Difference between revisions of "NONHSAT120744"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>TACTTGGCCCACAGGCCTGCGTCCAGCGAGGCCTCCCGTGGCGTCAGCATGTTCATGTGGAGGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCCTGGTACTCTGTCCCCTTCCTGACCCCTCCCTGCAGCCACACGAGGCCCGGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGCAAACAACCTGCCAAGTTGGCAGCTGTTGCTCATGAGCGTCCACCAGGTGGGACAGGGAGTGTTGACCCTGGGCGGCCCCCTGGAGCCACCTGCCCTGAAAGCCCAGGGCCCGGAACCCCACACACTTTGGGGGTGGTGGAACCTGGTAAAAGCCCACCTCCCACCATGGAGGAGGAGCCCTGGGCCCCTAAGGGGAGTCCCTGCTGGACAGTGAGACAGAGAATGACCACGATGATGCTTTCCTCTCCGTCATGTCTCCTGACACCCAGTTGCCTCTACCACTCAGATGATGTCAGGCCCAGTCCCTCAGTGCACTGCGCAAGGAACAGGACTCATCTTCTAAGAAGGATGGACACAGCCCCAACAAATGGGACAAGGACCACATCCGGTGGCCCATGAGTGGTGGTCATGAGCTTCAGCAAGCGGCACCAGGCTCTGGCAGAGCGCACCAGGGTCACCCCAACCAGGATAACTGGACCGTCAGCCAGATCCTGAGCAAGCGGTGGTACACCCTGGGGCCCAATGAGACACAGAAGTACCACGACCTGGCCTTCCAAGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACAAGCCAGGGGCTAGCAGGACTGTACAAGGGCTCGTGGGAGCGGAGCATATCAGAGACGGGCACTGCCACTGCCCCTGGGGTGTCCTCTGAACTCCTGTCAGTTGCAGCCCAGACATTCCAGAGCTCGGATACCAAGGAGCAGCTTCTGTGGGGCAGGACAGCTGCACACAGTCAGGGAACCTGGCTCAGCCTGGCCCAAGCCTTCTCCCACGGGGGGTACACAGCCTGGACGGCAGGGAAATAGACCATCAGGCACTACAGGAACTGACACAAGTGGTGTCTGGCACTGCATCATACTCTGGCCCAAAGCCTTCTACTCAGCATGGAGCTCCAGGCCACTTTGCAGCCCCTGGTGAGGGAGGTGACCAGTGGGCAGCCCTGCTGCTGCCCACCTGAGCTGCTCATTCCCAGCACATGGCCAGTGAGGACACAGCGAGTGACGAGGAGCCCATGGTCATCCATGAGGAGGAGGGGGTGACGATGTCATTGCTGATGATGGCTTTAGCACCACTGACACTGATCTCAAGTTCAAGGAGTGGGTGACCGACTGAGAGTGGGGACGACTCTGGGGAGGAGCCAGAGGGCAACAAGGGCTTTGGTGGGAAGGTATCTGCACCTGTCATTCCTTCTTCCTTTACTCCTGCCGCCCCTTGCTGGATCCTGAGCCCCCAGGGTCCCCCGATCCACCTGCAGTTTTTGGCAAAGTCTATGGTCCCACCCCGTCCTCCTCCTACACACTCCTATGCTTCCTCCTCAACCTTGGCACCCACCTCCTTACTGGGCCCAGGAGCCTTCAAAGCCCAGGAGTCTGGTCAGGGCAGCAGAGCCGGCCCCCTGTGGCCCCTACCCCTGGGGACGGGGGCCCAGGGATGCCTTCCAAGGCGACCTGTTTCCTCCCAATGGATCCTGCCACCTTCTGGTGCAAGAGACCTGAAAGTGTGGGCGACCTGGAGCTACCAGGCCCCTCAGTCATCACGGTCCCTCCCAACACTAAGGCTTTCCTAGGCAGGAGCTGGGCTGAGCCACCCAGGGGGCAGAGCCTGAAGAGGAGAAACTGACTGGGCTTTGGGGGTCGGGGCAGAGGGAACCCCACGGACATGGATCCCGCACTGGAGGACCCCACCACGCTCAAATGCAAGATGAGAAGATGCTCCAGCTGCAGCCCAAAGCCCAACACCCCCAAGTGTGCCATGTGTGATGGGAACAGCTTCCCCTTTGCCTGTACAGGTGGGAGAAGCTGAGGACGGGCTCAGGGAACTGGAGACCGAGAAGGCGGTGTCCTCTTCACTGCATGTGCCCTGGACCAGTGCCGGCCCTGATCATGCAGCTCTTCCAGGCCCACTGCTTCTTCCTGTCCACTAGGCCACAGCCGCCCTCCAGGCCCACTATGCACACATCCTCCCCTCCAAGGTTTCTTCTGCCCCTGCCCTGACTCCCAGCCCTGTGGGGGTCCTGACCCCACCTCACCTGGCTCAGACTCTGACGCTGCCCTGGATGCCCCACCACTGCCTCTGCCCGAGAGTCACGTGAGGCTGAGAGTAGGGGCAGGGGCAGCAGTGGTGCCAGTTGGGGGGCAGTCCAGTGGGAGGAGCCTCAGCCTCGCAGGCTGCTCCGTGGGACTGATGACTGCATGATCTTCTGGGCACCTCACGGATCTTCAACTGCAGGTGAAACGGATGCTGGTGGTGGGTGCAGGGCCGCTGGGAGCCGCTGCATGGGTCCCAGAGGCTAGACTGGGGCAGGGGCCAACTGAAGCTGTTGGGGCAGCATGAGCAGGATGTTCTACACACAAACCTTGGAGAAGATGTGTGCATAGCGGGTCCACTGCTGCTGCCCCTGCCCTGACTCCCAGCCCTGTCTGACCCCACCTCACCCTGCTCAGGCTCTGGTGCAACCCTGGCTGCCCTGCCACTGCCTCTGCCCCAGAGTTGGGACCTTGACAGCCTGGCTGGAAGGGGACACCCCAGCCCTGCCTCAACACCTGGGGGTCTCCATAACTACGACAGGCAGGTGA</dnaseq>| | sequence = <dnaseq>TACTTGGCCCACAGGCCTGCGTCCAGCGAGGCCTCCCGTGGCGTCAGCATGTTCATGTGGAGGAATGTGGAACCTCGCTCTGTGGCTGTGTTCCCCTGGTACTCTGTCCCCTTCCTGACCCCTCCCTGCAGCCACACGAGGCCCGGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGCAAACAACCTGCCAAGTTGGCAGCTGTTGCTCATGAGCGTCCACCAGGTGGGACAGGGAGTGTTGACCCTGGGCGGCCCCCTGGAGCCACCTGCCCTGAAAGCCCAGGGCCCGGAACCCCACACACTTTGGGGGTGGTGGAACCTGGTAAAAGCCCACCTCCCACCATGGAGGAGGAGCCCTGGGCCCCTAAGGGGAGTCCCTGCTGGACAGTGAGACAGAGAATGACCACGATGATGCTTTCCTCTCCGTCATGTCTCCTGACACCCAGTTGCCTCTACCACTCAGATGATGTCAGGCCCAGTCCCTCAGTGCACTGCGCAAGGAACAGGACTCATCTTCTAAGAAGGATGGACACAGCCCCAACAAATGGGACAAGGACCACATCCGGTGGCCCATGAGTGGTGGTCATGAGCTTCAGCAAGCGGCACCAGGCTCTGGCAGAGCGCACCAGGGTCACCCCAACCAGGATAACTGGACCGTCAGCCAGATCCTGAGCAAGCGGTGGTACACCCTGGGGCCCAATGAGACACAGAAGTACCACGACCTGGCCTTCCAAGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACAAGCCAGGGGCTAGCAGGACTGTACAAGGGCTCGTGGGAGCGGAGCATATCAGAGACGGGCACTGCCACTGCCCCTGGGGTGTCCTCTGAACTCCTGTCAGTTGCAGCCCAGACATTCCAGAGCTCGGATACCAAGGAGCAGCTTCTGTGGGGCAGGACAGCTGCACACAGTCAGGGAACCTGGCTCAGCCTGGCCCAAGCCTTCTCCCACGGGGGGTACACAGCCTGGACGGCAGGGAAATAGACCATCAGGCACTACAGGAACTGACACAAGTGGTGTCTGGCACTGCATCATACTCTGGCCCAAAGCCTTCTACTCAGCATGGAGCTCCAGGCCACTTTGCAGCCCCTGGTGAGGGAGGTGACCAGTGGGCAGCCCTGCTGCTGCCCACCTGAGCTGCTCATTCCCAGCACATGGCCAGTGAGGACACAGCGAGTGACGAGGAGCCCATGGTCATCCATGAGGAGGAGGGGGTGACGATGTCATTGCTGATGATGGCTTTAGCACCACTGACACTGATCTCAAGTTCAAGGAGTGGGTGACCGACTGAGAGTGGGGACGACTCTGGGGAGGAGCCAGAGGGCAACAAGGGCTTTGGTGGGAAGGTATCTGCACCTGTCATTCCTTCTTCCTTTACTCCTGCCGCCCCTTGCTGGATCCTGAGCCCCCAGGGTCCCCCGATCCACCTGCAGTTTTTGGCAAAGTCTATGGTCCCACCCCGTCCTCCTCCTACACACTCCTATGCTTCCTCCTCAACCTTGGCACCCACCTCCTTACTGGGCCCAGGAGCCTTCAAAGCCCAGGAGTCTGGTCAGGGCAGCAGAGCCGGCCCCCTGTGGCCCCTACCCCTGGGGACGGGGGCCCAGGGATGCCTTCCAAGGCGACCTGTTTCCTCCCAATGGATCCTGCCACCTTCTGGTGCAAGAGACCTGAAAGTGTGGGCGACCTGGAGCTACCAGGCCCCTCAGTCATCACGGTCCCTCCCAACACTAAGGCTTTCCTAGGCAGGAGCTGGGCTGAGCCACCCAGGGGGCAGAGCCTGAAGAGGAGAAACTGACTGGGCTTTGGGGGTCGGGGCAGAGGGAACCCCACGGACATGGATCCCGCACTGGAGGACCCCACCACGCTCAAATGCAAGATGAGAAGATGCTCCAGCTGCAGCCCAAAGCCCAACACCCCCAAGTGTGCCATGTGTGATGGGAACAGCTTCCCCTTTGCCTGTACAGGTGGGAGAAGCTGAGGACGGGCTCAGGGAACTGGAGACCGAGAAGGCGGTGTCCTCTTCACTGCATGTGCCCTGGACCAGTGCCGGCCCTGATCATGCAGCTCTTCCAGGCCCACTGCTTCTTCCTGTCCACTAGGCCACAGCCGCCCTCCAGGCCCACTATGCACACATCCTCCCCTCCAAGGTTTCTTCTGCCCCTGCCCTGACTCCCAGCCCTGTGGGGGTCCTGACCCCACCTCACCTGGCTCAGACTCTGACGCTGCCCTGGATGCCCCACCACTGCCTCTGCCCGAGAGTCACGTGAGGCTGAGAGTAGGGGCAGGGGCAGCAGTGGTGCCAGTTGGGGGGCAGTCCAGTGGGAGGAGCCTCAGCCTCGCAGGCTGCTCCGTGGGACTGATGACTGCATGATCTTCTGGGCACCTCACGGATCTTCAACTGCAGGTGAAACGGATGCTGGTGGTGGGTGCAGGGCCGCTGGGAGCCGCTGCATGGGTCCCAGAGGCTAGACTGGGGCAGGGGCCAACTGAAGCTGTTGGGGCAGCATGAGCAGGATGTTCTACACACAAACCTTGGAGAAGATGTGTGCATAGCGGGTCCACTGCTGCTGCCCCTGCCCTGACTCCCAGCCCTGTCTGACCCCACCTCACCCTGCTCAGGCTCTGGTGCAACCCTGGCTGCCCTGCCACTGCCTCTGCCCCAGAGTTGGGACCTTGACAGCCTGGCTGGAAGGGGACACCCCAGCCCTGCCTCAACACCTGGGGGTCTCCATAACTACGACAGGCAGGTGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG047657]][[Category:Transcripts]] |
Latest revision as of 06:34, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT120744 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2813 nt |
Genomic location |
chr7+:56430151..56432963 |
Exon number |
1 |
Exons |
56430151..56432963 |
Genome context |
|
Sequence |
