Difference between revisions of "Lnc-CA5A-4:7"

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sequence = <dnaseq>AGCCATTCCTGAGGGACCTGACCCTTGACCCAAACCCCCGCCCGTAGGCCTCACTCCAACACTGGGGATACATTTCAACATGAGATGTGGAGGGGACACACGTCCAAACCACAGCACCAGGCAATGCTTACACTGCGGGTCTGGGGCCCACTCCGAGAATGACTGCTCCGGACAAAATTACACACACGGACCACGCACCCACCCACAGGATCACACGCCCGTCTTCGGGTTGGGGGTGCAGGGAGGACGGGTAGAGATGTGTTGGGGTGCAAAGGAAAAGTCCTCATGGCCCACATATGTGCTCTGACCCAGTGGCTCTGCAGAAACCCATGAAAGAGGATCCTGAAAGAGCAAGGGCGGCCTCCAGGTGAAGGTGGTGGGCGGCCTCCAGGTGAAGGCGGCCTCCAGGTGAAGGTGGTCAGCACCCTCCCTTTGGCCAAGAGGAGACTGCAGTTTCAACTCAAAGATTATTCCTGAATGATGCAGCAAGCTTAAACTTCCTTAAAAACAAACCTCTGGGAAGAGGAAAACGAGGCAAGATGCTGAGAAAAAGTCATCTCCCACTCTGCCCTTCTCTGGCAAATCGAAGTGTCCTCTTGTGGGAGGCGGTGGGCAGCGACACTCCTGTTGGACGTCAGTGCTCTCGGGATGGGCCCGGCCACCCCGGAGCAGAACTCACTTAGGGCCTGGTGCCCCTGTGCCCAGTTCTCAGAACGTCGGAGTGCTCAGTTCTCAGAACGCCGGAGTGCCCCATTCATAACCTGCAGCCCCGTTCATAGCCTGCAGCTCCCCTCCTTCCTCTCCTCCCGGTCGTCAGGGAGCACCCCCAGCTCCCCTCCCCACTCTCAAACCCTCCTCCTCCCTCCCCTCTCTCATTTCCCTGTTTGCAGGATCTCCTCCTGCCCACTCTCCAGCCCAGGTCCTCCCCTCTCATCTCCAATTCTGCTTCATGGGCCATGACAGCAGGCAGGCCATGGCCTGCTCTCAGCAGTTTGATCGATGGACTAAGGAGATCACTCCTATGAGAGTGAAAAAGTCAAATGTGCCTGAGATTCGGATGGGGAGCTCTCAAAGCTACGGATTGCAAGAGTCAACACCGCCTCAAAAGTACAAGGCCGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGTGGATCACCTGAGGTCAGGAGCTCAAGACCAGCCTGACCAACATGGTGAAATCCCGTCTCTATTAAAAATACAAAAAAGATTAGCCGGGTGTGGTGGTGCATGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGGAGCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGCCTCAAAAAAATAAAAAAATAAAAGTACGAGGCCCGGTTTAAATGCAGGAGGAATCTGGTGAGCGAGTTTCACTCTGATGCAACAGAAAAGCCAAGCCAAGCCTTGGCTGTGCCTGGTCTTGGCCGGGGAGCCACAGGCAGGGTCTGCTGGTTTCGGTGTCAGGGGCACATCCCCAGGACCACGTCTGAGATGGGAAGTGCCTTGATGGAAAACTGATACCTTTTTCTTTCCGAGTAACTTTAGAACATGTCGCTTCAAATATAACTAATATCCTGATTTCAGTGGACTTGCATGGAAGGAAACGCAAGTTCATTTGCCAGTGGGGGGTGAGGACTGGGAGAGTGGGGAGCAGGGTGGGGAAGAGGGGAGCATTCCACAAGCCGCAAGAGCCTGGACACCTCCAGCCTTCAATAAATAGCATTTGAA</dnaseq>|
 
