Difference between revisions of "NONHSAT118284"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ATACAGGTGACCGTATCCTGAGCCCCGGGCAGAGGCAGGACCGAGCCGCAATCTGAACAGAAATCCAGGTCCGACTGAAAGCTGGAGCAAGTATTGGCGAGGTCCATGACAGACATGCGGTCGGGTCTGAGGAGGGAGTTGGAAGTTTATTAACAAAAGAGAGAAGAGTTCCTGTCCCAGAGGTCGTAACTATTCTGTCCCAGGACCTAGGAGTATATAACCCGAACCCTCCTGCCACGCACGCCTCCTGCCTCTGCGACCAAGGAGCCGAAACGCCCGGAATTCCCAGACAGCGTCGGGTACTAAAGGACTTGGAACCCTTTCCAGGGGCCGGTGAGAGGAGTTAACCAACTCCGTGGGCTAGAGCGCCAGCTCTGCGCCCGCGGCGGGGCAGCGAGATAGAGCCGGCTAGAGCGTCAGGCTTTCGCGTTGACGATTGGCTGTGACGTCATAATTAATTGCGAACCGTGTCTCGGGAGCGTTAGAGATGGAGACTAACGTCTTCCAAGGGAGATTGCGTCTCTACTTTCACCCTGGTACTGAGAGGTTGAGCACAAAATTGGTAACCAATGCTGCGCTTCCAGCAAATTTTCCCACCAGCACCCAATCCTGGGATATTTATTCTCTTTGTCTCACATCCTACAGGAACGCAGTCGCGGGGTATATCCCCCTGAAAACCGTACGTTGCCAAATAATGATTTCTTTGGATTAGAGAACTACAACTCCCCTGGGTCCTGAGCCGGTATTTCCCTTTTGCGGCTGCACCGTAGTTAAAAACAAAGCTAAGTGTTCTGGGACGTATAGTTCTAGCGTTCCTTGGGTCCCGCTGGCGAGCGTGGGCTTTCTGCAGCTCGCAACCGGCCTCATGCTTTGCGGACGGTTCACTGCGCTTGGAAAGGGATTGGCCTGGGGTACATCATCTAAAGATCCTAGGATTGCTGCAGGTCAGCAGTCTCCACTGGAAAAAAAGATCTTGCATGTATTTCAAGTCCTCTGATGAATCATGTGATCTACTAGACCCTGAAGATACAGTGAAGAGCAAAAgaacacggatgaaatgagaaacaaaaacgatggagaaaaccaaaaaaggggacacatgggatccaggcaataggagagccagcataagagagaggcagagggatgcccaggatgaggtgaagacgatcttggaaatcagcccagatgtgcatgcaccagtccacgtgtggcaggaccaagggaagtgtcttcacaaagatgaggctttgatttgttggagaaactgttaccagaaaaacaggtcccgatcccgaccccaaaagagtattcttggatcttgcacaggaaggaattaaagGTCTAGCTCTGTCTCCTCAGCACATGTTCTAGGCTCTGACTGCAAGTGCTGACTTGGGCTCCCAGCCCCACACAGACCCTCtgttccatgaaagggccatctatgcaaagtgccccccaaatgccaaaggagccaataaaccaaggaacaagacag</dnaseq>| | sequence = <dnaseq>ATACAGGTGACCGTATCCTGAGCCCCGGGCAGAGGCAGGACCGAGCCGCAATCTGAACAGAAATCCAGGTCCGACTGAAAGCTGGAGCAAGTATTGGCGAGGTCCATGACAGACATGCGGTCGGGTCTGAGGAGGGAGTTGGAAGTTTATTAACAAAAGAGAGAAGAGTTCCTGTCCCAGAGGTCGTAACTATTCTGTCCCAGGACCTAGGAGTATATAACCCGAACCCTCCTGCCACGCACGCCTCCTGCCTCTGCGACCAAGGAGCCGAAACGCCCGGAATTCCCAGACAGCGTCGGGTACTAAAGGACTTGGAACCCTTTCCAGGGGCCGGTGAGAGGAGTTAACCAACTCCGTGGGCTAGAGCGCCAGCTCTGCGCCCGCGGCGGGGCAGCGAGATAGAGCCGGCTAGAGCGTCAGGCTTTCGCGTTGACGATTGGCTGTGACGTCATAATTAATTGCGAACCGTGTCTCGGGAGCGTTAGAGATGGAGACTAACGTCTTCCAAGGGAGATTGCGTCTCTACTTTCACCCTGGTACTGAGAGGTTGAGCACAAAATTGGTAACCAATGCTGCGCTTCCAGCAAATTTTCCCACCAGCACCCAATCCTGGGATATTTATTCTCTTTGTCTCACATCCTACAGGAACGCAGTCGCGGGGTATATCCCCCTGAAAACCGTACGTTGCCAAATAATGATTTCTTTGGATTAGAGAACTACAACTCCCCTGGGTCCTGAGCCGGTATTTCCCTTTTGCGGCTGCACCGTAGTTAAAAACAAAGCTAAGTGTTCTGGGACGTATAGTTCTAGCGTTCCTTGGGTCCCGCTGGCGAGCGTGGGCTTTCTGCAGCTCGCAACCGGCCTCATGCTTTGCGGACGGTTCACTGCGCTTGGAAAGGGATTGGCCTGGGGTACATCATCTAAAGATCCTAGGATTGCTGCAGGTCAGCAGTCTCCACTGGAAAAAAAGATCTTGCATGTATTTCAAGTCCTCTGATGAATCATGTGATCTACTAGACCCTGAAGATACAGTGAAGAGCAAAAgaacacggatgaaatgagaaacaaaaacgatggagaaaaccaaaaaaggggacacatgggatccaggcaataggagagccagcataagagagaggcagagggatgcccaggatgaggtgaagacgatcttggaaatcagcccagatgtgcatgcaccagtccacgtgtggcaggaccaagggaagtgtcttcacaaagatgaggctttgatttgttggagaaactgttaccagaaaaacaggtcccgatcccgaccccaaaagagtattcttggatcttgcacaggaaggaattaaagGTCTAGCTCTGTCTCCTCAGCACATGTTCTAGGCTCTGACTGCAAGTGCTGACTTGGGCTCCCAGCCCCACACAGACCCTCtgttccatgaaagggccatctatgcaaagtgccccccaaatgccaaaggagccaataaaccaaggaacaagacag</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG046563]][[Category:Transcripts]] |
