Difference between revisions of "NONHSAT120744"

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sequence = <dnaseq>TACTTGGCCCACAGGCCTGCGTCCAGCGAGGCCTCCCGTGGCGTCAGCATGTTCATGTGGAGGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCCTGGTACTCTGTCCCCTTCCTGACCCCTCCCTGCAGCCACACGAGGCCCGGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGCAAACAACCTGCCAAGTTGGCAGCTGTTGCTCATGAGCGTCCACCAGGTGGGACAGGGAGTGTTGACCCTGGGCGGCCCCCTGGAGCCACCTGCCCTGAAAGCCCAGGGCCCGGAACCCCACACACTTTGGGGGTGGTGGAACCTGGTAAAAGCCCACCTCCCACCATGGAGGAGGAGCCCTGGGCCCCTAAGGGGAGTCCCTGCTGGACAGTGAGACAGAGAATGACCACGATGATGCTTTCCTCTCCGTCATGTCTCCTGACACCCAGTTGCCTCTACCACTCAGATGATGTCAGGCCCAGTCCCTCAGTGCACTGCGCAAGGAACAGGACTCATCTTCTAAGAAGGATGGACACAGCCCCAACAAATGGGACAAGGACCACATCCGGTGGCCCATGAGTGGTGGTCATGAGCTTCAGCAAGCGGCACCAGGCTCTGGCAGAGCGCACCAGGGTCACCCCAACCAGGATAACTGGACCGTCAGCCAGATCCTGAGCAAGCGGTGGTACACCCTGGGGCCCAATGAGACACAGAAGTACCACGACCTGGCCTTCCAAGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACAAGCCAGGGGCTAGCAGGACTGTACAAGGGCTCGTGGGAGCGGAGCATATCAGAGACGGGCACTGCCACTGCCCCTGGGGTGTCCTCTGAACTCCTGTCAGTTGCAGCCCAGACATTCCAGAGCTCGGATACCAAGGAGCAGCTTCTGTGGGGCAGGACAGCTGCACACAGTCAGGGAACCTGGCTCAGCCTGGCCCAAGCCTTCTCCCACGGGGGGTACACAGCCTGGACGGCAGGGAAATAGACCATCAGGCACTACAGGAACTGACACAAGTGGTGTCTGGCACTGCATCATACTCTGGCCCAAAGCCTTCTACTCAGCATGGAGCTCCAGGCCACTTTGCAGCCCCTGGTGAGGGAGGTGACCAGTGGGCAGCCCTGCTGCTGCCCACCTGAGCTGCTCATTCCCAGCACATGGCCAGTGAGGACACAGCGAGTGACGAGGAGCCCATGGTCATCCATGAGGAGGAGGGGGTGACGATGTCATTGCTGATGATGGCTTTAGCACCACTGACACTGATCTCAAGTTCAAGGAGTGGGTGACCGACTGAGAGTGGGGACGACTCTGGGGAGGAGCCAGAGGGCAACAAGGGCTTTGGTGGGAAGGTATCTGCACCTGTCATTCCTTCTTCCTTTACTCCTGCCGCCCCTTGCTGGATCCTGAGCCCCCAGGGTCCCCCGATCCACCTGCAGTTTTTGGCAAAGTCTATGGTCCCACCCCGTCCTCCTCCTACACACTCCTATGCTTCCTCCTCAACCTTGGCACCCACCTCCTTACTGGGCCCAGGAGCCTTCAAAGCCCAGGAGTCTGGTCAGGGCAGCAGAGCCGGCCCCCTGTGGCCCCTACCCCTGGGGACGGGGGCCCAGGGATGCCTTCCAAGGCGACCTGTTTCCTCCCAATGGATCCTGCCACCTTCTGGTGCAAGAGACCTGAAAGTGTGGGCGACCTGGAGCTACCAGGCCCCTCAGTCATCACGGTCCCTCCCAACACTAAGGCTTTCCTAGGCAGGAGCTGGGCTGAGCCACCCAGGGGGCAGAGCCTGAAGAGGAGAAACTGACTGGGCTTTGGGGGTCGGGGCAGAGGGAACCCCACGGACATGGATCCCGCACTGGAGGACCCCACCACGCTCAAATGCAAGATGAGAAGATGCTCCAGCTGCAGCCCAAAGCCCAACACCCCCAAGTGTGCCATGTGTGATGGGAACAGCTTCCCCTTTGCCTGTACAGGTGGGAGAAGCTGAGGACGGGCTCAGGGAACTGGAGACCGAGAAGGCGGTGTCCTCTTCACTGCATGTGCCCTGGACCAGTGCCGGCCCTGATCATGCAGCTCTTCCAGGCCCACTGCTTCTTCCTGTCCACTAGGCCACAGCCGCCCTCCAGGCCCACTATGCACACATCCTCCCCTCCAAGGTTTCTTCTGCCCCTGCCCTGACTCCCAGCCCTGTGGGGGTCCTGACCCCACCTCACCTGGCTCAGACTCTGACGCTGCCCTGGATGCCCCACCACTGCCTCTGCCCGAGAGTCACGTGAGGCTGAGAGTAGGGGCAGGGGCAGCAGTGGTGCCAGTTGGGGGGCAGTCCAGTGGGAGGAGCCTCAGCCTCGCAGGCTGCTCCGTGGGACTGATGACTGCATGATCTTCTGGGCACCTCACGGATCTTCAACTGCAGGTGAAACGGATGCTGGTGGTGGGTGCAGGGCCGCTGGGAGCCGCTGCATGGGTCCCAGAGGCTAGACTGGGGCAGGGGCCAACTGAAGCTGTTGGGGCAGCATGAGCAGGATGTTCTACACACAAACCTTGGAGAAGATGTGTGCATAGCGGGTCCACTGCTGCTGCCCCTGCCCTGACTCCCAGCCCTGTCTGACCCCACCTCACCCTGCTCAGGCTCTGGTGCAACCCTGGCTGCCCTGCCACTGCCTCTGCCCCAGAGTTGGGACCTTGACAGCCTGGCTGGAAGGGGACACCCCAGCCCTGCCTCAACACCTGGGGGTCTCCATAACTACGACAGGCAGGTGA</dnaseq>|
 
