Difference between revisions of "NONHSAT123132"
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sequence = <dnaseq>AGCTGTGGGAACATTCCTACAAAGCTGATTCTCTTCCGATTCTGCTGGAATCCTGAGTCTCTCTCAAACTGGAATTATCTTAACAATTCTTTTGCTTGAGGTTTCCTGGACGGCATATGTGGATAATGGTCTCACTCTGTCATCCAGGCTGGAGTACAGTGGCATGATCCTAGCTCACTGTAGATTCGAAATCCTGTTCCAGTGGTCCTCCCACCTCAACCTCCTGATCAACTGAACTACAGGAATGCACCACCAAACCCAGCTAATTATTTTTTTGTAGAGGTGGGGGTCTCACAATGCTGCCCAGACTGTTCTCAAACTCCTGGCCTCAAGTGATGTTCCTGCCCAGGCCTAAAATTTTAAGGAGCAGGTGATGTTTAGCCTGGAGAACTGAAGGCTCAGGAAGAACGGGGTCTTCAAACACCTGAAGGACTGTCTCATGAAAAAGAGATGCACAAGACAGGAGAATTGAGCAGAGAGATGTTTAACTCAAATCGAAGAACAAAGACAGCATTGAATCACCACCTATCAAGGGTCTTACTTGAATAGACTTTGGTTTGGATGAGAGGCTATAGAAGAAAACCTCAAAAGTCTCTTCCAATTCTAAGGTTTCATGATTCCAGGCATTTGGAGAATTAGGAAAAATAATCACTTAAAAAAAAAACTATTTAGTGCCAAGCTTCCTAAAACATCTTTAAAATGTCAAATATCCATGAATCATAGGGTATTATCCATTTTATTTGAAAACCATGGAACTCTACTACTAGAACTTCATTCTAGGTTGTTTAAAACAAAGTACAATGCAAAACTGTCTTCTTTCATAAGAACCATTTTCTAGATGGGCATAGATTCTTTGAGGGAATTCTTATCATGCAGATATTTTACTTCAAAATCTAAACTTGTACCACTTTACTGGAATGAAATATTAACGCTATTAATTTAAACATCATAACATTTTTTAAAAATAAGGTGTTAAAATAATATTTATTCATCAATCCTATACCACTACAATATTTTAGATCAGTGATTTAATATCTGAAAAATTTATCACATACTATGCATACCACTGATCAGCAGAGGCTGAAATTTTACTGTAACTTCAGTCCAAAGATACAGGTTTTAATTTGAGTTCTCCATAATTCACAGAAATATTTAAGGGTAAATATAAGTCTTAATTAAAATCCCTATTCTCCCAGCATGTGCTAAACCCACCCTGCTCCACATGCAGACCCTTGGCCCCAAACAATCCCGAGAGGATGTTGGCTCAGAGCAGCAAGGAGCTGACAGATGGGGCATTCGGTAAAGGAGTGGTGCTGGGTTTTTTCATTTTTGTTAGAGACGAAAGCTGTGGGAAAAACATTCTCCACTTAATCTATTTTATTTTCAGCAAGGTTTTACCTGTAAATATTAATTTATACACCAGCAAAACTCACTAGATGCCTGGGCTACATGAATATAAATGAAATAAAGCTATCCAAACTAAAAAATGAAATTTCCTGTATCTTCCTTTCTCAGGCAGAGGAAAAATATCCAAGGATTTAAAATTCTATCCAGTGGTTTCAAAGGCAACAAAAGATCTCACATTGAGCTCTCATTTAAATAGGTGGGGTTAACCAGGGTAGAAATTACAAGTTAAAGTGCTGCAGCATAAAGAAGAAAAATAATCATTTATGCCATTTTCAATACAGAATTTATTTCCAAATCAAAACCCTTTACACTTGGAATATTGTCAAATCTCAAATTTTTACCTTGCTGAGATCTACGACCACCTTTTGAAACTGAGACAGTGTAGGTATGATTACTCCCTGTATACTCAAGGGTTAGGAAAATGGAAAAGAACCGTGAGCCCCTCAAGAATGGTGGCTTTTCTTATTGGAATGAAGTAAATAAAATAAATTCATTGACAATGCAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>AGCTGTGGGAACATTCCTACAAAGCTGATTCTCTTCCGATTCTGCTGGAATCCTGAGTCTCTCTCAAACTGGAATTATCTTAACAATTCTTTTGCTTGAGGTTTCCTGGACGGCATATGTGGATAATGGTCTCACTCTGTCATCCAGGCTGGAGTACAGTGGCATGATCCTAGCTCACTGTAGATTCGAAATCCTGTTCCAGTGGTCCTCCCACCTCAACCTCCTGATCAACTGAACTACAGGAATGCACCACCAAACCCAGCTAATTATTTTTTTGTAGAGGTGGGGGTCTCACAATGCTGCCCAGACTGTTCTCAAACTCCTGGCCTCAAGTGATGTTCCTGCCCAGGCCTAAAATTTTAAGGAGCAGGTGATGTTTAGCCTGGAGAACTGAAGGCTCAGGAAGAACGGGGTCTTCAAACACCTGAAGGACTGTCTCATGAAAAAGAGATGCACAAGACAGGAGAATTGAGCAGAGAGATGTTTAACTCAAATCGAAGAACAAAGACAGCATTGAATCACCACCTATCAAGGGTCTTACTTGAATAGACTTTGGTTTGGATGAGAGGCTATAGAAGAAAACCTCAAAAGTCTCTTCCAATTCTAAGGTTTCATGATTCCAGGCATTTGGAGAATTAGGAAAAATAATCACTTAAAAAAAAAACTATTTAGTGCCAAGCTTCCTAAAACATCTTTAAAATGTCAAATATCCATGAATCATAGGGTATTATCCATTTTATTTGAAAACCATGGAACTCTACTACTAGAACTTCATTCTAGGTTGTTTAAAACAAAGTACAATGCAAAACTGTCTTCTTTCATAAGAACCATTTTCTAGATGGGCATAGATTCTTTGAGGGAATTCTTATCATGCAGATATTTTACTTCAAAATCTAAACTTGTACCACTTTACTGGAATGAAATATTAACGCTATTAATTTAAACATCATAACATTTTTTAAAAATAAGGTGTTAAAATAATATTTATTCATCAATCCTATACCACTACAATATTTTAGATCAGTGATTTAATATCTGAAAAATTTATCACATACTATGCATACCACTGATCAGCAGAGGCTGAAATTTTACTGTAACTTCAGTCCAAAGATACAGGTTTTAATTTGAGTTCTCCATAATTCACAGAAATATTTAAGGGTAAATATAAGTCTTAATTAAAATCCCTATTCTCCCAGCATGTGCTAAACCCACCCTGCTCCACATGCAGACCCTTGGCCCCAAACAATCCCGAGAGGATGTTGGCTCAGAGCAGCAAGGAGCTGACAGATGGGGCATTCGGTAAAGGAGTGGTGCTGGGTTTTTTCATTTTTGTTAGAGACGAAAGCTGTGGGAAAAACATTCTCCACTTAATCTATTTTATTTTCAGCAAGGTTTTACCTGTAAATATTAATTTATACACCAGCAAAACTCACTAGATGCCTGGGCTACATGAATATAAATGAAATAAAGCTATCCAAACTAAAAAATGAAATTTCCTGTATCTTCCTTTCTCAGGCAGAGGAAAAATATCCAAGGATTTAAAATTCTATCCAGTGGTTTCAAAGGCAACAAAAGATCTCACATTGAGCTCTCATTTAAATAGGTGGGGTTAACCAGGGTAGAAATTACAAGTTAAAGTGCTGCAGCATAAAGAAGAAAAATAATCATTTATGCCATTTTCAATACAGAATTTATTTCCAAATCAAAACCCTTTACACTTGGAATATTGTCAAATCTCAAATTTTTACCTTGCTGAGATCTACGACCACCTTTTGAAACTGAGACAGTGTAGGTATGATTACTCCCTGTATACTCAAGGGTTAGGAAAATGGAAAAGAACCGTGAGCCCCTCAAGAATGGTGGCTTTTCTTATTGGAATGAAGTAAATAAAATAAATTCATTGACAATGCAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG048715]] | + | [[Category:Intergenic]][[Category:NONHSAG048715]][[Category:Transcripts]] |
Latest revision as of 06:45, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123132 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1926 nt |
Genomic location |
chr7+:126855181..126869975 |
Exon number |
3 |
Exons |
126855181..126855307,126859521..126859756,126868427..126869975 |
Genome context |
|
Sequence |
000001 AGCTGTGGGA ACATTCCTAC AAAGCTGATT CTCTTCCGAT TCTGCTGGAA TCCTGAGTCT CTCTCAAACT GGAATTATCT 000080
000081 TAACAATTCT TTTGCTTGAG GTTTCCTGGA CGGCATATGT GGATAATGGT CTCACTCTGT CATCCAGGCT GGAGTACAGT 000160 000161 GGCATGATCC TAGCTCACTG TAGATTCGAA ATCCTGTTCC AGTGGTCCTC CCACCTCAAC CTCCTGATCA ACTGAACTAC 000240 000241 AGGAATGCAC CACCAAACCC AGCTAATTAT TTTTTTGTAG AGGTGGGGGT CTCACAATGC TGCCCAGACT GTTCTCAAAC 000320 000321 TCCTGGCCTC AAGTGATGTT CCTGCCCAGG CCTAAAATTT TAAGGAGCAG GTGATGTTTA GCCTGGAGAA CTGAAGGCTC 