Difference between revisions of "NONHSAT122753"
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sequence = <dnaseq>TATCTCAATACTCAAGATTCATACTTGCCCCTAGGCTCCAGAAACACAGTCCAGTTCTTGCTGGTACTTTGTCACCACATTTCACTGTTTTGGCCACAGCAGAGAAGACTCAACTTTAGCAGTTGAGCAGGCAGGCAGAGAGAATCACTCCCATTATATATCAGCCAGTTTCTTGGAGCTGTCAATTCATTTGCCTTTGAGAGAACTGGGGCTCAAACCCCCTTCCCAAATAAGAGGGAAGGAAGTGACCTCCCACTCCAACACCTTATCACTAACACCACATTTCCAGTAGAGCCATGGTTCCTGCTGCCCCTCCTCTTCTCACTCTTCTTACACAGCAGGTGTGGAGGAGTGCAGGGGAAATCATTAGAGTGGAAATGGAGTTTCAAAGTTCTTTCTATTGTTCCTTAGTAATCCTGTTGTCATTGTCTGTTCATCAAAGCATAAAGACATGCATGGCATCTCCCCGCTTACCAGTTCTGGCACGTTTGGGCTTTCCAGCTGACCACCAAGGAGCCCAGGCTGTTTAGTTTATGTAAGTGTATGTTGGTAAAAAACATAAAAATAATTATGCTGGATCTGAGGTGATATGTTTCTAATATTAGCATCATCAACATCAGACGCCTGCCTATGGGCATGTGGTTGCCTGATTTTCTTAAGATGTTTCAGAAATGA</dnaseq>| | sequence = <dnaseq>TATCTCAATACTCAAGATTCATACTTGCCCCTAGGCTCCAGAAACACAGTCCAGTTCTTGCTGGTACTTTGTCACCACATTTCACTGTTTTGGCCACAGCAGAGAAGACTCAACTTTAGCAGTTGAGCAGGCAGGCAGAGAGAATCACTCCCATTATATATCAGCCAGTTTCTTGGAGCTGTCAATTCATTTGCCTTTGAGAGAACTGGGGCTCAAACCCCCTTCCCAAATAAGAGGGAAGGAAGTGACCTCCCACTCCAACACCTTATCACTAACACCACATTTCCAGTAGAGCCATGGTTCCTGCTGCCCCTCCTCTTCTCACTCTTCTTACACAGCAGGTGTGGAGGAGTGCAGGGGAAATCATTAGAGTGGAAATGGAGTTTCAAAGTTCTTTCTATTGTTCCTTAGTAATCCTGTTGTCATTGTCTGTTCATCAAAGCATAAAGACATGCATGGCATCTCCCCGCTTACCAGTTCTGGCACGTTTGGGCTTTCCAGCTGACCACCAAGGAGCCCAGGCTGTTTAGTTTATGTAAGTGTATGTTGGTAAAAAACATAAAAATAATTATGCTGGATCTGAGGTGATATGTTTCTAATATTAGCATCATCAACATCAGACGCCTGCCTATGGGCATGTGGTTGCCTGATTTTCTTAAGATGTTTCAGAAATGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG048544]] | + | [[Category:Intergenic]][[Category:NONHSAG048544]][[Category:Transcripts]] |
Latest revision as of 06:43, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122753 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
675 nt |
Genomic location |
chr7+:109219694..109300946 |
Exon number |
2 |
Exons |
109219694..109220109,109300688..109300946 |
Genome context |
|
Sequence |
000001 TATCTCAATA CTCAAGATTC ATACTTGCCC CTAGGCTCCA GAAACACAGT CCAGTTCTTG CTGGTACTTT GTCACCACAT 000080
000081 TTCACTGTTT TGGCCACAGC AGAGAAGACT CAACTTTAGC AGTTGAGCAG GCAGGCAGAG AGAATCACTC CCATTATATA 000160 000161 TCAGCCAGTT TCTTGGAGCT GTCAATTCAT TTGCCTTTGA GAGAACTGGG GCTCAAACCC CCTTCCCAAA TAAGAGGGAA 000240 000241 GGAAGTGACC TCCCACTCCA ACACCTTATC ACTAACACCA CATTTCCAGT AGAGCCATGG TTCCTGCTGC CCCTCCTCTT 000320 000321 CTCACTCTTC TTACACAGCA GGTGTGGAGG AGTGCAGGGG AAATCATTAG AGTGGAAATG GAGTTTCAAA GTTCTTTCTA 000400 000401 TTGTTCCTTA GTAATCCTGT TGTCATTGTC TGTTCATCAA AGCATAAAGA CATGCATGGC ATCTCCCCGC TTACCAGTTC 000480 000481 TGGCACGTTT GGGCTTTCCA GCTGACCACC AAGGAGCCCA GGCTGTTTAG TTTATGTAAG TGTATGTTGG TAAAAAACAT 000560 000561 AAAAATAATT ATGCTGGATC TGAGGTGATA TGTTTCTAAT ATTAGCATCA TCAACATCAG ACGCCTGCCT ATGGGCATGT 000640 000641 GGTTGCCTGA TTTTCTTAAG ATGTTTCAGA AATGA |
Predicted Small Protein
Name | NONHSAT122753_smProtein_296:529 |
Length | 78 |
Molecular weight | 8420.8713 |
Aromaticity | 0.0649350649351 |
Instability index | 65.5572727273 |
Isoelectric point | 7.85833740234 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0573139984904 |
Amino acid sequence | MVPAAPPLLTLLTQQVWRSAGEIIRVEMEFQSSFYCSLVILLSLSVHQSIKTCMASPRLP VLARLGFPADHQGAQAV |
Secondary structure | LLLLLLHHHHHHHHHHHHHHLLEEEEEEEEELHHHHHHHHHHHHLHHHHHHHHLLLLLLL HHHHLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiii iiiiiiiiiiiiiiiii |