sequence = <dnaseq>TACTTGGCCCACAGGCCTGCGTCCAGCGAGGCCTCCCGTGGCGTCAGCATGTTCATGTGGAGGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCCTGGTACTCTGTCCCCTTCCTGACCCCTCCCTGCAGCCACACGAGGCCCGGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGCAAACAACCTGCCAAGTTGGCAGCTGTTGCTCATGAGCGTCCACCAGGTGGGACAGGGAGTGTTGACCCTGGGCGGCCCCCTGGAGCCACCTGCCCTGAAAGCCCAGGGCCCGGAACCCCACACACTTTGGGGGTGGTGGAACCTGGTAAAAGCCCACCTCCCACCATGGAGGAGGAGCCCTGGGCCCCTAAGGGGAGTCCCTGCTGGACAGTGAGACAGAGAATGACCACGATGATGCTTTCCTCTCCGTCATGTCTCCTGACACCCAGTTGCCTCTACCACTCAGATGATGTCAGGCCCAGTCCCTCAGTGCACTGCGCAAGGAACAGGACTCATCTTCTAAGAAGGATGGACACAGCCCCAACAAATGGGACAAGGACCACATCCGGTGGCCCATGAGTGGTGGTCATGAGCTTCAGCAAGCGGCACCAGGCTCTGGCAGAGCGCACCAGGGTCACCCCAACCAGGATAACTGGACCGTCAGCCAGATCCTGAGCAAGCGGTGGTACACCCTGGGGCCCAATGAGACACAGAAGTACCACGACCTGGCCTTCCAAGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACAAGCCAGGGGCTAGCAGGACTGTACAAGGGCTCGTGGGAGCGGAGCATATCAGAGACGGGCACTGCCACTGCCCCTGGGGTGTCCTCTGAACTCCTGTCAGTTGCAGCCCAGACATTCCAGAGCTCGGATACCAAGGAGCAGCTTCTGTGGGGCAGGACAGCTGCACACAGTCAGGGAACCTGGCTCAGCCTGGCCCAAGCCTTCTCCCACGGGGGGTACACAGCCTGGACGGCAGGGAAATAGACCATCAGGCACTACAGGAACTGACACAAGTGGTGTCTGGCACTGCATCATACTCTGGCCCAAAGCCTTCTACTCAGCATGGAGCTCCAGGCCACTTTGCAGCCCCTGGTGAGGGAGGTGACCAGTGGGCAGCCCTGCTGCTGCCCACCTGAGCTGCTCATTCCCAGCACATGGCCAGTGAGGACACAGCGAGTGACGAGGAGCCCATGGTCATCCATGAGGAGGAGGGGGTGACGATGTCATTGCTGATGATGGCTTTAGCACCACTGACACTGATCTCAAGTTCAAGGAGTGGGTGACCGACTGAGAGTGGGGACGACTCTGGGGAGGAGCCAGAGGGCAACAAGGGCTTTGGTGGGAAGGTATCTGCACCTGTCATTCCTTCTTCCTTTACTCCTGCCGCCCCTTGCTGGATCCTGAGCCCCCAGGGTCCCCCGATCCACCTGCAGTTTTTGGCAAAGTCTATGGTCCCACCCCGTCCTCCTCCTACACACTCCTATGCTTCCTCCTCAACCTTGGCACCCACCTCCTTACTGGGCCCAGGAGCCTTCAAAGCCCAGGAGTCTGGTCAGGGCAGCAGAGCCGGCCCCCTGTGGCCCCTACCCCTGGGGACGGGGGCCCAGGGATGCCTTCCAAGGCGACCTGTTTCCTCCCAATGGATCCTGCCACCTTCTGGTGCAAGAGACCTGAAAGTGTGGGCGACCTGGAGCTACCAGGCCCCTCAGTCATCACGGTCCCTCCCAACACTAAGGCTTTCCTAGGCAGGAGCTGGGCTGAGCCACCCAGGGGGCAGAGCCTGAAGAGGAGAAACTGACTGGGCTTTGGGGGTCGGGGCAGAGGGAACCCCACGGACATGGATCCCGCACTGGAGGACCCCACCACGCTCAAATGCAAGATGAGAAGATGCTCCAGCTGCAGCCCAAAGCCCAACACCCCCAAGTGTGCCATGTGTGATGGGAACAGCTTCCCCTTTGCCTGTACAGGTGGGAGAAGCTGAGGACGGGCTCAGGGAACTGGAGACCGAGAAGGCGGTGTCCTCTTCACTGCATGTGCCCTGGACCAGTGCCGGCCCTGATCATGCAGCTCTTCCAGGCCCACTGCTTCTTCCTGTCCACTAGGCCACAGCCGCCCTCCAGGCCCACTATGCACACATCCTCCCCTCCAAGGTTTCTTCTGCCCCTGCCCTGACTCCCAGCCCTGTGGGGGTCCTGACCCCACCTCACCTGGCTCAGACTCTGACGCTGCCCTGGATGCCCCACCACTGCCTCTGCCCGAGAGTCACGTGAGGCTGAGAGTAGGGGCAGGGGCAGCAGTGGTGCCAGTTGGGGGGCAGTCCAGTGGGAGGAGCCTCAGCCTCGCAGGCTGCTCCGTGGGACTGATGACTGCATGATCTTCTGGGCACCTCACGGATCTTCAACTGCAGGTGAAACGGATGCTGGTGGTGGGTGCAGGGCCGCTGGGAGCCGCTGCATGGGTCCCAGAGGCTAGACTGGGGCAGGGGCCAACTGAAGCTGTTGGGGCAGCATGAGCAGGATGTTCTACACACAAACCTTGGAGAAGATGTGTGCATAGCGGGTCCACTGCTGCTGCCCCTGCCCTGACTCCCAGCCCTGTCTGACCCCACCTCACCCTGCTCAGGCTCTGGTGCAACCCTGGCTGCCCTGCCACTGCCTCTGCCCCAGAGTTGGGACCTTGACAGCCTGGCTGGAAGGGGACACCCCAGCCCTGCCTCAACACCTGGGGGTCTCCATAACTACGACAGGCAGGTGA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG047657]][[Category:Transcripts]]