000400 000401 AGGAAGAACG GGGTCTTCAA ACACCTGAAG GACTGTCTCA TGAAAAAGAG ATGCACAAGA CAGGAGAATT GAGCAGAGAG 000480 000481 ATGTTTAACT CAAATCGAAG AACAAAGACA GCATTGAATC ACCACCTATC AAGGGTCTTA CTTGAATAGA CTTTGGTTTG 000560 000561 GATGAGAGGC TATAGAAGAA AACCTCAAAA GTCTCTTCCA ATTCTAAGGT TTCATGATTC CAGGCATTTG GAGAATTAGG 000640 000641 AAAAATAATC ACTTAAAAAA AAAACTATTT AGTGCCAAGC TTCCTAAAAC ATCTTTAAAA TGTCAAATAT CCATGAATCA 000720 000721 TAGGGTATTA TCCATTTTAT TTGAAAACCA TGGAACTCTA CTACTAGAAC TTCATTCTAG GTTGTTTAAA ACAAAGTACA 000800 000801 ATGCAAAACT GTCTTCTTTC ATAAGAACCA TTTTCTAGAT GGGCATAGAT TCTTTGAGGG AATTCTTATC ATGCAGATAT 000880 000881 TTTACTTCAA AATCTAAACT TGTACCACTT TACTGGAATG AAATATTAAC GCTATTAATT TAAACATCAT AACATTTTTT 000960 000961 AAAAATAAGG TGTTAAAATA ATATTTATTC ATCAATCCTA TACCACTACA ATATTTTAGA TCAGTGATTT AATATCTGAA 001040 001041 AAATTTATCA CATACTATGC ATACCACTGA TCAGCAGAGG CTGAAATTTT ACTGTAACTT CAGTCCAAAG ATACAGGTTT 001120 001121 TAATTTGAGT TCTCCATAAT TCACAGAAAT ATTTAAGGGT AAATATAAGT CTTAATTAAA ATCCCTATTC TCCCAGCATG 001200 001201 TGCTAAACCC ACCCTGCTCC ACATGCAGAC CCTTGGCCCC AAACAATCCC GAGAGGATGT TGGCTCAGAG CAGCAAGGAG 001280 001281 CTGACAGATG GGGCATTCGG TAAAGGAGTG GTGCTGGGTT TTTTCATTTT TGTTAGAGAC GAAAGCTGTG GGAAAAACAT 001360 001361 TCTCCACTTA ATCTATTTTA TTTTCAGCAA GGTTTTACCT GTAAATATTA ATTTATACAC CAGCAAAACT CACTAGATGC 001440 001441 CTGGGCTACA TGAATATAAA TGAAATAAAG CTATCCAAAC TAAAAAATGA AATTTCCTGT ATCTTCCTTT CTCAGGCAGA 001520 001521 GGAAAAATAT CCAAGGATTT AAAATTCTAT CCAGTGGTTT CAAAGGCAAC AAAAGATCTC ACATTGAGCT CTCATTTAAA 001600 001601 TAGGTGGGGT TAACCAGGGT AGAAATTACA AGTTAAAGTG CTGCAGCATA AAGAAGAAAA ATAATCATTT ATGCCATTTT 001680 001681 CAATACAGAA TTTATTTCCA AATCAAAACC CTTTACACTT GGAATATTGT CAAATCTCAA ATTTTTACCT TGCTGAGATC 001760 001761 TACGACCACC TTTTGAAACT GAGACAGTGT AGGTATGATT ACTCCCTGTA TACTCAAGGG TTAGGAAAAT GGAAAAGAAC 001840 001841 CGTGAGCCCC TCAAGAATGG TGGCTTTTCT TATTGGAATG AAGTAAATAA AATAAATTCA TTGACAATGC AAAAAAAAAA 001920 001921 AAAAAA |
Predicted Small Protein
Name | NONHSAT123132_smProtein_1670:1885 |
Length | 72 |
Molecular weight | 8490.8364 |
Aromaticity | 0.154929577465 |
Instability index | 44.4635211268 |
Isoelectric point | 9.30059814453 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0283197636139 |
Amino acid sequence | MPFSIQNLFPNQNPLHLEYCQISNFYLAEIYDHLLKLRQCRYDYSLYTQGLGKWKRTVSP SRMVAFLIGMK |
Secondary structure | LLLEELLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLEEEELLLLEEEEEELH HHHHHHHLLLL |
PRMN | - |
PiMo | - |