sequence = <dnaseq>AGCCATTCCTGAGGGACCTGACCCTTGACCCAAACCCCCGCCCGTAGGCCTCACTCCAACACTGGGGATACATTTCAACATGAGATGTGGAGGGGACACACGTCCAAACCACAGCACCAGGCAATGCTTACACTGCGGGTCTGGGGCCCACTCCGAGAATGACTGCTCCGGACAAAATTACACACACGGACCACGCACCCACCCACAGGATCACACGCCCGTCTTCGGGTTGGGGGTGCAGGGAGGACGGGTAGAGATGTGTTGGGGTGCAAAGGAAAAGTCCTCATGGCCCACATATGTGCTCTGACCCAGTGGCTCTGCAGAAACCCATGAAAGAGGATCCTGAAAGAGCAAGGGCGGCCTCCAGGTGAAGGTGGTGGGCGGCCTCCAGGTGAAGGCGGCCTCCAGGTGAAGGTGGTCAGCACCCTCCCTTTGGCCAAGAGGAGACTGCAGTTTCAACTCAAAGATTATTCCTGAATGATGCAGCAAGCTTAAACTTCCTTAAAAACAAACCTCTGGGAAGAGGAAAACGAGGCAAGATGCTGAGAAAAAGTCATCTCCCACTCTGCCCTTCTCTGGCAAATCGAAGTGTCCTCTTGTGGGAGGCGGTGGGCAGCGACACTCCTGTTGGACGTCAGTGCTCTCGGGATGGGCCCGGCCACCCCGGAGCAGAACTCACTTAGGGCCTGGTGCCCCTGTGCCCAGTTCTCAGAACGTCGGAGTGCTCAGTTCTCAGAACGCCGGAGTGCCCCATTCATAACCTGCAGCCCCGTTCATAGCCTGCAGCTCCCCTCCTTCCTCTCCTCCCGGTCGTCAGGGAGCACCCCCAGCTCCCCTCCCCACTCTCAAACCCTCCTCCTCCCTCCCCTCTCTCATTTCCCTGTTTGCAGGATCTCCTCCTGCCCACTCTCCAGCCCAGGTCCTCCCCTCTCATCTCCAATTCTGCTTCATGGGCCATGACAGCAGGCAGGCCATGGCCTGCTCTCAGCAGTTTGATCGATGGACTAAGGAGATCACTCCTATGAGAGTGAAAAAGTCAAATGTGCCTGAGATTCGGATGGGGAGCTCTCAAAGCTACGGATTGCAAGAGTCAACACCGCCTCAAAAGTACAAGGCCGGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGACTGAGGCGGGTGGATCACCTGAGGTCAGGAGCTCAAGACCAGCCTGACCAACATGGTGAAATCCCGTCTCTATTAAAAATACAAAAAAGATTAGCCGGGTGTGGTGGTGCATGCTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGGGGAGCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGCCTCAAAAAAATAAAAAAATAAAAGTACGAGGCCCGGTTTAAATGCAGGAGGAATCTGGTGAGCGAGTTTCACTCTGATGCAACAGAAAAGCCAAGCCAAGCCTTGGCTGTGCCTGGTCTTGGCCGGGGAGCCACAGGCAGGGTCTGCTGGTTTCGGTGTCAGGGGCACATCCCCAGGACCACGTCTGAGATGGGAAGTGCCTTGATGGAAAACTGATACCTTTTTCTTTCCGAGTAACTTTAGAACATGTCGCTTCAAATATAACTAATATCCTGATTTCAGTGGACTTGCATGGAAGGAAACGCAAGTTCATTTGCCAGTGGGGGGTGAGGACTGGGAGAGTGGGGAGCAGGGTGGGGAAGAGGGGAGCATTCCACAAGCCGCAAGAGCCTGGACACCTCCAGCCTTCAATAAATAGCATTTGAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:lnc-CA5A-4]][[Category:NONHSAG020276]][[Category:Transcripts]]

Latest revision as of 03:50, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-CA5A-4:7