Latest revision as of 06:34, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT120744

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2813 nt

Genomic location

chr7+:56430151..56432963

Exon number

1

Exons

56430151..56432963

Genome context

Sequence
000001 TACTTGGCCC ACAGGCCTGC GTCCAGCGAG GCCTCCCGTG GCGTCAGCAT GTTCATGTGG AGGAATGTGG AACCTCGCTC 000080
000081 TGTGGCTGTG TTCCCCTGGT ACTCTGTCCC CTTCCTGACC CCTCCCTGCA GCCACACGAG GCCCGGCAAC CTGCCAGTCA 000160
000161 CTCAGTGGCC TCCAACCAGA GCAAACAACC TGCCAAGTTG GCAGCTGTTG CTCATGAGCG TCCACCAGGT GGGACAGGGA 000240
000241 GTGTTGACCC TGGGCGGCCC CCTGGAGCCA CCTGCCCTGA AAGCCCAGGG CCCGGAACCC CACACACTTT GGGGGTGGTG 000320
000321 GAACCTGGTA AAAGCCCACC TCCCACCATG GAGGAGGAGC CCTGGGCCCC TAAGGGGAGT CCCTGCTGGA CAGTGAGACA 000400
000401 GAGAATGACC ACGATGATGC TTTCCTCTCC GTCATGTCTC CTGACACCCA GTTGCCTCTA CCACTCAGAT GATGTCAGGC 000480
000481 CCAGTCCCTC AGTGCACTGC GCAAGGAACA GGACTCATCT TCTAAGAAGG ATGGACACAG CCCCAACAAA TGGGACAAGG 000560
000561 ACCACATCCG GTGGCCCATG AGTGGTGGTC ATGAGCTTCA GCAAGCGGCA CCAGGCTCTG GCAGAGCGCA CCAGGGTCAC 000640
000641 CCCAACCAGG ATAACTGGAC CGTCAGCCAG ATCCTGAGCA AGCGGTGGTA CACCCTGGGG CCCAATGAGA CACAGAAGTA 000720
000721 CCACGACCTG GCCTTCCAAG TGAAGGTGGC CCACTTGCAA CAAGGACCGA AAGAAGTCCA GCTCAGAGGC CAAGCCCACA 000800
000801 AGCCAGGGGC TAGCAGGACT GTACAAGGGC TCGTGGGAGC GGAGCATATC AGAGACGGGC ACTGCCACTG CCCCTGGGGT 000880
000881 GTCCTCTGAA CTCCTGTCAG TTGCAGCCCA GACATTCCAG AGCTCGGATA CCAAGGAGCA GCTTCTGTGG GGCAGGACAG 000960
000961 CTGCACACAG TCAGGGAACC TGGCTCAGCC TGGCCCAAGC CTTCTCCCAC GGGGGGTACA CAGCCTGGAC GGCAGGGAAA 001040
001041 TAGACCATCA GGCACTACAG GAACTGACAC AAGTGGTGTC TGGCACTGCA TCATACTCTG GCCCAAAGCC TTCTACTCAG 001120
001121 CATGGAGCTC CAGGCCACTT TGCAGCCCCT GGTGAGGGAG GTGACCAGTG GGCAGCCCTG CTGCTGCCCA CCTGAGCTGC 001200
001201 TCATTCCCAG CACATGGCCA GTGAGGACAC AGCGAGTGAC GAGGAGCCCA TGGTCATCCA TGAGGAGGAG GGGGTGACGA 001280
001281 TGTCATTGCT GATGATGGCT TTAGCACCAC TGACACTGAT CTCAAGTTCA AGGAGTGGGT GACCGACTGA GAGTGGGGAC 001360
001361 GACTCTGGGG AGGAGCCAGA GGGCAACAAG GGCTTTGGTG GGAAGGTATC TGCACCTGTC ATTCCTTCTT CCTTTACTCC 001440
001441 TGCCGCCCCT TGCTGGATCC TGAGCCCCCA GGGTCCCCCG ATCCACCTGC AGTTTTTGGC AAAGTCTATG GTCCCACCCC 001520
