Difference between revisions of "NONHSAT121709"

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sequence = <dnaseq>CGGGAGGAGGCAGGGGAGGAGGGGCGCGCGCGCCGGGTGGGGAGCCACGGAGGGCTTCGCCGCTGCCTCCCTCCCTCCCTCCGCAGCTTGACCCGGTAGTGAAGGCAGAGAGAGAGGCAGGCTGGGTCCGCCTGGCAGCCTACGGGAGGAGGCGGGAGCCGGGAAGGAGGGGAGCCTAGGCCCGGCGTGGGGAGGCCGGCAGGAAGGGCCTCGAGCCCAGTGCGGACCTTTCTTCAGCCTCTGTGCGACCGAGCCGCGCGCCAGGCTCCTGTGCGAGGAGGACGCGCTGACTCCCTCCGACCTGGGCTCCGATGGAGCAGAAATAGCGGGACCTGGACTTGTGGCGCGCCTGGTGCCACATCTCGGGCTCTGCGAGCGTCCTGGCGCGGGATCCTGCCTGTTCCCTTCTTTTCGCCAGGTTTGCATCCAAGAGAGGGGAGGACAGGGGCAAAAGGATGCAGGGAGGCTGCTGATTTCCACTGAAGAGCTAATTTCCTGTGAGACATTAACAGTGATTTAAGAAAAAGATTCCTGTAACTGTAATGTCTTACAATAACAGAATGCAGGAGAGCACATATCAATGAAGAAAAGACAAAATGTACTTATCCATGAAGCTGAGGTTAAGAAACCAGTGTCTTCAAGAGCCAGGGACAGCACTGGGTCTGTGCAGAGTTGAGAGATGGTGATGACATGTGGTTTCCAGCATTCCTCACCCAGTCCAGGGACACTGTGGGTGTGCCCAGCTTAAGTCCAgtaactggaaatacaagcccaagttctggagagtttgagctgcagagatatatatgggaacactttgaatcttgactcattggcc</dnaseq>|
 
sequence = <dnaseq>CGGGAGGAGGCAGGGGAGGAGGGGCGCGCGCGCCGGGTGGGGAGCCACGGAGGGCTTCGCCGCTGCCTCCCTCCCTCCCTCCGCAGCTTGACCCGGTAGTGAAGGCAGAGAGAGAGGCAGGCTGGGTCCGCCTGGCAGCCTACGGGAGGAGGCGGGAGCCGGGAAGGAGGGGAGCCTAGGCCCGGCGTGGGGAGGCCGGCAGGAAGGGCCTCGAGCCCAGTGCGGACCTTTCTTCAGCCTCTGTGCGACCGAGCCGCGCGCCAGGCTCCTGTGCGAGGAGGACGCGCTGACTCCCTCCGACCTGGGCTCCGATGGAGCAGAAATAGCGGGACCTGGACTTGTGGCGCGCCTGGTGCCACATCTCGGGCTCTGCGAGCGTCCTGGCGCGGGATCCTGCCTGTTCCCTTCTTTTCGCCAGGTTTGCATCCAAGAGAGGGGAGGACAGGGGCAAAAGGATGCAGGGAGGCTGCTGATTTCCACTGAAGAGCTAATTTCCTGTGAGACATTAACAGTGATTTAAGAAAAAGATTCCTGTAACTGTAATGTCTTACAATAACAGAATGCAGGAGAGCACATATCAATGAAGAAAAGACAAAATGTACTTATCCATGAAGCTGAGGTTAAGAAACCAGTGTCTTCAAGAGCCAGGGACAGCACTGGGTCTGTGCAGAGTTGAGAGATGGTGATGACATGTGGTTTCCAGCATTCCTCACCCAGTCCAGGGACACTGTGGGTGTGCCCAGCTTAAGTCCAgtaactggaaatacaagcccaagttctggagagtttgagctgcagagatatatatgggaacactttgaatcttgactcattggcc</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG048073]][[Category:Transcripts]]

Latest revision as of 06:38, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT121709

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

838 nt

Genomic location

chr7+:79083163..79088996

Exon number

4

Exons

79083163..79083560,79084182..79084323,79088163..79088315,79088852..79088996

Genome context

Sequence
000001 CGGGAGGAGG CAGGGGAGGA GGGGCGCGCG CGCCGGGTGG GGAGCCACGG AGGGCTTCGC CGCTGCCTCC CTCCCTCCCT 000080
000081 CCGCAGCTTG ACCCGGTAGT GAAGGCAGAG AGAGAGGCAG GCTGGGTCCG CCTGGCAGCC TACGGGAGGA GGCGGGAGCC 000160
000161 GGGAAGGAGG GGAGCCTAGG CCCGGCGTGG GGAGGCCGGC AGGAAGGGCC TCGAGCCCAG TGCGGACCTT TCTTCAGCCT 000240
000241 CTGTGCGACC GAGCCGCGCG CCAGGCTCCT GTGCGAGGAG GACGCGCTGA CTCCCTCCGA CCTGGGCTCC GATGGAGCAG 000320
000321 AAATAGCGGG ACCTGGACTT GTGGCGCGCC TGGTGCCACA TCTCGGGCTC TGCGAGCGTC CTGGCGCGGG ATCCTGCCTG 000400
000401 TTCCCTTCTT TTCGCCAGGT TTGCATCCAA GAGAGGGGAG GACAGGGGCA AAAGGATGCA GGGAGGCTGC TGATTTCCAC 000480
000481 TGAAGAGCTA ATTTCCTGTG AGACATTAAC AGTGATTTAA GAAAAAGATT CCTGTAACTG TAATGTCTTA CAATAACAGA 000560
000561 ATGCAGGAGA GCACATATCA ATGAAGAAAA GACAAAATGT ACTTATCCAT GAAGCTGAGG TTAAGAAACC AGTGTCTTCA 000640
000641 AGAGCCAGGG ACAGCACTGG GTCTGTGCAG AGTTGAGAGA TGGTGATGAC ATGTGGTTTC CAGCATTCCT CACCCAGTCC 000720
000721 AGGGACACTG TGGGTGTGCC CAGCTTAAGT CCAgtaactg gaaatacaag cccaagttct ggagagtttg agctgcagag 000800
000801 atatatatgg gaacactttg aatcttgact cattggcc
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Predicted Small Protein

Name NONHSAT121709_smProtein_596:685
Length 30
Molecular weight 3466.1338
Aromaticity 0.0689655172414
Instability index 75.2206896552
Isoelectric point 9.49444580078
Runs 6
Runs residual 0.0073275862069
Runs probability 0.0304863687217
Amino acid sequence MYLSMKLRLRNQCLQEPGTALGLCRVERW
Secondary structure LEEHHHHHHHHHHHLLLLLLLLLLEEELL
PRMN -
PiMo -