Latest revision as of 06:23, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT118284 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1498 nt |
| Genomic location |
chr6_ssto_hap7-:1316891..1359860 |
| Exon number |
6 |
| Exons |
1316891..1317046,1318789..1318883,1333102..1333304,1334110..1334177,1356335..1356410,1358961..1359860 |
| Genome context |
|
| Sequence |
000001 ATACAGGTGA CCGTATCCTG AGCCCCGGGC AGAGGCAGGA CCGAGCCGCA ATCTGAACAG AAATCCAGGT CCGACTGAAA 000080
000081 GCTGGAGCAA GTATTGGCGA GGTCCATGAC AGACATGCGG TCGGGTCTGA GGAGGGAGTT GGAAGTTTAT TAACAAAAGA 000160 000161 GAGAAGAGTT CCTGTCCCAG AGGTCGTAAC TATTCTGTCC CAGGACCTAG GAGTATATAA CCCGAACCCT CCTGCCACGC 000240 000241 ACGCCTCCTG CCTCTGCGAC CAAGGAGCCG AAACGCCCGG AATTCCCAGA CAGCGTCGGG TACTAAAGGA CTTGGAACCC 000320 000321 TTTCCAGGGG CCGGTGAGAG GAGTTAACCA ACTCCGTGGG CTAGAGCGCC AGCTCTGCGC CCGCGGCGGG GCAGCGAGAT 000400 000401 AGAGCCGGCT AGAGCGTCAG GCTTTCGCGT TGACGATTGG CTGTGACGTC ATAATTAATT GCGAACCGTG TCTCGGGAGC 000480 000481 GTTAGAGATG GAGACTAACG TCTTCCAAGG GAGATTGCGT CTCTACTTTC ACCCTGGTAC TGAGAGGTTG AGCACAAAAT 000560 000561 TGGTAACCAA TGCTGCGCTT CCAGCAAATT TTCCCACCAG CACCCAATCC TGGGATATTT ATTCTCTTTG TCTCACATCC 000640 000641 TACAGGAACG CAGTCGCGGG GTATATCCCC CTGAAAACCG TACGTTGCCA AATAATGATT TCTTTGGATT AGAGAACTAC 000720 000721 AACTCCCCTG GGTCCTGAGC CGGTATTTCC CTTTTGCGGC TGCACCGTAG TTAAAAACAA AGCTAAGTGT TCTGGGACGT 000800 000801 ATAGTTCTAG CGTTCCTTGG GTCCCGCTGG CGAGCGTGGG CTTTCTGCAG CTCGCAACCG GCCTCATGCT TTGCGGACGG 000880 000881 TTCACTGCGC TTGGAAAGGG ATTGGCCTGG GGTACATCAT CTAAAGATCC TAGGATTGCT GCAGGTCAGC AGTCTCCACT 000960 000961 GGAAAAAAAG ATCTTGCATG TATTTCAAGT CCTCTGATGA ATCATGTGAT CTACTAGACC CTGAAGATAC AGTGAAGAGC 001040 001041 AAAAgaacac ggatgaaatg agaaacaaaa acgatggaga aaaccaaaaa aggggacaca tgggatccag gcaataggag 001120 001121 agccagcata agagagaggc agagggatgc ccaggatgag gtgaagacga tcttggaaat cagcccagat gtgcatgcac 001200 001201 cagtccacgt gtggcaggac caagggaagt gtcttcacaa agatgaggct ttgatttgtt ggagaaactg ttaccagaaa 001280 001281 aacaggtccc gatcccgacc ccaaaagagt attcttggat cttgcacagg aaggaattaa agGTCTAGCT CTGTCTCCTC 001360 001361 AGCACATGTT CTAGGCTCTG ACTGCAAGTG CTGACTTGGG CTCCCAGCCC CACACAGACC CTCtgttcca tgaaagggcc 001440 001441 atctatgcaa agtgcccccc aaatgccaaa ggagccaata aaccaaggaa caagacag |
Predicted Small Protein
| Name | NONHSAT118284_smProtein_1073:1339 |
| Length | 89 |
| Molecular weight | 10258.4572 |
| Aromaticity | 0.0454545454545 |
| Instability index | 66.6363636364 |
| Isoelectric point | 9.45831298828 |
| Runs | 13 |
| Runs residual | 0.0163636363636 |
| Runs probability | 0.0378976261329 |
| Amino acid sequence | MEKTKKGDTWDPGNRRASIRERQRDAQDEVKTILEISPDVHAPVHVWQDQGKCLHKDEAL ICWRNCYQKNRSRSRPQKSILGSCTGRN |
| Secondary structure | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHEEELLLLLLLEEEEELLLEEELLLLEE EEEEHHHLLLLLLLLLLLLEEELLLLLL |
| PRMN | - |
| PiMo | - |