001521 GTCCTCCTCC TACACACTCC TATGCTTCCT CCTCAACCTT GGCACCCACC TCCTTACTGG GCCCAGGAGC CTTCAAAGCC 001600
001601 CAGGAGTCTG GTCAGGGCAG CAGAGCCGGC CCCCTGTGGC CCCTACCCCT GGGGACGGGG GCCCAGGGAT GCCTTCCAAG 001680
001681 GCGACCTGTT TCCTCCCAAT GGATCCTGCC ACCTTCTGGT GCAAGAGACC TGAAAGTGTG GGCGACCTGG AGCTACCAGG 001760
001761 CCCCTCAGTC ATCACGGTCC CTCCCAACAC TAAGGCTTTC CTAGGCAGGA GCTGGGCTGA GCCACCCAGG GGGCAGAGCC 001840
001841 TGAAGAGGAG AAACTGACTG GGCTTTGGGG GTCGGGGCAG AGGGAACCCC ACGGACATGG ATCCCGCACT GGAGGACCCC 001920
001921 ACCACGCTCA AATGCAAGAT GAGAAGATGC TCCAGCTGCA GCCCAAAGCC CAACACCCCC AAGTGTGCCA TGTGTGATGG 002000
002001 GAACAGCTTC CCCTTTGCCT GTACAGGTGG GAGAAGCTGA GGACGGGCTC AGGGAACTGG AGACCGAGAA GGCGGTGTCC 002080
002081 TCTTCACTGC ATGTGCCCTG GACCAGTGCC GGCCCTGATC ATGCAGCTCT TCCAGGCCCA CTGCTTCTTC CTGTCCACTA 002160
002161 GGCCACAGCC GCCCTCCAGG CCCACTATGC ACACATCCTC CCCTCCAAGG TTTCTTCTGC CCCTGCCCTG ACTCCCAGCC 002240
002241 CTGTGGGGGT CCTGACCCCA CCTCACCTGG CTCAGACTCT GACGCTGCCC TGGATGCCCC ACCACTGCCT CTGCCCGAGA 002320
002321 GTCACGTGAG GCTGAGAGTA GGGGCAGGGG CAGCAGTGGT GCCAGTTGGG GGGCAGTCCA GTGGGAGGAG CCTCAGCCTC 002400
002401 GCAGGCTGCT CCGTGGGACT GATGACTGCA TGATCTTCTG GGCACCTCAC GGATCTTCAA CTGCAGGTGA AACGGATGCT 002480
002481 GGTGGTGGGT GCAGGGCCGC TGGGAGCCGC TGCATGGGTC CCAGAGGCTA GACTGGGGCA GGGGCCAACT GAAGCTGTTG 002560
002561 GGGCAGCATG AGCAGGATGT TCTACACACA AACCTTGGAG AAGATGTGTG CATAGCGGGT CCACTGCTGC TGCCCCTGCC 002640
002641 CTGACTCCCA GCCCTGTCTG ACCCCACCTC ACCCTGCTCA GGCTCTGGTG CAACCCTGGC TGCCCTGCCA CTGCCTCTGC 002720
002721 CCCAGAGTTG GGACCTTGAC AGCCTGGCTG GAAGGGGACA CCCCAGCCCT GCCTCAACAC CTGGGGGTCT CCATAACTAC 002800
002801 GACAGGCAGG TGA
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Predicted Small Protein

Name NONHSAT120744_smProtein_347:580
Length 78
Molecular weight 8586.7233
Aromaticity 0.038961038961
Instability index 77.6974025974
Isoelectric point 8.93463134766
Runs 14
Runs residual 0.0457368718238
Runs probability 0.0334872687813
Amino acid sequence MEEEPWAPKGSPCWTVRQRMTTMMLSSPSCLLTPSCLYHSDDVRPSPSVHCARNRTHLLR
RMDTAPTNGTRTTSGGP
Secondary structure LLLLLLLLLLLLLLEEELEEEEEEELLLLEELLLLEEEELLLLLLLLLEEELLLLEEHHH
HLLLLLLLLLLLLLLLL
PRMN -
PiMo -