000001 TACTTGGCCC ACAGGCCTGC GTCCAGCGAG GCCTCCCGTG GCGTCAGCAT GTTCATGTGG AGGAATGTGG AACCTCGCTC 000080
000081 TGTGGCTGTG TTCCCCTGGT ACTCTGTCCC CTTCCTGACC CCTCCCTGCA GCCACACGAG GCCCGGCAAC CTGCCAGTCA 000160 000161 CTCAGTGGCC TCCAACCAGA GCAAACAACC TGCCAAGTTG GCAGCTGTTG CTCATGAGCG TCCACCAGGT GGGACAGGGA 000240 000241 GTGTTGACCC TGGGCGGCCC CCTGGAGCCA CCTGCCCTGA AAGCCCAGGG CCCGGAACCC CACACACTTT GGGGGTGGTG 000320 000321 GAACCTGGTA AAAGCCCACC TCCCACCATG GAGGAGGAGC CCTGGGCCCC TAAGGGGAGT CCCTGCTGGA CAGTGAGACA 000400 000401 GAGAATGACC ACGATGATGC TTTCCTCTCC GTCATGTCTC CTGACACCCA GTTGCCTCTA CCACTCAGAT GATGTCAGGC 000480 000481 CCAGTCCCTC AGTGCACTGC GCAAGGAACA GGACTCATCT TCTAAGAAGG ATGGACACAG CCCCAACAAA TGGGACAAGG 000560 000561 ACCACATCCG GTGGCCCATG AGTGGTGGTC ATGAGCTTCA GCAAGCGGCA CCAGGCTCTG GCAGAGCGCA CCAGGGTCAC 000640 000641 CCCAACCAGG ATAACTGGAC CGTCAGCCAG ATCCTGAGCA AGCGGTGGTA CACCCTGGGG CCCAATGAGA CACAGAAGTA 000720 000721 CCACGACCTG GCCTTCCAAG TGAAGGTGGC CCACTTGCAA CAAGGACCGA AAGAAGTCCA GCTCAGAGGC CAAGCCCACA 000800 000801 AGCCAGGGGC TAGCAGGACT GTACAAGGGC TCGTGGGAGC GGAGCATATC AGAGACGGGC ACTGCCACTG CCCCTGGGGT 000880 000881 GTCCTCTGAA CTCCTGTCAG TTGCAGCCCA GACATTCCAG AGCTCGGATA CCAAGGAGCA GCTTCTGTGG GGCAGGACAG 000960 000961 CTGCACACAG TCAGGGAACC TGGCTCAGCC TGGCCCAAGC CTTCTCCCAC GGGGGGTACA CAGCCTGGAC GGCAGGGAAA 001040 001041 TAGACCATCA GGCACTACAG GAACTGACAC AAGTGGTGTC TGGCACTGCA TCATACTCTG GCCCAAAGCC TTCTACTCAG 001120 001121 CATGGAGCTC CAGGCCACTT TGCAGCCCCT GGTGAGGGAG GTGACCAGTG GGCAGCCCTG CTGCTGCCCA CCTGAGCTGC 001200 001201 TCATTCCCAG CACATGGCCA GTGAGGACAC AGCGAGTGAC GAGGAGCCCA TGGTCATCCA TGAGGAGGAG GGGGTGACGA 001280 001281 TGTCATTGCT GATGATGGCT TTAGCACCAC TGACACTGAT CTCAAGTTCA AGGAGTGGGT GACCGACTGA GAGTGGGGAC 001360 001361 GACTCTGGGG AGGAGCCAGA GGGCAACAAG GGCTTTGGTG GGAAGGTATC TGCACCTGTC ATTCCTTCTT CCTTTACTCC 001440 001441 TGCCGCCCCT TGCTGGATCC TGAGCCCCCA GGGTCCCCCG ATCCACCTGC AGTTTTTGGC AAAGTCTATG GTCCCACCCC 001520 001521 GTCCTCCTCC TACACACTCC TATGCTTCCT CCTCAACCTT GGCACCCACC TCCTTACTGG GCCCAGGAGC CTTCAAAGCC 001600 001601 CAGGAGTCTG GTCAGGGCAG