Source

LNCipedia2.1

Same with

NONHSAT144361

Classification

intergenic

Length

1825 nt

Genomic location

chr16-:88210909..88212870

Exon number

2

Exons

88210909..88212252,88212390..88212870

Genome context

Sequence
000001 AGCCATTCCT GAGGGACCTG ACCCTTGACC CAAACCCCCG CCCGTAGGCC TCACTCCAAC ACTGGGGATA CATTTCAACA 000080
000081 TGAGATGTGG AGGGGACACA CGTCCAAACC ACAGCACCAG GCAATGCTTA CACTGCGGGT CTGGGGCCCA CTCCGAGAAT 000160
000161 GACTGCTCCG GACAAAATTA CACACACGGA CCACGCACCC ACCCACAGGA TCACACGCCC GTCTTCGGGT TGGGGGTGCA 000240
000241 GGGAGGACGG GTAGAGATGT GTTGGGGTGC AAAGGAAAAG TCCTCATGGC CCACATATGT GCTCTGACCC AGTGGCTCTG 000320
000321 CAGAAACCCA TGAAAGAGGA TCCTGAAAGA GCAAGGGCGG CCTCCAGGTG AAGGTGGTGG GCGGCCTCCA GGTGAAGGCG 000400
000401 GCCTCCAGGT GAAGGTGGTC AGCACCCTCC CTTTGGCCAA GAGGAGACTG CAGTTTCAAC TCAAAGATTA TTCCTGAATG 000480
000481 ATGCAGCAAG CTTAAACTTC CTTAAAAACA AACCTCTGGG AAGAGGAAAA CGAGGCAAGA TGCTGAGAAA AAGTCATCTC 000560
000561 CCACTCTGCC CTTCTCTGGC AAATCGAAGT GTCCTCTTGT GGGAGGCGGT GGGCAGCGAC ACTCCTGTTG GACGTCAGTG 000640
000641 CTCTCGGGAT GGGCCCGGCC ACCCCGGAGC AGAACTCACT TAGGGCCTGG TGCCCCTGTG CCCAGTTCTC AGAACGTCGG 000720
000721 AGTGCTCAGT TCTCAGAACG CCGGAGTGCC CCATTCATAA CCTGCAGCCC CGTTCATAGC CTGCAGCTCC CCTCCTTCCT 000800
000801 CTCCTCCCGG TCGTCAGGGA GCACCCCCAG CTCCCCTCCC CACTCTCAAA CCCTCCTCCT CCCTCCCCTC TCTCATTTCC 000880
000881 CTGTTTGCAG GATCTCCTCC TGCCCACTCT CCAGCCCAGG TCCTCCCCTC TCATCTCCAA TTCTGCTTCA TGGGCCATGA 000960
000961 CAGCAGGCAG GCCATGGCCT GCTCTCAGCA GTTTGATCGA TGGACTAAGG AGATCACTCC TATGAGAGTG AAAAAGTCAA 001040
001041 ATGTGCCTGA GATTCGGATG GGGAGCTCTC AAAGCTACGG ATTGCAAGAG TCAACACCGC CTCAAAAGTA CAAGGCCGGC 001120
001121 CGGGTGCAGT GGCTCACACC TGTAATCCCA GCACTTTGGG AGACTGAGGC GGGTGGATCA CCTGAGGTCA GGAGCTCAAG 001200
001201 ACCAGCCTGA CCAACATGGT GAAATCCCGT CTCTATTAAA AATACAAAAA AGATTAGCCG GGTGTGGTGG TGCATGCTTG 001280
001281 TAGTCCCAGC TACTCGGGAG GCTGAGGCAG GGGGAGCACT TGAACCCGGG AGGTGGAGGT TGCAGTGAGC CGAGATTGCA 001360
001361 CCATTGCACT CCAGCCTGGG CAACAGAGTG AGACCCTGCC TCAAAAAAAT AAAAAAATAA AAGTACGAGG CCCGGTTTAA 001440
001441 ATGCAGGAGG AATCTGGTGA GCGAGTTTCA CTCTGATGCA ACAGAAAAGC CAAGCCAAGC CTTGGCTGTG CCTGGTCTTG 001520
001521 GCCGGGGAGC CACAGGCAGG GTCTGCTGGT TTCGGTGTCA GGGGCACATC CCCAGGACCA CGTCTGAGAT GGGAAGTGCC 001600
001601 TTGATGGAAA ACTGATACCT TTTTCTTTCC GAGTAACTTT AGAACATGTC GCTTCAAATA TAACTAATAT CCTGATTTCA 001680
001681 GTGGACTTGC ATGGAAGGAA ACGCAAGTTC ATTTGCCAGT GGGGGGTGAG GACTGGGAGA GTGGGGAGCA GGGTGGGGAA 001760
001761 GAGGGGAGCA TTCCACAAGC CGCAAGAGCC TGGACACCTC CAGCCTTCAA TAAATAGCAT TTGAA
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