Difference between revisions of "NONHSAT122888"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GGTGGCTCAAGCTCTTCCTCACATGATAGAGAACTACTTTGAGGAGGCTGTGGGAATCACATGTCTGTTGCTAACTTGAGTTCAGCCTTCTCTGTACTTACTTATTCTCTTGACCTTAGCTGTCAAAGAGGTTAAAATTCTTGCTTGGCCTTTATAGTAGGGTAACTATATATTACATTCATGCTGTTTTAGATAGATTGGATACCAGTAATATTGGTAACTTTAGAAAGAGATATAAAGTTTTTAACTTTTGCATTTTTTGCTTTCCTCCATACCCATAACTGGTTTAAATGTGATAGTCAATGAATATTTCCCGAAGGCTTTTCCTTTATCACATAGTCAATGAATACATCTTCAAAATGAAGAACGGTTCCTATATTCTTTGAAAACATTGTTTCATATGACCAGGAACATTTAAGATTTAACAGTAAAGATGTAAAGATGACAATACAGAGTGCCAATTGGATAAGATAGTTGTTTTAGTTTTTCCAGTGGTAACTCTAAAATTAACATTTGATAAATTTGAACTGTGTTGTTTGCCCCCAGAATTGCAAGGAGTCGATTTACTGCAATTCTGTGTAGAGACGCTCCTTCAGTGTATCCTTGACAGTGTCCTGATGGTTGCCAAGGTTTGCCTCAGGTGTTAAAACCAACAGATGTGATTCACTGGTTGGAGAATTTCTTAGAATAAT</dnaseq>| | sequence = <dnaseq>GGTGGCTCAAGCTCTTCCTCACATGATAGAGAACTACTTTGAGGAGGCTGTGGGAATCACATGTCTGTTGCTAACTTGAGTTCAGCCTTCTCTGTACTTACTTATTCTCTTGACCTTAGCTGTCAAAGAGGTTAAAATTCTTGCTTGGCCTTTATAGTAGGGTAACTATATATTACATTCATGCTGTTTTAGATAGATTGGATACCAGTAATATTGGTAACTTTAGAAAGAGATATAAAGTTTTTAACTTTTGCATTTTTTGCTTTCCTCCATACCCATAACTGGTTTAAATGTGATAGTCAATGAATATTTCCCGAAGGCTTTTCCTTTATCACATAGTCAATGAATACATCTTCAAAATGAAGAACGGTTCCTATATTCTTTGAAAACATTGTTTCATATGACCAGGAACATTTAAGATTTAACAGTAAAGATGTAAAGATGACAATACAGAGTGCCAATTGGATAAGATAGTTGTTTTAGTTTTTCCAGTGGTAACTCTAAAATTAACATTTGATAAATTTGAACTGTGTTGTTTGCCCCCAGAATTGCAAGGAGTCGATTTACTGCAATTCTGTGTAGAGACGCTCCTTCAGTGTATCCTTGACAGTGTCCTGATGGTTGCCAAGGTTTGCCTCAGGTGTTAAAACCAACAGATGTGATTCACTGGTTGGAGAATTTCTTAGAATAAT</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:Transcripts]] |
Latest revision as of 06:44, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122888 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
692 nt |
Genomic location |
chr7-:115990884..115998524 |
Exon number |
2 |
Exons |
115990884..115991458,115998408..115998524 |
Genome context |
|
Sequence |
000001 GGTGGCTCAA GCTCTTCCTC ACATGATAGA GAACTACTTT GAGGAGGCTG TGGGAATCAC ATGTCTGTTG CTAACTTGAG 000080
000081 TTCAGCCTTC TCTGTACTTA CTTATTCTCT TGACCTTAGC TGTCAAAGAG GTTAAAATTC TTGCTTGGCC TTTATAGTAG 000160 000161 GGTAACTATA TATTACATTC ATGCTGTTTT AGATAGATTG GATACCAGTA ATATTGGTAA CTTTAGAAAG AGATATAAAG 000240 000241 TTTTTAACTT TTGCATTTTT TGCTTTCCTC CATACCCATA ACTGGTTTAA ATGTGATAGT CAATGAATAT TTCCCGAAGG 000320 000321 CTTTTCCTTT ATCACATAGT CAATGAATAC ATCTTCAAAA TGAAGAACGG TTCCTATATT CTTTGAAAAC ATTGTTTCAT 000400 000401 ATGACCAGGA ACATTTAAGA TTTAACAGTA AAGATGTAAA GATGACAATA CAGAGTGCCA ATTGGATAAG ATAGTTGTTT 000480 000481 TAGTTTTTCC AGTGGTAACT CTAAAATTAA CATTTGATAA ATTTGAACTG TGTTGTTTGC CCCCAGAATT GCAAGGAGTC 000560 000561 GATTTACTGC AATTCTGTGT AGAGACGCTC CTTCAGTGTA TCCTTGACAG TGTCCTGATG GTTGCCAAGG TTTGCCTCAG 000640 000641 GTGTTAAAAC CAACAGATGT GATTCACTGG TTGGAGAATT TCTTAGAATA AT |
Predicted Small Protein
Name | NONHSAT122888_smProtein_302:385 |
Length | 28 |
Molecular weight | 3363.9917 |
Aromaticity | 0.185185185185 |
Instability index | 80.0259259259 |
Isoelectric point | 9.81976318359 |
Runs | 5 |
Runs residual | 0.0214707461084 |
Runs probability | 0.000830242006712 |
Amino acid sequence | MNISRRLFLYHIVNEYIFKMKNGSYIL |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHLLLELL |
PRMN | - |
PiMo | - |