CAGAGCCGGC CCCCTGTGGC CCCTACCCCT GGGGACGGGG GCCCAGGGAT GCCTTCCAAG 001680 001681 GCGACCTGTT TCCTCCCAAT GGATCCTGCC ACCTTCTGGT GCAAGAGACC TGAAAGTGTG GGCGACCTGG AGCTACCAGG 001760 001761 CCCCTCAGTC ATCACGGTCC CTCCCAACAC TAAGGCTTTC CTAGGCAGGA GCTGGGCTGA GCCACCCAGG GGGCAGAGCC 001840 001841 TGAAGAGGAG AAACTGACTG GGCTTTGGGG GTCGGGGCAG AGGGAACCCC ACGGACATGG ATCCCGCACT GGAGGACCCC 001920 001921 ACCACGCTCA AATGCAAGAT GAGAAGATGC TCCAGCTGCA GCCCAAAGCC CAACACCCCC AAGTGTGCCA TGTGTGATGG 002000 002001 GAACAGCTTC CCCTTTGCCT GTACAGGTGG GAGAAGCTGA GGACGGGCTC AGGGAACTGG AGACCGAGAA GGCGGTGTCC 002080 002081 TCTTCACTGC ATGTGCCCTG GACCAGTGCC GGCCCTGATC ATGCAGCTCT TCCAGGCCCA CTGCTTCTTC CTGTCCACTA 002160 002161 GGCCACAGCC GCCCTCCAGG CCCACTATGC ACACATCCTC CCCTCCAAGG TTTCTTCTGC CCCTGCCCTG ACTCCCAGCC 002240 002241 CTGTGGGGGT CCTGACCCCA CCTCACCTGG CTCAGACTCT GACGCTGCCC TGGATGCCCC ACCACTGCCT CTGCCCGAGA 002320 002321 GTCACGTGAG GCTGAGAGTA GGGGCAGGGG CAGCAGTGGT GCCAGTTGGG GGGCAGTCCA GTGGGAGGAG CCTCAGCCTC 002400 002401 GCAGGCTGCT CCGTGGGACT GATGACTGCA TGATCTTCTG GGCACCTCAC GGATCTTCAA CTGCAGGTGA AACGGATGCT 002480 002481 GGTGGTGGGT GCAGGGCCGC TGGGAGCCGC TGCATGGGTC CCAGAGGCTA GACTGGGGCA GGGGCCAACT GAAGCTGTTG 002560 002561 GGGCAGCATG AGCAGGATGT TCTACACACA AACCTTGGAG AAGATGTGTG CATAGCGGGT CCACTGCTGC TGCCCCTGCC 002640 002641 CTGACTCCCA GCCCTGTCTG ACCCCACCTC ACCCTGCTCA GGCTCTGGTG CAACCCTGGC TGCCCTGCCA CTGCCTCTGC 002720 002721 CCCAGAGTTG GGACCTTGAC AGCCTGGCTG GAAGGGGACA CCCCAGCCCT GCCTCAACAC CTGGGGGTCT CCATAACTAC 002800 002801 GACAGGCAGG TGA |
Predicted Small Protein
Name | NONHSAT120744_smProtein_347:580 |
Length | 78 |
Molecular weight | 8586.7233 |
Aromaticity | 0.038961038961 |
Instability index | 77.6974025974 |
Isoelectric point | 8.93463134766 |
Runs | 14 |
Runs residual | 0.0457368718238 |
Runs probability | 0.0334872687813 |
Amino acid sequence | MEEEPWAPKGSPCWTVRQRMTTMMLSSPSCLLTPSCLYHSDDVRPSPSVHCARNRTHLLR RMDTAPTNGTRTTSGGP |
Secondary structure | LLLLLLLLLLLLLLEEELEEEEEEELLLLEELLLLEEEELLLLLLLLLEEELLLLEEHHH HLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |