Difference between revisions of "Lnc-MTHFSD-2:7"
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sequence = <dnaseq>CGGGTATCAGGATCATACTCAAACCCCAACCCCTGCCCGCCCCAGCCAGGAGGGGAGACGGTTGGGAGTGGGAGGCCTCGGCGCTGTTCTCTGGATGCAACTGAGATTGCCGCTAGAGGGTGACGCCTGGGTCGGAATCCAAGGATTTGTGAAGAGGTGACCCAAATTTCAAGACAATGTTGGATGCAAACGGATTTGCCAGCAACTGCATCACTGTCAAAACCAGCTCTGCCCGTGTCTTCCGAAGATACCAAGTGAAATACATGTAGATGGGATTTACATCTGAAAAACCAAGTGAGAAACTGAAGACCAGAGAGGGTGAGTGGTTTACTCAGTTTGGCACAACTGACCCCAACCTAGCCCTCCATGAGGACTGAGCGCATGAGAGATCCTGAGCCACAGCCGCCCAGCCCTGCTCCTCTCGAATTTCTGACCTACAGGAACTGCAAGAAGTAATGAAAGACTGCTGTTTAAAGCCACTGCATTTTGGCATGATTTGTTATGCAGTCGTAGATAACCAGAAAACATCGGATTTACATTTTAAGGAAACAGAGAAGCAAAGAAGTTAGCAAGCTTGTTTTGGCAGAAGAAAAAACACAAAATACCCAACCACAGATCCTCAAAAATATTGCTAAGCACTAATTTTGCTAACATGTTAGACAGCCTTCGGATCTAGGCAATCTTGTTCCTCAGCTGGAAAGAGTTCCTGCCAGCCATGTGATTCCAAATCCACCCTGGACATATGGGGATAATGAGAAAATCAGCTCCGGCCTTCCCTGGCCTTCCAGCCAAGTGAATGGGGGCATCCCCTGGTGCTTCAGCCCGGGGCCCACCCAGAGGATGCTAGCTGGCCTGCAGAGGCCTCAACCATGCCCTCCTGGACTCAGGTAAGACTGAGGTTTCCATGCCCTCAAAACAATTGTTCAGACAAAAACTCACTGCCCAGGTCAAAGTCACAGCACCAGAAAGCCAACCTGAGGATGAAGACAAAGCTCTTTGTTGGCACAGTCCCCTGATCATTCGAGGTCAGCATCTCCATCAAAATGGACCCAATGCTGAGGCAAGAAGGAGAACATCACTGTTAAGAAGGTAATGAGTCACAAATGCTATTTCGATGGTTTTCTTTGAAAGAAATACACAGAACCAAACCAATTTTAATTAAAGATCTTGTCTTTGTAATCAGGCAGCCACAAATGAAGGCAAAACTGCTTTCATGTGGCATAATATACACAGAGCTGAACTAGTTTTCCCATAAAAGGGCAGGTTCTTTTCTTCAAATAAGAAAAGAGTTTGTTCCTAACAATATGGGGGATGCAACAGAAAGCTGTCTTTTGCAAAGTATAAAATTGCAGATCCTCCCGTGGAAGCCATTTCTTGATGCTAAACCAATGCGAACGTTTGCCAAACGCACATGCGAGCCGGGATTATCCTACCCTTTGAGATTAGACATGTGATCCTGATTTTTAAGTGAAAAACGCAGCCAGAGGCCAAATAAACATACCTACAAGTACATCGAAAGCTCAAATGGTTGAGAAATGATTGTAACACACCCCGGTGTGTATTTCTGAGGAAGAATCAACATGCACATGGAAATTGATGTTTTGATTTTTAATTTTAAAACGACGACAGAACTGAAATACCTCCCCTAACTAGGTCCACTGAAACCAGTGAGGAGATAATCATTTTCAGTTAAATATGCATGTAATTTAATAATCCACAGATGGAAAATGCATTTGAGGTGGACTGAACACAGCCAGGAGTTTTTGCTTATCGACAGCACTGAATCCTGCCTTGACTAGAGAGACTCGTCATGTGATCAACTGTGGCCAGAGGGCATCCTGCAGACAGCTCCTGTCACACCACACTGACCAGACTCTTATGAGTATTTAAGCATCTTCAGGGAAGCGATTGACTGTCTTATAATGGTCTTACAAGTACGGAACTTTATTACCTGCTAATAATCAGAGCACATGATGGCACAATAGAATATACGAGTGAAGTTCTAAATGCAAGGTTGTTCTTATTCTGTGAGTGGCAAAACTCATGCAGTGAGCAGATAAAGCTGGCAGGAGGCATTGGCGCCCTAATGCTGGGCACTAACCACCTGCCCGGACTGCGAATATCTGTTGGGTCCTTTCTATATCTGGTCTATTCTCGTGTTTGATTATATCCTGGTGGCAAGAATAGCAAAATCAACTCTCCTTCCTATCCCATGTGGAGAGGCATGATTTGAGTCAGAGAGCATTATCCTCTCTGCGTTATCCAACCCCATGTCCCATGATGCACTTTGTAGACAAGCAAGTGTCCCTGGTGGAGAATCCACAGCCACACATCCTCATTGGTTGCAAGGATCAGTGTCCAATATCTACTGCCATGATCATTCTCAGTTTTACATCCACAGAGCTTCATAGAATTCTAACACCACAGGTCCAAGTAGAGGTTTTGGCCTCAGAGTGGGCTAGATTCCACCTCTGACAGCAGCTGTGGGACTGTTTTTCCATCTGTAAAATGGAGACAAGAGTATCACCTACCTCATGGTGTTGGTGGGATCGTTAAACAGAATTCCGATCATGAAACCCTTAGCCTGCTCCCTGCATAGGCTGCATGCGCTCAGTGAGCTATGGCTCTGTTTCATGCTGACTTTACCATCATGTAAGCAGTTTTAAAAATGCTAGAAGCTTTAGTCATAGAATTACCATATGATACAGCCTACTGCAGAGTCCAGAGGCTGAGGCAGGAGAGTTACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTGTCTCAACACAAAAAAGAAGACATGTGTCCCCATCACAGTATCATACAGAGTGCTTCCACTGCCCTAAAATACCCTGTGCTCTTCCTATTCATCCCTCTCTTCAACCCCAGCAACCACTGATCCTTTTACCATCTCCATGGTTTTGCCTTTCCCAGAATGTCATATTGTTGGAATCATACGCTATGTAGCCTTTGCAAATGGGCTTCTTTCACCGAGCAATGTGCATTGAAGGTGCCTCTATGACTTTTCAAGGGTTGATAGCTCATTCCTTTTTATTGCTAAATAATATTCCATTGTCTGAATGTACCACATTTTGTTTATCCATTCACCTACTAAAGGACATCTTGGTTGCTTCCAAGTTTGGGCAATTATAAATAAAACTGCTATAAACATTGTGTGCAGGTTTTTTTTTCTAGATGTCAGTTTTTAACTCATTTGGACTATAGAGCACTATTGCTGGATCATATGATACGTG</dnaseq>| | sequence = <dnaseq>CGGGTATCAGGATCATACTCAAACCCCAACCCCTGCCCGCCCCAGCCAGGAGGGGAGACGGTTGGGAGTGGGAGGCCTCGGCGCTGTTCTCTGGATGCAACTGAGATTGCCGCTAGAGGGTGACGCCTGGGTCGGAATCCAAGGATTTGTGAAGAGGTGACCCAAATTTCAAGACAATGTTGGATGCAAACGGATTTGCCAGCAACTGCATCACTGTCAAAACCAGCTCTGCCCGTGTCTTCCGAAGATACCAAGTGAAATACATGTAGATGGGATTTACATCTGAAAAACCAAGTGAGAAACTGAAGACCAGAGAGGGTGAGTGGTTTACTCAGTTTGGCACAACTGACCCCAACCTAGCCCTCCATGAGGACTGAGCGCATGAGAGATCCTGAGCCACAGCCGCCCAGCCCTGCTCCTCTCGAATTTCTGACCTACAGGAACTGCAAGAAGTAATGAAAGACTGCTGTTTAAAGCCACTGCATTTTGGCATGATTTGTTATGCAGTCGTAGATAACCAGAAAACATCGGATTTACATTTTAAGGAAACAGAGAAGCAAAGAAGTTAGCAAGCTTGTTTTGGCAGAAGAAAAAACACAAAATACCCAACCACAGATCCTCAAAAATATTGCTAAGCACTAATTTTGCTAACATGTTAGACAGCCTTCGGATCTAGGCAATCTTGTTCCTCAGCTGGAAAGAGTTCCTGCCAGCCATGTGATTCCAAATCCACCCTGGACATATGGGGATAATGAGAAAATCAGCTCCGGCCTTCCCTGGCCTTCCAGCCAAGTGAATGGGGGCATCCCCTGGTGCTTCAGCCCGGGGCCCACCCAGAGGATGCTAGCTGGCCTGCAGAGGCCTCAACCATGCCCTCCTGGACTCAGGTAAGACTGAGGTTTCCATGCCCTCAAAACAATTGTTCAGACAAAAACTCACTGCCCAGGTCAAAGTCACAGCACCAGAAAGCCAACCTGAGGATGAAGACAAAGCTCTTTGTTGGCACAGTCCCCTGATCATTCGAGGTCAGCATCTCCATCAAAATGGACCCAATGCTGAGGCAAGAAGGAGAACATCACTGTTAAGAAGGTAATGAGTCACAAATGCTATTTCGATGGTTTTCTTTGAAAGAAATACACAGAACCAAACCAATTTTAATTAAAGATCTTGTCTTTGTAATCAGGCAGCCACAAATGAAGGCAAAACTGCTTTCATGTGGCATAATATACACAGAGCTGAACTAGTTTTCCCATAAAAGGGCAGGTTCTTTTCTTCAAATAAGAAAAGAGTTTGTTCCTAACAATATGGGGGATGCAACAGAAAGCTGTCTTTTGCAAAGTATAAAATTGCAGATCCTCCCGTGGAAGCCATTTCTTGATGCTAAACCAATGCGAACGTTTGCCAAACGCACATGCGAGCCGGGATTATCCTACCCTTTGAGATTAGACATGTGATCCTGATTTTTAAGTGAAAAACGCAGCCAGAGGCCAAATAAACATACCTACAAGTACATCGAAAGCTCAAATGGTTGAGAAATGATTGTAACACACCCCGGTGTGTATTTCTGAGGAAGAATCAACATGCACATGGAAATTGATGTTTTGATTTTTAATTTTAAAACGACGACAGAACTGAAATACCTCCCCTAACTAGGTCCACTGAAACCAGTGAGGAGATAATCATTTTCAGTTAAATATGCATGTAATTTAATAATCCACAGATGGAAAATGCATTTGAGGTGGACTGAACACAGCCAGGAGTTTTTGCTTATCGACAGCACTGAATCCTGCCTTGACTAGAGAGACTCGTCATGTGATCAACTGTGGCCAGAGGGCATCCTGCAGACAGCTCCTGTCACACCACACTGACCAGACTCTTATGAGTATTTAAGCATCTTCAGGGAAGCGATTGACTGTCTTATAATGGTCTTACAAGTACGGAACTTTATTACCTGCTAATAATCAGAGCACATGATGGCACAATAGAATATACGAGTGAAGTTCTAAATGCAAGGTTGTTCTTATTCTGTGAGTGGCAAAACTCATGCAGTGAGCAGATAAAGCTGGCAGGAGGCATTGGCGCCCTAATGCTGGGCACTAACCACCTGCCCGGACTGCGAATATCTGTTGGGTCCTTTCTATATCTGGTCTATTCTCGTGTTTGATTATATCCTGGTGGCAAGAATAGCAAAATCAACTCTCCTTCCTATCCCATGTGGAGAGGCATGATTTGAGTCAGAGAGCATTATCCTCTCTGCGTTATCCAACCCCATGTCCCATGATGCACTTTGTAGACAAGCAAGTGTCCCTGGTGGAGAATCCACAGCCACACATCCTCATTGGTTGCAAGGATCAGTGTCCAATATCTACTGCCATGATCATTCTCAGTTTTACATCCACAGAGCTTCATAGAATTCTAACACCACAGGTCCAAGTAGAGGTTTTGGCCTCAGAGTGGGCTAGATTCCACCTCTGACAGCAGCTGTGGGACTGTTTTTCCATCTGTAAAATGGAGACAAGAGTATCACCTACCTCATGGTGTTGGTGGGATCGTTAAACAGAATTCCGATCATGAAACCCTTAGCCTGCTCCCTGCATAGGCTGCATGCGCTCAGTGAGCTATGGCTCTGTTTCATGCTGACTTTACCATCATGTAAGCAGTTTTAAAAATGCTAGAAGCTTTAGTCATAGAATTACCATATGATACAGCCTACTGCAGAGTCCAGAGGCTGAGGCAGGAGAGTTACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTGTCTCAACACAAAAAAGAAGACATGTGTCCCCATCACAGTATCATACAGAGTGCTTCCACTGCCCTAAAATACCCTGTGCTCTTCCTATTCATCCCTCTCTTCAACCCCAGCAACCACTGATCCTTTTACCATCTCCATGGTTTTGCCTTTCCCAGAATGTCATATTGTTGGAATCATACGCTATGTAGCCTTTGCAAATGGGCTTCTTTCACCGAGCAATGTGCATTGAAGGTGCCTCTATGACTTTTCAAGGGTTGATAGCTCATTCCTTTTTATTGCTAAATAATATTCCATTGTCTGAATGTACCACATTTTGTTTATCCATTCACCTACTAAAGGACATCTTGGTTGCTTCCAAGTTTGGGCAATTATAAATAAAACTGCTATAAACATTGTGTGCAGGTTTTTTTTTCTAGATGTCAGTTTTTAACTCATTTGGACTATAGAGCACTATTGCTGGATCATATGATACGTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-MTHFSD-2]] | + | [[Category:Intergenic]][[Category:lnc-MTHFSD-2]][[Category:NONHSAG020218]][[Category:Transcripts]] |
Latest revision as of 04:43, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
lnc-MTHFSD-2:7 |
Source |
LNCipedia2.1 |
Same with |
NONHSAT144203 |
Classification |
intergenic |
Length |
3300 nt |
Genomic location |
chr16-:86508051..86532172 |
Exon number |
4 |
Exons |
86508051..86510805,86523870..86524119,86524459..86524610,86532030..86532172 |
Genome context |
|
Sequence |
000001 CGGGTATCAG GATCATACTC AAACCCCAAC CCCTGCCCGC CCCAGCCAGG AGGGGAGACG GTTGGGAGTG GGAGGCCTCG 000080 000081 GCGCTGTTCT CTGGATGCAA CTGAGATTGC CGCTAGAGGG TGACGCCTGG GTCGGAATCC AAGGATTTGT GAAGAGGTGA 000160 000161 CCCAAATTTC AAGACAATGT TGGATGCAAA CGGATTTGCC AGCAACTGCA TCACTGTCAA AACCAGCTCT GCCCGTGTCT 000240 000241 TCCGAAGATA CCAAGTGAAA TACATGTAGA TGGGATTTAC ATCTGAAAAA CCAAGTGAGA AACTGAAGAC CAGAGAGGGT 000320 000321 GAGTGGTTTA CTCAGTTTGG CACAACTGAC CCCAACCTAG CCCTCCATGA GGACTGAGCG CATGAGAGAT CCTGAGCCAC 000400 000401 AGCCGCCCAG