Difference between revisions of "Lnc-MTHFSD-2:7"
Line 42: | Line 42: | ||
sequence = <dnaseq>CGGGTATCAGGATCATACTCAAACCCCAACCCCTGCCCGCCCCAGCCAGGAGGGGAGACGGTTGGGAGTGGGAGGCCTCGGCGCTGTTCTCTGGATGCAACTGAGATTGCCGCTAGAGGGTGACGCCTGGGTCGGAATCCAAGGATTTGTGAAGAGGTGACCCAAATTTCAAGACAATGTTGGATGCAAACGGATTTGCCAGCAACTGCATCACTGTCAAAACCAGCTCTGCCCGTGTCTTCCGAAGATACCAAGTGAAATACATGTAGATGGGATTTACATCTGAAAAACCAAGTGAGAAACTGAAGACCAGAGAGGGTGAGTGGTTTACTCAGTTTGGCACAACTGACCCCAACCTAGCCCTCCATGAGGACTGAGCGCATGAGAGATCCTGAGCCACAGCCGCCCAGCCCTGCTCCTCTCGAATTTCTGACCTACAGGAACTGCAAGAAGTAATGAAAGACTGCTGTTTAAAGCCACTGCATTTTGGCATGATTTGTTATGCAGTCGTAGATAACCAGAAAACATCGGATTTACATTTTAAGGAAACAGAGAAGCAAAGAAGTTAGCAAGCTTGTTTTGGCAGAAGAAAAAACACAAAATACCCAACCACAGATCCTCAAAAATATTGCTAAGCACTAATTTTGCTAACATGTTAGACAGCCTTCGGATCTAGGCAATCTTGTTCCTCAGCTGGAAAGAGTTCCTGCCAGCCATGTGATTCCAAATCCACCCTGGACATATGGGGATAATGAGAAAATCAGCTCCGGCCTTCCCTGGCCTTCCAGCCAAGTGAATGGGGGCATCCCCTGGTGCTTCAGCCCGGGGCCCACCCAGAGGATGCTAGCTGGCCTGCAGAGGCCTCAACCATGCCCTCCTGGACTCAGGTAAGACTGAGGTTTCCATGCCCTCAAAACAATTGTTCAGACAAAAACTCACTGCCCAGGTCAAAGTCACAGCACCAGAAAGCCAACCTGAGGATGAAGACAAAGCTCTTTGTTGGCACAGTCCCCTGATCATTCGAGGTCAGCATCTCCATCAAAATGGACCCAATGCTGAGGCAAGAAGGAGAACATCACTGTTAAGAAGGTAATGAGTCACAAATGCTATTTCGATGGTTTTCTTTGAAAGAAATACACAGAACCAAACCAATTTTAATTAAAGATCTTGTCTTTGTAATCAGGCAGCCACAAATGAAGGCAAAACTGCTTTCATGTGGCATAATATACACAGAGCTGAACTAGTTTTCCCATAAAAGGGCAGGTTCTTTTCTTCAAATAAGAAAAGAGTTTGTTCCTAACAATATGGGGGATGCAACAGAAAGCTGTCTTTTGCAAAGTATAAAATTGCAGATCCTCCCGTGGAAGCCATTTCTTGATGCTAAACCAATGCGAACGTTTGCCAAACGCACATGCGAGCCGGGATTATCCTACCCTTTGAGATTAGACATGTGATCCTGATTTTTAAGTGAAAAACGCAGCCAGAGGCCAAATAAACATACCTACAAGTACATCGAAAGCTCAAATGGTTGAGAAATGATTGTAACACACCCCGGTGTGTATTTCTGAGGAAGAATCAACATGCACATGGAAATTGATGTTTTGATTTTTAATTTTAAAACGACGACAGAACTGAAATACCTCCCCTAACTAGGTCCACTGAAACCAGTGAGGAGATAATCATTTTCAGTTAAATATGCATGTAATTTAATAATCCACAGATGGAAAATGCATTTGAGGTGGACTGAACACAGCCAGGAGTTTTTGCTTATCGACAGCACTGAATCCTGCCTTGACTAGAGAGACTCGTCATGTGATCAACTGTGGCCAGAGGGCATCCTGCAGACAGCTCCTGTCACACCACACTGACCAGACTCTTATGAGTATTTAAGCATCTTCAGGGAAGCGATTGACTGTCTTATAATGGTCTTACAAGTACGGAACTTTATTACCTGCTAATAATCAGAGCACATGATGGCACAATAGAATATACGAGTGAAGTTCTAAATGCAAGGTTGTTCTTATTCTGTGAGTGGCAAAACTCATGCAGTGAGCAGATAAAGCTGGCAGGAGGCATTGGCGCCCTAATGCTGGGCACTAACCACCTGCCCGGACTGCGAATATCTGTTGGGTCCTTTCTATATCTGGTCTATTCTCGTGTTTGATTATATCCTGGTGGCAAGAATAGCAAAATCAACTCTCCTTCCTATCCCATGTGGAGAGGCATGATTTGAGTCAGAGAGCATTATCCTCTCTGCGTTATCCAACCCCATGTCCCATGATGCACTTTGTAGACAAGCAAGTGTCCCTGGTGGAGAATCCACAGCCACACATCCTCATTGGTTGCAAGGATCAGTGTCCAATATCTACTGCCATGATCATTCTCAGTTTTACATCCACAGAGCTTCATAGAATTCTAACACCACAGGTCCAAGTAGAGGTTTTGGCCTCAGAGTGGGCTAGATTCCACCTCTGACAGCAGCTGTGGGACTGTTTTTCCATCTGTAAAATGGAGACAAGAGTATCACCTACCTCATGGTGTTGGTGGGATCGTTAAACAGAATTCCGATCATGAAACCCTTAGCCTGCTCCCTGCATAGGCTGCATGCGCTCAGTGAGCTATGGCTCTGTTTCATGCTGACTTTACCATCATGTAAGCAGTTTTAAAAATGCTAGAAGCTTTAGTCATAGAATTACCATATGATACAGCCTACTGCAGAGTCCAGAGGCTGAGGCAGGAGAGTTACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTGTCTCAACACAAAAAAGAAGACATGTGTCCCCATCACAGTATCATACAGAGTGCTTCCACTGCCCTAAAATACCCTGTGCTCTTCCTATTCATCCCTCTCTTCAACCCCAGCAACCACTGATCCTTTTACCATCTCCATGGTTTTGCCTTTCCCAGAATGTCATATTGTTGGAATCATACGCTATGTAGCCTTTGCAAATGGGCTTCTTTCACCGAGCAATGTGCATTGAAGGTGCCTCTATGACTTTTCAAGGGTTGATAGCTCATTCCTTTTTATTGCTAAATAATATTCCATTGTCTGAATGTACCACATTTTGTTTATCCATTCACCTACTAAAGGACATCTTGGTTGCTTCCAAGTTTGGGCAATTATAAATAAAACTGCTATAAACATTGTGTGCAGGTTTTTTTTTCTAGATGTCAGTTTTTAACTCATTTGGACTATAGAGCACTATTGCTGGATCATATGATACGTG</dnaseq>| | sequence = <dnaseq>CGGGTATCAGGATCATACTCAAACCCCAACCCCTGCCCGCCCCAGCCAGGAGGGGAGACGGTTGGGAGTGGGAGGCCTCGGCGCTGTTCTCTGGATGCAACTGAGATTGCCGCTAGAGGGTGACGCCTGGGTCGGAATCCAAGGATTTGTGAAGAGGTGACCCAAATTTCAAGACAATGTTGGATGCAAACGGATTTGCCAGCAACTGCATCACTGTCAAAACCAGCTCTGCCCGTGTCTTCCGAAGATACCAAGTGAAATACATGTAGATGGGATTTACATCTGAAAAACCAAGTGAGAAACTGAAGACCAGAGAGGGTGAGTGGTTTACTCAGTTTGGCACAACTGACCCCAACCTAGCCCTCCATGAGGACTGAGCGCATGAGAGATCCTGAGCCACAGCCGCCCAGCCCTGCTCCTCTCGAATTTCTGACCTACAGGAACTGCAAGAAGTAATGAAAGACTGCTGTTTAAAGCCACTGCATTTTGGCATGATTTGTTATGCAGTCGTAGATAACCAGAAAACATCGGATTTACATTTTAAGGAAACAGAGAAGCAAAGAAGTTAGCAAGCTTGTTTTGGCAGAAGAAAAAACACAAAATACCCAACCACAGATCCTCAAAAATATTGCTAAGCACTAATTTTGCTAACATGTTAGACAGCCTTCGGATCTAGGCAATCTTGTTCCTCAGCTGGAAAGAGTTCCTGCCAGCCATGTGATTCCAAATCCACCCTGGACATATGGGGATAATGAGAAAATCAGCTCCGGCCTTCCCTGGCCTTCCAGCCAAGTGAATGGGGGCATCCCCTGGTGCTTCAGCCCGGGGCCCACCCAGAGGATGCTAGCTGGCCTGCAGAGGCCTCAACCATGCCCTCCTGGACTCAGGTAAGACTGAGGTTTCCATGCCCTCAAAACAATTGTTCAGACAAAAACTCACTGCCCAGGTCAAAGTCACAGCACCAGAAAGCCAACCTGAGGATGAAGACAAAGCTCTTTGTTGGCACAGTCCCCTGATCATTCGAGGTCAGCATCTCCATCAAAATGGACCCAATGCTGAGGCAAGAAGGAGAACATCACTGTTAAGAAGGTAATGAGTCACAAATGCTATTTCGATGGTTTTCTTTGAAAGAAATACACAGAACCAAACCAATTTTAATTAAAGATCTTGTCTTTGTAATCAGGCAGCCACAAATGAAGGCAAAACTGCTTTCATGTGGCATAATATACACAGAGCTGAACTAGTTTTCCCATAAAAGGGCAGGTTCTTTTCTTCAAATAAGAAAAGAGTTTGTTCCTAACAATATGGGGGATGCAACAGAAAGCTGTCTTTTGCAAAGTATAAAATTGCAGATCCTCCCGTGGAAGCCATTTCTTGATGCTAAACCAATGCGAACGTTTGCCAAACGCACATGCGAGCCGGGATTATCCTACCCTTTGAGATTAGACATGTGATCCTGATTTTTAAGTGAAAAACGCAGCCAGAGGCCAAATAAACATACCTACAAGTACATCGAAAGCTCAAATGGTTGAGAAATGATTGTAACACACCCCGGTGTGTATTTCTGAGGAAGAATCAACATGCACATGGAAATTGATGTTTTGATTTTTAATTTTAAAACGACGACAGAACTGAAATACCTCCCCTAACTAGGTCCACTGAAACCAGTGAGGAGATAATCATTTTCAGTTAAATATGCATGTAATTTAATAATCCACAGATGGAAAATGCATTTGAGGTGGACTGAACACAGCCAGGAGTTTTTGCTTATCGACAGCACTGAATCCTGCCTTGACTAGAGAGACTCGTCATGTGATCAACTGTGGCCAGAGGGCATCCTGCAGACAGCTCCTGTCACACCACACTGACCAGACTCTTATGAGTATTTAAGCATCTTCAGGGAAGCGATTGACTGTCTTATAATGGTCTTACAAGTACGGAACTTTATTACCTGCTAATAATCAGAGCACATGATGGCACAATAGAATATACGAGTGAAGTTCTAAATGCAAGGTTGTTCTTATTCTGTGAGTGGCAAAACTCATGCAGTGAGCAGATAAAGCTGGCAGGAGGCATTGGCGCCCTAATGCTGGGCACTAACCACCTGCCCGGACTGCGAATATCTGTTGGGTCCTTTCTATATCTGGTCTATTCTCGTGTTTGATTATATCCTGGTGGCAAGAATAGCAAAATCAACTCTCCTTCCTATCCCATGTGGAGAGGCATGATTTGAGTCAGAGAGCATTATCCTCTCTGCGTTATCCAACCCCATGTCCCATGATGCACTTTGTAGACAAGCAAGTGTCCCTGGTGGAGAATCCACAGCCACACATCCTCATTGGTTGCAAGGATCAGTGTCCAATATCTACTGCCATGATCATTCTCAGTTTTACATCCACAGAGCTTCATAGAATTCTAACACCACAGGTCCAAGTAGAGGTTTTGGCCTCAGAGTGGGCTAGATTCCACCTCTGACAGCAGCTGTGGGACTGTTTTTCCATCTGTAAAATGGAGACAAGAGTATCACCTACCTCATGGTGTTGGTGGGATCGTTAAACAGAATTCCGATCATGAAACCCTTAGCCTGCTCCCTGCATAGGCTGCATGCGCTCAGTGAGCTATGGCTCTGTTTCATGCTGACTTTACCATCATGTAAGCAGTTTTAAAAATGCTAGAAGCTTTAGTCATAGAATTACCATATGATACAGCCTACTGCAGAGTCCAGAGGCTGAGGCAGGAGAGTTACTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTCTGTCTCAACACAAAAAAGAAGACATGTGTCCCCATCACAGTATCATACAGAGTGCTTCCACTGCCCTAAAATACCCTGTGCTCTTCCTATTCATCCCTCTCTTCAACCCCAGCAACCACTGATCCTTTTACCATCTCCATGGTTTTGCCTTTCCCAGAATGTCATATTGTTGGAATCATACGCTATGTAGCCTTTGCAAATGGGCTTCTTTCACCGAGCAATGTGCATTGAAGGTGCCTCTATGACTTTTCAAGGGTTGATAGCTCATTCCTTTTTATTGCTAAATAATATTCCATTGTCTGAATGTACCACATTTTGTTTATCCATTCACCTACTAAAGGACATCTTGGTTGCTTCCAAGTTTGGGCAATTATAAATAAAACTGCTATAAACATTGTGTGCAGGTTTTTTTTTCTAGATGTCAGTTTTTAACTCATTTGGACTATAGAGCACTATTGCTGGATCATATGATACGTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-MTHFSD-2]][[Category:NONHSAG020218]] | + | [[Category:Intergenic]][[Category:lnc-MTHFSD-2]][[Category:NONHSAG020218]][[Category:Transcripts]] |
Latest revision as of 04:43, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
lnc-MTHFSD-2:7 |
Source |
LNCipedia2.1 |
Same with |
NONHSAT144203 |
Classification |
intergenic |
Length |
3300 nt |
Genomic location |
chr16-:86508051..86532172 |
Exon number |
4 |
Exons |
86508051..86510805,86523870..86524119,86524459..86524610,86532030..86532172 |
Genome context |
|
Sequence |
000001 CGGGTATCAG GATCATACTC AAACCCCAAC CCCTGCCCGC CCCAGCCAGG AGGGGAGACG GTTGGGAGTG GGAGGCCTCG 000080
