgtggtggcacaatcacagctcattgcatcctcaatcacccaggcctaagcaatcctcccaccttgtagctgggactacagctcacagcacacctggctaaaattttttttttgttgagacggattctctatgttgcccaggctggtctcaggctcctgggctcagatggtcctcctgcctcagcttccaaagGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG020957]][[Category:Transcripts]] |
Latest revision as of 03:20, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT145940 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1021 nt |
| Genomic location |
chr17+:16342301..16345340 |
| Exon number |
5 |
| Exons |
16342301..16342374,16342641..16342728,16343425..16343567,16344388..16344444,16344682..16345340 |
| Genome context |
|
| Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160 000161 GGTCAAGTCT TCACCACTTG CTGGTTCCCA GGAGTAAACT TGTTTGAACG GTGACCTAAT TGCTATATTC ACCTAGGTTG 000240 000241 CAAATTCGTG AAGAATCAGC ATCATGTTTG GCAGCTGAGT ATTGGAGCCA GGAGCCTGCC ATGAGGTTTT GAGAACAGAG 000320 000321 TGCTGTTTTA GAGCTGGCAG CAGCATCTCA GCCCAAGAGA AGGTTATATT CCCAGAGGAT GTCAGTCCCA AGGACCAGTA 000400 000401 GCTGCCATCA GTTTGGATTC TGAAAACTAA CTGGCATCAA CACTGGGTGT AGAAACATGC TTGCCTTATG TATCAGAGGA 000480 000481 CATGCTCAGC AGATCCAAGA GATATATTTG GCAACTTTTT CTAGAAAAGG CACATTGGGT ATCATTCATT ACATTCTTGA 000560 000561 Gtttttttgg gttttttttt ttttttttga gacagtcttg ctgtattgcc caggctggag tgtggtggca caatcacagc 000640 000641 tcattgcatc ctcaatcacc caggcctaag caatcctccc accttgtagc tgggactaca gctcacagca cacctggcta 000720 000721 aaattttttt tttgttgaga cggattctct atgttgccca ggctggtctc aggctcctgg gctcagatgg tcctcctgcc 000800 000801 tcagcttcca aagGCACAGG CCAAGTTGTA GCTTTGTCCC TTGCCATCAT GCCCAACAAG AGGTTCTATA CCTTTTAATG 000880 000881 AATTGACTTT CATAAATTGG TTATGTTGGT GGGCAAAGTT CTTTAAGCTG GAAATTGTAA ATTCCTCCTG AAATGTTTTT 000960 000961 TCATGCAGTT ACCATGAACT AATACTACAA TAAAGGATGG TCTTGGGTGT CAATTCTTGA A |
Predicted Small Protein
| Name | NONHSAT145940_smProtein_68:196 |
| Length | 43 |
| Molecular weight | 4455.963 |
| Aromaticity | 0.047619047619 |
| Instability index | 59.2095238095 |
| Isoelectric point | 6.53900146484 |
| Runs | 7 |
| Runs residual | 0.00949367088608 |
| Runs probability | 0.0271027329852 |
| Amino acid sequence | MEGHICQSLESAKAGTRFPGPQWGCANPRELVKSSPLAGSQE |
| Secondary structure | LLLEELLLHHHLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
