Difference between revisions of "NONHSAT126553"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TGGAACCTTTTTGTAGGGAGAAGGGCAGGATGTTTTTAACTGAATGTGACCTCAGGGGAATACTAGAGGTAAGGAGAGAAAAATAATTGAGGTAACTGTGGGTGTTTTACATCTCGGAAACCATGGCTTTTAATAAGGCCACATGAAGAGAGAAGCTGGCATCATCCCACGCAAAAACCAGTGCCTGGCAGAGTTGTGGAAGAAAATAATAAAATTTCTGAATGGGGCAGCGTGGAGAAATCCTAAGAGAAATAGCATAAGAGCATTTTGGAACACATCCAGGAAAAGATAACTTTCGACACACCTGTAGACGTTCGCCAGGTAAAGGAGTGATGGAAACTCTCCAGTTCAGATCCAGTAGCTTTTAGGGAAGGAACTACAGTTGCTGACTTAAGTTGAAGAAGCATCTATTTAATGTCTGGTCAAATCCTACAAGAAACACAGAAATCTATGATTAAAAAGCTGAGCACTTTGATATACTGCAAAGGGTAGAGAAGGCAGGACGGTAGAAATTTTCTGCAAGAAAGAATGAATTTCAGGATTTATCACTAAATAAGACAAAGTCATTTATTTAGTCCCCCTGACACAGCAGGGCAAACTGAGTTGACATACAAGTTACCTGGAGAAAAAGAGAGCAATTCCAGGACTTCCTCTTCAGCCTAAAAGAAGGTACCAGATCTGTGCACTGGGGCGATGTGGAAGAGACCTGCTTATTGCCCCTGATGTAAGCTCCAGTAAGAAAAGACGTCAAGTACAAGTACTAGGAAATCACTTTATACATCTGTTTATAGGTTTATGGATGCAGAGGCTGAAGATAAAACGCTGCGTACTCGCTCTAAAGGAACCGAGGTGCCAATGGATTCACTAATCCAGGAGCTCAGATTGCCCCTGTGAGAATAGAGAGAAGTAGACTCCTAGACTCACAAAGTGCTCAAGTGTTGCCTATGATTGCTCC</dnaseq>| | sequence = <dnaseq>TGGAACCTTTTTGTAGGGAGAAGGGCAGGATGTTTTTAACTGAATGTGACCTCAGGGGAATACTAGAGGTAAGGAGAGAAAAATAATTGAGGTAACTGTGGGTGTTTTACATCTCGGAAACCATGGCTTTTAATAAGGCCACATGAAGAGAGAAGCTGGCATCATCCCACGCAAAAACCAGTGCCTGGCAGAGTTGTGGAAGAAAATAATAAAATTTCTGAATGGGGCAGCGTGGAGAAATCCTAAGAGAAATAGCATAAGAGCATTTTGGAACACATCCAGGAAAAGATAACTTTCGACACACCTGTAGACGTTCGCCAGGTAAAGGAGTGATGGAAACTCTCCAGTTCAGATCCAGTAGCTTTTAGGGAAGGAACTACAGTTGCTGACTTAAGTTGAAGAAGCATCTATTTAATGTCTGGTCAAATCCTACAAGAAACACAGAAATCTATGATTAAAAAGCTGAGCACTTTGATATACTGCAAAGGGTAGAGAAGGCAGGACGGTAGAAATTTTCTGCAAGAAAGAATGAATTTCAGGATTTATCACTAAATAAGACAAAGTCATTTATTTAGTCCCCCTGACACAGCAGGGCAAACTGAGTTGACATACAAGTTACCTGGAGAAAAAGAGAGCAATTCCAGGACTTCCTCTTCAGCCTAAAAGAAGGTACCAGATCTGTGCACTGGGGCGATGTGGAAGAGACCTGCTTATTGCCCCTGATGTAAGCTCCAGTAAGAAAAGACGTCAAGTACAAGTACTAGGAAATCACTTTATACATCTGTTTATAGGTTTATGGATGCAGAGGCTGAAGATAAAACGCTGCGTACTCGCTCTAAAGGAACCGAGGTGCCAATGGATTCACTAATCCAGGAGCTCAGATTGCCCCTGTGAGAATAGAGAGAAGTAGACTCCTAGACTCACAAAGTGCTCAAGTGTTGCCTATGATTGCTCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG050215]][[Category:Transcripts]] |
