Difference between revisions of "NONHSAT118895"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCCAGATTATCCAAAGAGAGAAGACAGAATCATTATAAATCCCAGTAGCAGTCTGCTGGCCAGCCAAGATGAGACAAAGTTGCCTAAAATAAGACTTTTTTGACTATTCTAAATTGACTCCTCTTGACCAGCACTGCTTCATCCAAGCTGCTGACCTCCTCATGGCCGACTTCAAAGTGCTCAGTAGTCAGGACATCATGTGGGCCCTGCACGAGCTCAAAGGACACTATGCAATCACCCGAAAGAAGGAACCTTTCCCTTTCTCAATTTTTAGGCCTTTTCTGATGCCATTAAAAAATGGCAGGAGCTATCACCAGAAACCAGTGGAAAAAGGAAAAAGAGAAAAGAAATGAACCAGTATTCTTAAATTGATTTCAAGTTTGAACAAGGGGTTGGCATCTGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGATTACCACCAGGCCTTGCACACCTGCCTCCCCTCCAAGCCCCTCCTGGGCCTGGGCTCCTCTGTGATCTACGTCCTGTGGAACCTGCTGCTACTGTGGCCCCGAGTCCTAGCTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTGGTACTGCTGCTCTGGGTTTGGCTTCAAGGCACAGACTTCATGCTGGACCCCAGTTCCGAGTATCCTCTATTTCTCCTGGTTCAACGTGGCTGAGGGCCACACCCGAGGCCGGGCCACCATCCACTTGGCTTTCCTCCTGAGTGACAGCATTCTCCTGGTGGCCACCTGGGTGACTTACAGCTCCTGGCTGCCCAGCAGGATTCCACTGCAGCTGTGGCTGCCTGTAGGAGGCGGATGCTTCTTTCTGGGCCTGGCTCTGTGGCTTGTGTGCTACTGCTGGCTGCACC</dnaseq>| | sequence = <dnaseq>CCCAGATTATCCAAAGAGAGAAGACAGAATCATTATAAATCCCAGTAGCAGTCTGCTGGCCAGCCAAGATGAGACAAAGTTGCCTAAAATAAGACTTTTTTGACTATTCTAAATTGACTCCTCTTGACCAGCACTGCTTCATCCAAGCTGCTGACCTCCTCATGGCCGACTTCAAAGTGCTCAGTAGTCAGGACATCATGTGGGCCCTGCACGAGCTCAAAGGACACTATGCAATCACCCGAAAGAAGGAACCTTTCCCTTTCTCAATTTTTAGGCCTTTTCTGATGCCATTAAAAAATGGCAGGAGCTATCACCAGAAACCAGTGGAAAAAGGAAAAAGAGAAAAGAAATGAACCAGTATTCTTAAATTGATTTCAAGTTTGAACAAGGGGTTGGCATCTGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGATTACCACCAGGCCTTGCACACCTGCCTCCCCTCCAAGCCCCTCCTGGGCCTGGGCTCCTCTGTGATCTACGTCCTGTGGAACCTGCTGCTACTGTGGCCCCGAGTCCTAGCTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTGGTACTGCTGCTCTGGGTTTGGCTTCAAGGCACAGACTTCATGCTGGACCCCAGTTCCGAGTATCCTCTATTTCTCCTGGTTCAACGTGGCTGAGGGCCACACCCGAGGCCGGGCCACCATCCACTTGGCTTTCCTCCTGAGTGACAGCATTCTCCTGGTGGCCACCTGGGTGACTTACAGCTCCTGGCTGCCCAGCAGGATTCCACTGCAGCTGTGGCTGCCTGTAGGAGGCGGATGCTTCTTTCTGGGCCTGGCTCTGTGGCTTGTGTGCTACTGCTGGCTGCACC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG046839]][[Category:Transcripts]] |
Latest revision as of 06:26, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT118895 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
899 nt |
| Genomic location |
chr7+:5023326..5036750 |
| Exon number |
4 |
| Exons |
5023326..5023404,5024541..5024706,5028665..5028808,5036241..5036750 |
| Genome context |
|
| Sequence |
000001 CCCAGATTAT CCAAAGAGAG AAGACAGAAT CATTATAAAT CCCAGTAGCA GTCTGCTGGC CAGCCAAGAT GAGACAAAGT 000080
000081 TGCCTAAAAT AAGACTTTTT TGACTATTCT AAATTGACTC CTCTTGACCA GCACTGCTTC ATCCAAGCTG CTGACCTCCT 000160 000161 CATGGCCGAC TTCAAAGTGC TCAGTAGTCA GGACATCATG TGGGCCCTGC ACGAGCTCAA AGGACACTAT GCAATCACCC 000240 000241 GAAAGAAGGA ACCTTTCCCT TTCTCAATTT TTAGGCCTTT TCTGATGCCA TTAAAAAATG GCAGGAGCTA TCACCAGAAA 000320 000321 CCAGTGGAAA AAGGAAAAAG AGAAAAGAAA TGAACCAGTA TTCTTAAATT GATTTCAAGT TTGAACAAGG GGTTGGCATC 000400 000401 TGCACATCCT TCCTGGGCAT CTCGTGGGCA CTGCTCGATT ACCACCAGGC CTTGCACACC TGCCTCCCCT CCAAGCCCCT 000480 000481 CCTGGGCCTG GGCTCCTCTG TGATCTACGT CCTGTGGAAC CTGCTGCTAC TGTGGCCCCG AGTCCTAGCT GTGGCCCTGT 000560 000561 TCTCAGCCCT CTTCCCCAGT ATGTAGCCCT GCATTTCCTG GGCCTGTGGC TGGTACTGCT GCTCTGGGTT TGGCTTCAAG 000640 000641 GCACAGACTT CATGCTGGAC CCCAGTTCCG AGTATCCTCT ATTTCTCCTG GTTCAACGTG GCTGAGGGCC ACACCCGAGG 000720 000721 CCGGGCCACC ATCCACTTGG CTTTCCTCCT GAGTGACAGC ATTCTCCTGG TGGCCACCTG GGTGACTTAC AGCTCCTGGC 000800 000801 TGCCCAGCAG GATTCCACTG CAGCTGTGGC TGCCTGTAGG AGGCGGATGC TTCTTTCTGG GCCTGGCTCT GTGGCTTGTG 000880 000881 TGCTACTGCT GGCTGCACC |
Predicted Small Protein
| Name | NONHSAT118895_smProtein_161:352 |
| Length | 64 |
| Molecular weight | 7517.8036 |
| Aromaticity | 0.126984126984 |
| Instability index | 55.2031746032 |
| Isoelectric point | 10.1382446289 |
| Runs | 11 |
| Runs residual | 0.0296404275996 |
| Runs probability | 0.0246744070274 |
| Amino acid sequence | MADFKVLSSQDIMWALHELKGHYAITRKKEPFPFSIFRPFLMPLKNGRSYHQKPVEKGKR EKK |
| Secondary structure | LLLEEELLHHHHHHHHHHHLLLEEEELLLLLLLLEEELLLLLLLLLLLLLLLLLHHHLLL LLL |
| PRMN | - |
| PiMo | - |
