Difference between revisions of "NONHSAT122888"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
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sequence = <dnaseq>GGTGGCTCAAGCTCTTCCTCACATGATAGAGAACTACTTTGAGGAGGCTGTGGGAATCACATGTCTGTTGCTAACTTGAGTTCAGCCTTCTCTGTACTTACTTATTCTCTTGACCTTAGCTGTCAAAGAGGTTAAAATTCTTGCTTGGCCTTTATAGTAGGGTAACTATATATTACATTCATGCTGTTTTAGATAGATTGGATACCAGTAATATTGGTAACTTTAGAAAGAGATATAAAGTTTTTAACTTTTGCATTTTTTGCTTTCCTCCATACCCATAACTGGTTTAAATGTGATAGTCAATGAATATTTCCCGAAGGCTTTTCCTTTATCACATAGTCAATGAATACATCTTCAAAATGAAGAACGGTTCCTATATTCTTTGAAAACATTGTTTCATATGACCAGGAACATTTAAGATTTAACAGTAAAGATGTAAAGATGACAATACAGAGTGCCAATTGGATAAGATAGTTGTTTTAGTTTTTCCAGTGGTAACTCTAAAATTAACATTTGATAAATTTGAACTGTGTTGTTTGCCCCCAGAATTGCAAGGAGTCGATTTACTGCAATTCTGTGTAGAGACGCTCCTTCAGTGTATCCTTGACAGTGTCCTGATGGTTGCCAAGGTTTGCCTCAGGTGTTAAAACCAACAGATGTGATTCACTGGTTGGAGAATTTCTTAGAATAAT</dnaseq>|
 
sequence = <dnaseq>GGTGGCTCAAGCTCTTCCTCACATGATAGAGAACTACTTTGAGGAGGCTGTGGGAATCACATGTCTGTTGCTAACTTGAGTTCAGCCTTCTCTGTACTTACTTATTCTCTTGACCTTAGCTGTCAAAGAGGTTAAAATTCTTGCTTGGCCTTTATAGTAGGGTAACTATATATTACATTCATGCTGTTTTAGATAGATTGGATACCAGTAATATTGGTAACTTTAGAAAGAGATATAAAGTTTTTAACTTTTGCATTTTTTGCTTTCCTCCATACCCATAACTGGTTTAAATGTGATAGTCAATGAATATTTCCCGAAGGCTTTTCCTTTATCACATAGTCAATGAATACATCTTCAAAATGAAGAACGGTTCCTATATTCTTTGAAAACATTGTTTCATATGACCAGGAACATTTAAGATTTAACAGTAAAGATGTAAAGATGACAATACAGAGTGCCAATTGGATAAGATAGTTGTTTTAGTTTTTCCAGTGGTAACTCTAAAATTAACATTTGATAAATTTGAACTGTGTTGTTTGCCCCCAGAATTGCAAGGAGTCGATTTACTGCAATTCTGTGTAGAGACGCTCCTTCAGTGTATCCTTGACAGTGTCCTGATGGTTGCCAAGGTTTGCCTCAGGTGTTAAAACCAACAGATGTGATTCACTGGTTGGAGAATTTCTTAGAATAAT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:Transcripts]]

Latest revision as of 06:44, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT122888

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

692 nt

Genomic location

chr7-:115990884..115998524

Exon number

2

Exons

115990884..115991458,115998408..115998524

Genome context

Sequence
000001 GGTGGCTCAA GCTCTTCCTC ACATGATAGA GAACTACTTT GAGGAGGCTG TGGGAATCAC ATGTCTGTTG CTAACTTGAG 000080
000081 TTCAGCCTTC TCTGTACTTA CTTATTCTCT TGACCTTAGC TGTCAAAGAG GTTAAAATTC TTGCTTGGCC TTTATAGTAG 000160
000161 GGTAACTATA TATTACATTC ATGCTGTTTT AGATAGATTG GATACCAGTA ATATTGGTAA CTTTAGAAAG AGATATAAAG 000240
000241 TTTTTAACTT TTGCATTTTT TGCTTTCCTC CATACCCATA ACTGGTTTAA ATGTGATAGT CAATGAATAT TTCCCGAAGG 000320
000321 CTTTTCCTTT ATCACATAGT CAATGAATAC ATCTTCAAAA TGAAGAACGG TTCCTATATT CTTTGAAAAC ATTGTTTCAT 000400
000401 ATGACCAGGA ACATTTAAGA TTTAACAGTA AAGATGTAAA GATGACAATA CAGAGTGCCA ATTGGATAAG ATAGTTGTTT 000480
000481 TAGTTTTTCC AGTGGTAACT CTAAAATTAA CATTTGATAA ATTTGAACTG TGTTGTTTGC CCCCAGAATT GCAAGGAGTC 000560
000561 GATTTACTGC AATTCTGTGT AGAGACGCTC CTTCAGTGTA TCCTTGACAG TGTCCTGATG GTTGCCAAGG TTTGCCTCAG 000640
000641 GTGTTAAAAC CAACAGATGT GATTCACTGG TTGGAGAATT TCTTAGAATA AT
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Predicted Small Protein

Name NONHSAT122888_smProtein_302:385
Length 28
Molecular weight 3363.9917
Aromaticity 0.185185185185
Instability index 80.0259259259
Isoelectric point 9.81976318359
Runs 5
Runs residual 0.0214707461084
Runs probability 0.000830242006712
Amino acid sequence MNISRRLFLYHIVNEYIFKMKNGSYIL
Secondary structure LLHHHHHHHHHHHHHHHHHHHLLLELL
PRMN -
PiMo -