000081 GCGCTGTTCT CTGGATGCAA CTGAGATTGC CGCTAGAGGG TGACGCCTGG GTCGGAATCC AAGGATTTGT GAAGAGGTGA 000160 000161 CCCAAATTTC AAGACAATGT TGGATGCAAA CGGATTTGCC AGCAACTGCA TCACTGTCAA AACCAGCTCT GCCCGTGTCT 000240 000241 TCCGAAGATA CCAAGTGAAA TACATGTAGA TGGGATTTAC ATCTGAAAAA CCAAGTGAGA AACTGAAGAC CAGAGAGGGT 000320 000321 GAGTGGTTTA CTCAGTTTGG CACAACTGAC CCCAACCTAG CCCTCCATGA GGACTGAGCG CATGAGAGAT CCTGAGCCAC 000400 000401 AGCCGCCCAG CCCTGCTCCT CTCGAATTTC TGACCTACAG GAACTGCAAG AAGTAATGAA AGACTGCTGT TTAAAGCCAC 000480 000481 TGCATTTTGG CATGATTTGT TATGCAGTCG TAGATAACCA GAAAACATCG GATTTACATT TTAAGGAAAC AGAGAAGCAA 000560 000561 AGAAGTTAGC AAGCTTGTTT TGGCAGAAGA AAAAACACAA AATACCCAAC CACAGATCCT CAAAAATATT GCTAAGCACT 000640 000641 AATTTTGCTA ACATGTTAGA CAGCCTTCGG ATCTAGGCAA TCTTGTTCCT CAGCTGGAAA GAGTTCCTGC CAGCCATGTG 000720 000721 ATTCCAAATC CACCCTGGAC ATATGGGGAT AATGAGAAAA TCAGCTCCGG CCTTCCCTGG CCTTCCAGCC AAGTGAATGG 000800 000801 GGGCATCCCC TGGTGCTTCA GCCCGGGGCC CACCCAGAGG ATGCTAGCTG GCCTGCAGAG GCCTCAACCA TGCCCTCCTG 000880 000881 GACTCAGGTA AGACTGAGGT TTCCATGCCC TCAAAACAAT TGTTCAGACA AAAACTCACT GCCCAGGTCA AAGTCACAGC 000960 000961 ACCAGAAAGC CAACCTGAGG ATGAAGACAA AGCTCTTTGT TGGCACAGTC CCCTGATCAT TCGAGGTCAG CATCTCCATC 001040 001041 AAAATGGACC CAATGCTGAG GCAAGAAGGA GAACATCACT GTTAAGAAGG TAATGAGTCA CAAATGCTAT TTCGATGGTT 001120 001121 TTCTTTGAAA GAAATACACA GAACCAAACC AATTTTAATT AAAGATCTTG TCTTTGTAAT CAGGCAGCCA CAAATGAAGG 001200 001201 CAAAACTGCT TTCATGTGGC ATAATATACA CAGAGCTGAA CTAGTTTTCC CATAAAAGGG CAGGTTCTTT TCTTCAAATA 001280 001281 AGAAAAGAGT TTGTTCCTAA CAATATGGGG GATGCAACAG AAAGCTGTCT TTTGCAAAGT ATAAAATTGC AGATCCTCCC 001360 001361 GTGGAAGCCA TTTCTTGATG CTAAACCAAT GCGAACGTTT GCCAAACGCA CATGCGAGCC GGGATTATCC TACCCTTTGA 001440 001441 GATTAGACAT GTGATCCTGA TTTTTAAGTG AAAAACGCAG CCAGAGGCCA AATAAACATA CCTACAAGTA CATCGAAAGC 001520 001521 TCAAATGGTT GAGAAATGAT TGTAACACAC CCCGGTGTGT ATTTCTGAGG AAGAATCAAC ATGCACATGG AAATTGATGT 001600 001601 TTTGATTTTT AATTTTAAAA CGACGACAGA ACTGAAATAC CTCCCCTAAC TAGGTCCACT GAAACCAGTG AGGAGATAAT 001680 001681 CATTTTCAGT TAAATATGCA TGTAATTTAA TAATCCACAG ATGGAAAATG CATTTGAGGT GGACTGAACA CAGCCAGGAG 001760 001761 TTTTTGCTTA TCGACAGCAC TGAATCCTGC CTTGACTAGA