Latest revision as of 06:58, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT126553 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
955 nt |
| Genomic location |
chr8-:53092854..53322309 |
| Exon number |
10 |
| Exons |
53092854..53092872,53113882..53113936,53124639..53124669,53126763..53126817,53130302..53130461,53133301..53133408,53134200..53134353,53142592..53142637,53321888..53322012,53322108..53322309 |
| Genome context |
|
| Sequence |
000001 TGGAACCTTT TTGTAGGGAG AAGGGCAGGA TGTTTTTAAC TGAATGTGAC CTCAGGGGAA TACTAGAGGT AAGGAGAGAA 000080
000081 AAATAATTGA GGTAACTGTG GGTGTTTTAC ATCTCGGAAA CCATGGCTTT TAATAAGGCC ACATGAAGAG AGAAGCTGGC 000160 000161 ATCATCCCAC GCAAAAACCA GTGCCTGGCA GAGTTGTGGA AGAAAATAAT AAAATTTCTG AATGGGGCAG CGTGGAGAAA 000240 000241 TCCTAAGAGA AATAGCATAA GAGCATTTTG GAACACATCC AGGAAAAGAT AACTTTCGAC ACACCTGTAG ACGTTCGCCA 000320 000321 GGTAAAGGAG TGATGGAAAC TCTCCAGTTC AGATCCAGTA GCTTTTAGGG AAGGAACTAC AGTTGCTGAC TTAAGTTGAA 000400 000401 GAAGCATCTA TTTAATGTCT GGTCAAATCC TACAAGAAAC ACAGAAATCT ATGATTAAAA AGCTGAGCAC TTTGATATAC 000480 000481 TGCAAAGGGT AGAGAAGGCA GGACGGTAGA AATTTTCTGC AAGAAAGAAT GAATTTCAGG ATTTATCACT AAATAAGACA 000560 000561 AAGTCATTTA TTTAGTCCCC CTGACACAGC AGGGCAAACT GAGTTGACAT ACAAGTTACC TGGAGAAAAA GAGAGCAATT 000640 000641 CCAGGACTTC CTCTTCAGCC TAAAAGAAGG TACCAGATCT GTGCACTGGG GCGATGTGGA AGAGACCTGC TTATTGCCCC 000720 000721 TGATGTAAGC TCCAGTAAGA AAAGACGTCA AGTACAAGTA CTAGGAAATC ACTTTATACA TCTGTTTATA GGTTTATGGA 000800 000801 TGCAGAGGCT GAAGATAAAA CGCTGCGTAC TCGCTCTAAA GGAACCGAGG TGCCAATGGA TTCACTAATC CAGGAGCTCA 000880 000881 GATTGCCCCT GTGAGAATAG AGAGAAGTAG ACTCCTAGAC TCACAAAGTG CTCAAGTGTT GCCTATGATT GCTCC |
Predicted Small Protein
| Name | NONHSAT126553_smProtein_29:85 |
| Length | 19 |
| Molecular weight | 2208.6034 |
| Aromaticity | 0.0555555555556 |
| Instability index | 99.0444444444 |
| Isoelectric point | 6.01190185547 |
| Runs | 4 |
| Runs residual | 0.0438596491228 |
| Runs probability | 0.0451775304718 |
| Amino acid sequence | MFLTECDLRGILEVRREK |
| Secondary structure | LLLLLLLLHHHHHEEELL |
| PRMN | - |
| PiMo | - |
