Difference between revisions of "NONHSAT147746"

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sequence = <dnaseq>aatgcagccggacctggcttggttccaggaacaACAAGaataaagACTTGCTGGGTTCCCACCACACATGTTGTCGTGAGCTCACTACACACCCTGTCCCTGGAGCATTGGGATGCAGCCTGGAGCCAGGAAGATGACAGTGTTGTGCACAGCTCTGCACTGGTAATGCACTATGCATGAGTCGCCCTCAGGACCTTGTGTTACTGCTGCTGGTTGGCTGGCCAGGCACTGCTGGATACAGCAAGGGCACTGGCGATAGCAGGCAGCAGCTTCAGTCCACACCTGCCAACTTCAGCCTAGCCAAGGGCACCCACATCAGCACGTCCACAGCCTGAGGTcccctgggttccaccaaggacctctaatgcaagctgatatggggccctgtggccagcagggacccctactagaccatccagactttgcactataaatcttactcaaggcaccatacctgctgataacaggaccttaaagaagttaagatatgcaacactccaaccataaatcttccccaaggcagttgaccctaacatccacatgcacaggaaaccccagaatggccactatatgaccttcctgggccagcagtagtgagcaacaccactatcttgaacccactgagcatggaccaagacttcaaccaggaccaagcatgcacagacaccataacaggaaggaagaaatcactccaggaggcagaggttcctgatgtcaatctctgtaccctacccaataaaaaacgctgagaagctccccttggggagccagctggaggactctt</dnaseq>|
 
sequence = <dnaseq>aatgcagccggacctggcttggttccaggaacaACAAGaataaagACTTGCTGGGTTCCCACCACACATGTTGTCGTGAGCTCACTACACACCCTGTCCCTGGAGCATTGGGATGCAGCCTGGAGCCAGGAAGATGACAGTGTTGTGCACAGCTCTGCACTGGTAATGCACTATGCATGAGTCGCCCTCAGGACCTTGTGTTACTGCTGCTGGTTGGCTGGCCAGGCACTGCTGGATACAGCAAGGGCACTGGCGATAGCAGGCAGCAGCTTCAGTCCACACCTGCCAACTTCAGCCTAGCCAAGGGCACCCACATCAGCACGTCCACAGCCTGAGGTcccctgggttccaccaaggacctctaatgcaagctgatatggggccctgtggccagcagggacccctactagaccatccagactttgcactataaatcttactcaaggcaccatacctgctgataacaggaccttaaagaagttaagatatgcaacactccaaccataaatcttccccaaggcagttgaccctaacatccacatgcacaggaaaccccagaatggccactatatgaccttcctgggccagcagtagtgagcaacaccactatcttgaacccactgagcatggaccaagacttcaaccaggaccaagcatgcacagacaccataacaggaaggaagaaatcactccaggaggcagaggttcctgatgtcaatctctgtaccctacccaataaaaaacgctgagaagctccccttggggagccagctggaggactctt</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG055031]]
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[[Category:Intergenic]][[Category:NONHSAG055031]][[Category:Transcripts]]

Latest revision as of 03:24, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT147746

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

784 nt

Genomic location

chrX-:102691956..102733108

Exon number

2

Exons

102691956..102692694,102733064..102733108

Genome context

Sequence
000001 aatgcagccg gacctggctt ggttccagga acaACAAGaa taaagACTTG CTGGGTTCCC ACCACACATG TTGTCGTGAG 000080
000081 CTCACTACAC ACCCTGTCCC TGGAGCATTG GGATGCAGCC TGGAGCCAGG AAGATGACAG TGTTGTGCAC AGCTCTGCAC 000160
000161 TGGTAATGCA CTATGCATGA GTCGCCCTCA GGACCTTGTG TTACTGCTGC TGGTTGGCTG GCCAGGCACT GCTGGATACA 000240
000241 GCAAGGGCAC TGGCGATAGC AGGCAGCAGC TTCAGTCCAC ACCTGCCAAC TTCAGCCTAG CCAAGGGCAC CCACATCAGC 000320
000321 ACGTCCACAG CCTGAGGTcc cctgggttcc accaaggacc tctaatgcaa gctgatatgg ggccctgtgg ccagcaggga 000400
000401 cccctactag accatccaga ctttgcacta taaatcttac tcaaggcacc atacctgctg ataacaggac cttaaagaag 000480
000481 ttaagatatg caacactcca accataaatc ttccccaagg cagttgaccc taacatccac atgcacagga aaccccagaa 000560
000561 tggccactat atgaccttcc tgggccagca gtagtgagca acaccactat cttgaaccca ctgagcatgg accaagactt 000640
000641 caaccaggac caagcatgca cagacaccat aacaggaagg aagaaatcac tccaggaggc agaggttcct gatgtcaatc 000720
000721 tctgtaccct acccaataaa aaacgctgag aagctcccct tggggagcca gctggaggac tctt
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Predicted Small Protein

Name NONHSAT147746_smProtein_176:334
Length 53
Molecular weight 5446.07
Aromaticity 0.0576923076923
Instability index 61.1826923077
Isoelectric point 9.69403076172
Runs 10
Runs residual 0.041938287701
Runs probability 0.0311694046988
Amino acid sequence MSRPQDLVLLLLVGWPGTAGYSKGTGDSRQQLQSTPANFSLAKGTHISTSTA
Secondary structure LLLHHHHEEEEEELLLLLLLLLLLLLLLHHHHHLLLLLLEELLLLEEELLLL
PRMN -
PiMo -