CCCTGCTCCT CTCGAATTTC TGACCTACAG GAACTGCAAG AAGTAATGAA AGACTGCTGT TTAAAGCCAC 000480 000481 TGCATTTTGG CATGATTTGT TATGCAGTCG TAGATAACCA GAAAACATCG GATTTACATT TTAAGGAAAC AGAGAAGCAA 000560 000561 AGAAGTTAGC AAGCTTGTTT TGGCAGAAGA AAAAACACAA AATACCCAAC CACAGATCCT CAAAAATATT GCTAAGCACT 000640 000641 AATTTTGCTA ACATGTTAGA CAGCCTTCGG ATCTAGGCAA TCTTGTTCCT CAGCTGGAAA GAGTTCCTGC CAGCCATGTG 000720 000721 ATTCCAAATC CACCCTGGAC ATATGGGGAT AATGAGAAAA TCAGCTCCGG CCTTCCCTGG CCTTCCAGCC AAGTGAATGG 000800 000801 GGGCATCCCC TGGTGCTTCA GCCCGGGGCC CACCCAGAGG ATGCTAGCTG GCCTGCAGAG GCCTCAACCA TGCCCTCCTG 000880 000881 GACTCAGGTA AGACTGAGGT TTCCATGCCC TCAAAACAAT TGTTCAGACA AAAACTCACT GCCCAGGTCA AAGTCACAGC 000960 000961 ACCAGAAAGC CAACCTGAGG ATGAAGACAA AGCTCTTTGT TGGCACAGTC CCCTGATCAT TCGAGGTCAG CATCTCCATC 001040 001041 AAAATGGACC CAATGCTGAG GCAAGAAGGA GAACATCACT GTTAAGAAGG TAATGAGTCA CAAATGCTAT TTCGATGGTT 001120 001121 TTCTTTGAAA GAAATACACA GAACCAAACC AATTTTAATT AAAGATCTTG TCTTTGTAAT CAGGCAGCCA CAAATGAAGG 001200 001201 CAAAACTGCT TTCATGTGGC ATAATATACA CAGAGCTGAA CTAGTTTTCC CATAAAAGGG CAGGTTCTTT TCTTCAAATA 001280 001281 AGAAAAGAGT TTGTTCCTAA CAATATGGGG GATGCAACAG AAAGCTGTCT TTTGCAAAGT ATAAAATTGC AGATCCTCCC 001360 001361 GTGGAAGCCA TTTCTTGATG CTAAACCAAT GCGAACGTTT GCCAAACGCA CATGCGAGCC GGGATTATCC TACCCTTTGA 001440 001441 GATTAGACAT GTGATCCTGA TTTTTAAGTG AAAAACGCAG CCAGAGGCCA AATAAACATA CCTACAAGTA CATCGAAAGC 001520 001521 TCAAATGGTT GAGAAATGAT TGTAACACAC CCCGGTGTGT ATTTCTGAGG AAGAATCAAC ATGCACATGG AAATTGATGT 001600 001601 TTTGATTTTT AATTTTAAAA CGACGACAGA ACTGAAATAC CTCCCCTAAC TAGGTCCACT GAAACCAGTG AGGAGATAAT 001680 001681 CATTTTCAGT TAAATATGCA TGTAATTTAA TAATCCACAG ATGGAAAATG CATTTGAGGT GGACTGAACA CAGCCAGGAG 001760 001761 TTTTTGCTTA TCGACAGCAC TGAATCCTGC CTTGACTAGA GAGACTCGTC ATGTGATCAA CTGTGGCCAG AGGGCATCCT 001840 001841 GCAGACAGCT CCTGTCACAC CACACTGACC AGACTCTTAT GAGTATTTAA GCATCTTCAG GGAAGCGATT GACTGTCTTA 001920 001921 TAATGGTCTT ACAAG |