GAGACTCGTC ATGTGATCAA CTGTGGCCAG AGGGCATCCT 001840 001841 GCAGACAGCT CCTGTCACAC CACACTGACC AGACTCTTAT GAGTATTTAA GCATCTTCAG GGAAGCGATT GACTGTCTTA 001920 001921 TAATGGTCTT ACAAGTACGG AACTTTATTA CCTGCTAATA ATCAGAGCAC ATGATGGCAC AATAGAATAT ACGAGTGAAG 002000 002001 TTCTAAATGC AAGGTTGTTC TTATTCTGTG AGTGGCAAAA CTCATGCAGT GAGCAGATAA AGCTGGCAGG AGGCATTGGC 002080 002081 GCCCTAATGC TGGGCACTAA CCACCTGCCC GGACTGCGAA TATCTGTTGG GTCCTTTCTA TATCTGGTCT ATTCTCGTGT 002160 002161 TTGATTATAT CCTGGTGGCA AGAATAGCAA AATCAACTCT CCTTCCTATC CCATGTGGAG AGGCATGATT TGAGTCAGAG 002240 002241 AGCATTATCC TCTCTGCGTT ATCCAACCCC ATGTCCCATG ATGCACTTTG TAGACAAGCA AGTGTCCCTG GTGGAGAATC 002320 002321 CACAGCCACA CATCCTCATT GGTTGCAAGG ATCAGTGTCC AATATCTACT GCCATGATCA TTCTCAGTTT TACATCCACA 002400 002401 GAGCTTCATA GAATTCTAAC ACCACAGGTC CAAGTAGAGG TTTTGGCCTC AGAGTGGGCT AGATTCCACC TCTGACAGCA 002480 002481 GCTGTGGGAC TGTTTTTCCA TCTGTAAAAT GGAGACAAGA GTATCACCTA CCTCATGGTG TTGGTGGGAT CGTTAAACAG 002560 002561 AATTCCGATC ATGAAACCCT TAGCCTGCTC CCTGCATAGG CTGCATGCGC TCAGTGAGCT ATGGCTCTGT TTCATGCTGA 002640 002641 CTTTACCATC ATGTAAGCAG TTTTAAAAAT GCTAGAAGCT TTAGTCATAG AATTACCATA TGATACAGCC TACTGCAGAG 002720 002721 TCCAGAGGCT GAGGCAGGAG AGTTACTTGA ACCTGGGAGG CGGAGGTTGC AGTGAGCCAA GATCGCGCCA CTGCACTCCA 002800 002801 GCCTGGGCAA CAGAGTGAGA TTCTGTCTCA ACACAAAAAA GAAGACATGT GTCCCCATCA CAGTATCATA CAGAGTGCTT 002880 002881 CCACTGCCCT AAAATACCCT GTGCTCTTCC TATTCATCCC TCTCTTCAAC CCCAGCAACC ACTGATCCTT TTACCATCTC 002960 002961 CATGGTTTTG CCTTTCCCAG AATGTCATAT TGTTGGAATC ATACGCTATG TAGCCTTTGC AAATGGGCTT CTTTCACCGA 003040 003041 GCAATGTGCA TTGAAGGTGC CTCTATGACT TTTCAAGGGT TGATAGCTCA TTCCTTTTTA TTGCTAAATA ATATTCCATT 003120 003121 GTCTGAATGT ACCACATTTT GTTTATCCAT TCACCTACTA AAGGACATCT TGGTTGCTTC CAAGTTTGGG CAATTATAAA 003200 003201 TAAAACTGCT ATAAACATTG TGTGCAGGTT TTTTTTTCTA GATGTCAGTT TTTAACTCAT TTGGACTATA GAGCACTATT 003280 003281 GCTGGATCAT ATGATACGTG |