Difference between revisions of "NONHSAT120121"
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sequence = <dnaseq>GTTTACACCTTAGGTCATTACATATTAAGAATTTGAATCTATATGGTGACAGGATTTTTTCAGGTTTATCTCACCCCGATGTTGGGGGAAAAAAATCTCCAGAACTCCATAGTCTCTTGAAATGATTGTCCACTGAAGTTCCACGTATTCATAAAGTGCTCCCACAACTTGCTGACAAGCATAGGTATTTTACATCCTGCCATGAGTTTCAAGACATTAACTCCTTTAGCTATCAAAAATGGATAAAAACCACAGGTGACTGACAAGACTTTCACAAGTGCAGACAAAGGTTTGGATTCAAAGCCTGGTCATATGGTTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTCCCACATGTTGCAGGAGGGAATCAGTGGGAGGTAATTGAATCATGGGGGCAGGTCTTTCCCATGCTGTTCTCGTGACAGTGAATAAGTCTTATGAGATTTGATGGTTTCATAAGGGGGAGTTTCCCTGCACAAGCTCTCTTCTCTTGTCTGCTGCCATGTGAGACATGCCTTTCACCTTCTGCCATGACTGTGAGGCCTCCCCAGCCATGTAAAACTGTAAGTCCAATAAACCTCTTTCTTCTGTAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GTTTACACCTTAGGTCATTACATATTAAGAATTTGAATCTATATGGTGACAGGATTTTTTCAGGTTTATCTCACCCCGATGTTGGGGGAAAAAAATCTCCAGAACTCCATAGTCTCTTGAAATGATTGTCCACTGAAGTTCCACGTATTCATAAAGTGCTCCCACAACTTGCTGACAAGCATAGGTATTTTACATCCTGCCATGAGTTTCAAGACATTAACTCCTTTAGCTATCAAAAATGGATAAAAACCACAGGTGACTGACAAGACTTTCACAAGTGCAGACAAAGGTTTGGATTCAAAGCCTGGTCATATGGTTTGGCTGTGTCCCCACCCAAATCTCATCTTGAATTCCCACATGTTGCAGGAGGGAATCAGTGGGAGGTAATTGAATCATGGGGGCAGGTCTTTCCCATGCTGTTCTCGTGACAGTGAATAAGTCTTATGAGATTTGATGGTTTCATAAGGGGGAGTTTCCCTGCACAAGCTCTCTTCTCTTGTCTGCTGCCATGTGAGACATGCCTTTCACCTTCTGCCATGACTGTGAGGCCTCCCCAGCCATGTAAAACTGTAAGTCCAATAAACCTCTTTCTTCTGTAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG047348]] | + | [[Category:Intergenic]][[Category:NONHSAG047348]][[Category:Transcripts]] |
Latest revision as of 06:31, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT120121 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
615 nt |
| Genomic location |
chr7+:36359384..36360088 |
| Exon number |
1 |
| Exons |
36359384..36360088 |
| Genome context |
|
| Sequence |
000001 GTTTACACCT TAGGTCATTA CATATTAAGA ATTTGAATCT ATATGGTGAC AGGATTTTTT CAGGTTTATC TCACCCCGAT 000080
000081 GTTGGGGGAA AAAAATCTCC AGAACTCCAT AGTCTCTTGA AATGATTGTC CACTGAAGTT CCACGTATTC ATAAAGTGCT 000160 000161 CCCACAACTT GCTGACAAGC ATAGGTATTT TACATCCTGC CATGAGTTTC AAGACATTAA CTCCTTTAGC TATCAAAAAT 000240 000241 GGATAAAAAC CACAGGTGAC TGACAAGACT TTCACAAGTG CAGACAAAGG TTTGGATTCA AAGCCTGGTC ATATGGTTTG 000320 000321 GCTGTGTCCC CACCCAAATC TCATCTTGAA TTCCCACATG TTGCAGGAGG GAATCAGTGG GAGGTAATTG AATCATGGGG 000400 000401 GCAGGTCTTT CCCATGCTGT TCTCGTGACA GTGAATAAGT CTTATGAGAT TTGATGGTTT CATAAGGGGG AGTTTCCCTG 000480 000481 CACAAGCTCT CTTCTCTTGT CTGCTGCCAT GTGAGACATG CCTTTCACCT TCTGCCATGA CTGTGAGGCC TCCCCAGCCA 000560 000561 TGTAAAACTG TAAGTCCAAT AAACCTCTTT CTTCTGTAAA AAAAAAAAAA AAAAA |
Predicted Small Protein
| Name | NONHSAT120121_smProtein_443:598 |
| Length | 52 |
| Molecular weight | 5602.661 |
| Aromaticity | 0.0980392156863 |
| Instability index | 66.9470588235 |
| Isoelectric point | 8.52069091797 |
| Runs | 9 |
| Runs residual | 0.0222286934576 |
| Runs probability | 0.0400302263048 |
| Amino acid sequence | MRFDGFIRGSFPAQALFSCLLPCETCLSPSAMTVRPPQPCKTVSPINLFLL |
| Secondary structure | LLLLLEELLLLHHHHHHHLLLLLLLLLLLLLLEELLLLLLLLLLLLLLEEL |
| PRMN | - |
| PiMo | - |
